Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:trans-synaptic signaling, modulating synaptic transmission
go back to main search page
Accession:GO:0099550 term browser browse the term
Definition:Cell-cell signaling between presynapse and postsynapse, across the synaptic cleft, that modulates the synaptic transmission properties of the synapse.
Comment:Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua.


show annotations for term's descendants           Sort by:
trans-synaptic signaling, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbln1 cerebellin 1 precursor involved_in ISO (PMID:36205393) RGD PMID:36205393 NCBI chr19:19,608,763...19,612,572
Ensembl chr19:19,608,716...19,612,572 		JBrowse link
G Cbln2 cerebellin 2 precursor involved_in ISO (PMID:29784783), (PMID:36205393) RGD PMID:29784783 PMID:36205393 NCBI chr18:79,940,412...79,948,766
Ensembl chr18:79,942,590...79,947,855 		JBrowse link
G Cbln4 cerebellin 4 precursor involved_in ISO (PMID:35544694) RGD PMID:35544694 NCBI chr 3:160,799,587...160,807,143
Ensembl chr 3:160,799,587...160,807,143 		JBrowse link
G Igsf21 immunoglobin superfamily, member 21 involved_in ISO
IEA		 (PMID:28864826)
GO_REF:0000107		 RGD
Ensembl		 PMID:28864826 GO_REF:0000107 NCBI chr 5:152,287,834...152,512,174
Ensembl chr 5:152,287,835...152,512,174 		JBrowse link
G Neo1 neogenin 1 involved_in ISO
IEA		 (PMID:35544694)
GO_REF:0000107		 RGD
Ensembl		 PMID:35544694 GO_REF:0000107 NCBI chr 8:59,273,860...59,426,486
Ensembl chr 8:59,275,569...59,430,348 		JBrowse link
G Nrxn1 neurexin 1 involved_in ISO
IEA		 (PMID:36205393)
GO_REF:0000107		 RGD
Ensembl		 PMID:36205393 GO_REF:0000107 NCBI chr 6:3,177,788...4,323,848
Ensembl chr 6:3,177,897...4,322,710 		JBrowse link
G Nrxn3 neurexin 3 involved_in ISO
IEA		 (PMID:36205393)
GO_REF:0000107		 RGD
Ensembl		 PMID:36205393 GO_REF:0000107 NCBI chr 6:107,641,760...109,272,849
Ensembl chr 6:107,641,780...109,272,044 		JBrowse link
regulation of trans-synaptic signaling by BDNF, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slitrk5 SLIT and NTRK-like family, member 5 involved_in ISO (PMID:26004511) RGD PMID:26004511 NCBI chr15:88,848,123...88,858,809
Ensembl chr15:88,847,535...88,856,836 		JBrowse link
G Syt4 synaptotagmin 4 involved_in ISO (PMID:19448629) RGD PMID:19448629 NCBI chr18:23,036,973...23,046,380
Ensembl chr18:23,038,378...23,046,332 		JBrowse link
regulation of trans-synaptic signaling by endocannabinoid, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnrip1 cannabinoid receptor interacting protein 1 involved_in ISO (PMID:25772509) RGD PMID:25772509 NCBI chr14:91,462,877...91,492,739
Ensembl chr14:91,462,647...91,492,735 		JBrowse link
G Faah fatty acid amide hydrolase involved_in ISO (PMID:30532004) RGD PMID:30532004 NCBI chr 5:129,479,774...129,499,018
Ensembl chr 5:129,479,824...129,498,677 		JBrowse link
G Nrxn1 neurexin 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:26213384)		 Ensembl
RGD		 PMID:26213384 GO_REF:0000107 NCBI chr 6:3,177,788...4,323,848
Ensembl chr 6:3,177,897...4,322,710 		JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 involved_in ISO (PMID:27296803) RGD PMID:27296803 NCBI chr 1:152,111,172...152,226,390
Ensembl chr 1:152,111,188...152,226,383 		JBrowse link
retrograde trans-synaptic signaling by neuropeptide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain-derived neurotrophic factor involved_in ISO (MGI:4457852|PMID:19448629) RGD PMID:19448629 MGI:4457852 NCBI chr 3:96,165,042...96,215,621
Ensembl chr 3:96,165,042...96,215,615 		JBrowse link
retrograde trans-synaptic signaling by nitric oxide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gucy1a1 guanylate cyclase 1 soluble subunit alpha 1 involved_in ISO (PMID:28782641) RGD PMID:28782641 NCBI chr 2:167,418,615...167,482,293
Ensembl chr 2:167,418,640...167,481,671 		JBrowse link
trans-synaptic signaling by BDNF, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain-derived neurotrophic factor involved_in ISO (PMID:19448629) RGD PMID:19448629 NCBI chr 3:96,165,042...96,215,621
Ensembl chr 3:96,165,042...96,215,615 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:24991961)		 Ensembl
RGD		 PMID:24991961 GO_REF:0000107 NCBI chr17:5,558,992...5,870,299
Ensembl chr17:5,559,043...5,869,136 		JBrowse link
G Plat plasminogen activator, tissue type involved_in IEA
ISO		 GO_REF:0000107
(PMID:15486301)		 Ensembl
RGD		 PMID:15486301 GO_REF:0000107 NCBI chr16:69,240,582...69,265,177
Ensembl chr16:69,240,585...69,268,223 		JBrowse link
G Plg plasminogen involved_in IEA
ISO		 GO_REF:0000107
(PMID:15486301)		 Ensembl
RGD		 PMID:15486301 GO_REF:0000107 NCBI chr 1:48,325,186...48,367,643
Ensembl chr 1:48,325,185...48,367,786 		JBrowse link
trans-synaptic signaling by endocannabinoid, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnr1 cannabinoid receptor 1 involved_in ISO (MGI:5819353|PMID:16540577) RGD PMID:16540577 MGI:5819353 NCBI chr 5:48,408,543...48,436,099
Ensembl chr 5:48,408,574...48,435,099 		JBrowse link
G Cnr2 cannabinoid receptor 2 involved_in ISO (PMID:27133464) RGD PMID:27133464 NCBI chr 5:148,125,222...148,151,548
Ensembl chr 5:148,125,604...148,151,548 		JBrowse link
G F2r coagulation factor II (thrombin) receptor involved_in IEA
ISO		 GO_REF:0000107
(MGI:5816443|PMID:21414931)		 Ensembl
RGD		 PMID:21414931 GO_REF:0000107 MGI:5816443 NCBI chr 2:26,869,343...26,885,856
Ensembl chr 2:26,868,404...26,885,870 		JBrowse link
G Grm5 glutamate metabotropic receptor 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:141,310,069...141,884,980
Ensembl chr 1:141,312,368...141,882,274 		JBrowse link
trans-synaptic signaling by neuropeptide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ntrk2 neurotrophic receptor tyrosine kinase 2 involved_in ISO
IBA		 (MGI:5661287|PMID:24991961)
GO_REF:0000033		 RGD
GO_Central		 PMID:24991961 GO_REF:0000033 MGI:5661287 NCBI chr17:5,558,992...5,870,299
Ensembl chr17:5,559,043...5,869,136 		JBrowse link
trans-synaptic signaling by nitric oxide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gucy1b1 guanylate cyclase 1 soluble subunit beta 1 involved_in ISO (MGI:5609454|PMID:25413364) RGD PMID:25413364 MGI:5609454 NCBI chr 2:167,348,824...167,398,983
Ensembl chr 2:167,348,825...167,398,916 		JBrowse link
trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Efnb3 ephrin B3 involved_in ISO (PMID:16571754) RGD PMID:16571754 NCBI chr10:54,274,506...54,281,951
Ensembl chr10:54,274,506...54,280,471 		JBrowse link
G Ephb2 Eph receptor B2 involved_in ISO (MGI:5819355|PMID:12052960) RGD PMID:12052960 MGI:5819355 NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:148,897,246...149,077,059 		JBrowse link
G Nptn neuroplastin involved_in IDA
EXP		 PMID:10759566 SynGO PMID:10759566 PMID:10759566 RGD:8553916, RGD:8553916 NCBI chr 8:58,996,873...59,063,402
Ensembl chr 8:58,996,887...59,063,401 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20115
    regulation of biological process 13128
      regulation of signaling 3788
        regulation of trans-synaptic signaling 740
          modulation of chemical synaptic transmission 739
            trans-synaptic signaling, modulating synaptic transmission 25
              trans-synaptic signaling by BDNF, modulating synaptic transmission + 6
              trans-synaptic signaling by lipid, modulating synaptic transmission + 8
              trans-synaptic signaling by neuropeptide, modulating synaptic transmission + 2
              trans-synaptic signaling by soluble gas, modulating synaptic transmission + 2
              trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission 3
Path 2
Term Annotations click to browse term
  biological_process 20115
    biological regulation 13554
      regulation of biological process 13128
        signaling 7641
          cell-cell signaling 1463
            synaptic signaling 990
              trans-synaptic signaling 954
                anterograde trans-synaptic signaling 946
                  chemical synaptic transmission 946
                    modulation of chemical synaptic transmission 739
                      trans-synaptic signaling, modulating synaptic transmission 25
                        trans-synaptic signaling by BDNF, modulating synaptic transmission + 6
                        trans-synaptic signaling by lipid, modulating synaptic transmission + 8
                        trans-synaptic signaling by neuropeptide, modulating synaptic transmission + 2
                        trans-synaptic signaling by soluble gas, modulating synaptic transmission + 2
                        trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission 3
paths to the root