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ONTOLOGY REPORT - ANNOTATIONS


Term:trans-synaptic signaling, modulating synaptic transmission
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Accession:GO:0099550 term browser browse the term
Definition:Cell-cell signaling between presynapse and postsynapse, across the synaptic cleft, that modulates the synaptic transmission properties of the synapse.
Comment:Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua.


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trans-synaptic signaling, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cspg5 chondroitin sulfate proteoglycan 5 involved_in ISO (MGI:3583729|PMID:15848802) SynGO PMID:15848802 MGI:3583729 NCBI chrNW_004955420:24,735,155...24,746,580
Ensembl chrNW_004955420:24,734,561...24,747,414
JBrowse link
retrograde trans-synaptic signaling by neuropeptide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain derived neurotrophic factor involved_in ISO (MGI:4457852|PMID:19448629) SynGO PMID:19448629 MGI:4457852 NCBI chrNW_004955476:6,773,244...6,822,201
Ensembl chrNW_004955476:6,772,088...6,822,588
JBrowse link
retrograde trans-synaptic signaling by nitric oxide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gucy1a1 guanylate cyclase 1 soluble subunit alpha 1 involved_in ISO (MGI:6092877|PMID:28782641) SynGO PMID:28782641 MGI:6092877 NCBI chrNW_004955471:11,367,318...11,422,199
Ensembl chrNW_004955471:11,367,282...11,424,273
JBrowse link
trans-synaptic signaling by BDNF, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ntrk2 neurotrophic receptor tyrosine kinase 2 involved_in ISO (MGI:5661287|PMID:24991961) SynGO PMID:24991961 MGI:5661287 NCBI chrNW_004955432:2,284,283...2,629,631
Ensembl chrNW_004955432:2,288,898...2,630,878
JBrowse link
G Plat plasminogen activator, tissue type involved_in ISO (MGI:3615067|PMID:15486301) SynGO PMID:15486301 MGI:3615067 NCBI chrNW_004955536:730,962...754,333
Ensembl chrNW_004955536:730,981...756,394
JBrowse link
G Plg plasminogen involved_in ISO (MGI:3615067|PMID:15486301) SynGO PMID:15486301 MGI:3615067 NCBI chrNW_004955439:20,317,814...20,366,724
Ensembl chrNW_004955439:20,317,552...20,366,475
JBrowse link
G Syt4 synaptotagmin 4 involved_in ISO (MGI:4457852|PMID:19448629) SynGO PMID:19448629 MGI:4457852 NCBI chrNW_004955402:29,195,124...29,204,816
Ensembl chrNW_004955402:29,193,455...29,204,975
JBrowse link
trans-synaptic signaling by endocannabinoid, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnr1 cannabinoid receptor 1 involved_in ISO (MGI:5819353|PMID:16540577) SynGO PMID:16540577 MGI:5819353 NCBI chrNW_004955411:15,052,151...15,077,320
Ensembl chrNW_004955411:15,052,163...15,077,320
JBrowse link
G F2r coagulation factor II thrombin receptor involved_in ISO (MGI:5816443|PMID:21414931) ParkinsonsUK-UCL PMID:21414931 MGI:5816443 NCBI chrNW_004955425:24,144,905...24,164,498 JBrowse link
G Grm5 glutamate metabotropic receptor 5 involved_in ISO PMID:21993209 SynGO PMID:21993209 RGD:12050103 NCBI chrNW_004955414:4,424,245...4,919,399 JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 involved_in ISO (MGI:5789683|PMID:27296803) SynGO PMID:27296803 MGI:5789683 NCBI chrNW_004955414:14,365,325...14,447,470
Ensembl chrNW_004955414:14,365,157...14,450,611
JBrowse link
trans-synaptic signaling by neuropeptide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ntrk2 neurotrophic receptor tyrosine kinase 2 involved_in ISO (MGI:5661287|PMID:24991961) SynGO PMID:24991961 MGI:5661287 NCBI chrNW_004955432:2,284,283...2,629,631
Ensembl chrNW_004955432:2,288,898...2,630,878
JBrowse link
trans-synaptic signaling by nitric oxide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gucy1b1 guanylate cyclase 1 soluble subunit beta 1 involved_in ISO (MGI:5609454|PMID:25413364) SynGO PMID:25413364 MGI:5609454 NCBI chrNW_004955471:11,303,478...11,349,512
Ensembl chrNW_004955471:11,303,242...11,351,190
JBrowse link
trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Efnb3 ephrin B3 involved_in ISO (MGI:3620453|PMID:16571754) SynGO PMID:16571754 MGI:3620453 NCBI chrNW_004955467:9,217,796...9,225,223
Ensembl chrNW_004955467:9,217,796...9,224,940
JBrowse link
G Ephb2 EPH receptor B2 involved_in ISO (MGI:5819355|PMID:12052960) SynGO PMID:12052960 MGI:5819355 NCBI chrNW_004955452:2,844,713...2,986,790
Ensembl chrNW_004955452:2,844,713...2,980,445
JBrowse link
G Nptn neuroplastin involved_in ISO PMID:10759566 SynGO PMID:10759566 RGD:8553916 NCBI chrNW_004955450:3,938,403...4,002,694
Ensembl chrNW_004955450:3,938,403...4,004,059
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11978
    signaling 4267
      cell-cell signaling 1358
        synaptic signaling 662
          trans-synaptic signaling 642
            trans-synaptic signaling, modulating synaptic transmission 15
              trans-synaptic signaling by BDNF, modulating synaptic transmission + 4
              trans-synaptic signaling by lipid, modulating synaptic transmission + 4
              trans-synaptic signaling by neuropeptide, modulating synaptic transmission + 2
              trans-synaptic signaling by soluble gas, modulating synaptic transmission + 2
              trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission 3
Path 2
Term Annotations click to browse term
  biological_process 11978
    cellular process 11211
      cell communication 4334
        cell-cell signaling 1358
          synaptic signaling 662
            trans-synaptic signaling 642
              anterograde trans-synaptic signaling 635
                chemical synaptic transmission 635
                  trans-synaptic signaling, modulating synaptic transmission 15
                    trans-synaptic signaling by BDNF, modulating synaptic transmission + 4
                    trans-synaptic signaling by lipid, modulating synaptic transmission + 4
                    trans-synaptic signaling by neuropeptide, modulating synaptic transmission + 2
                    trans-synaptic signaling by soluble gas, modulating synaptic transmission + 2
                    trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission 3
paths to the root