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ONTOLOGY REPORT - ANNOTATIONS

Term:trans-synaptic signaling, modulating synaptic transmission
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Accession:GO:0099550 term browser browse the term
Definition:Cell-cell signaling between presynapse and postsynapse, across the synaptic cleft, that modulates the synaptic transmission properties of the synapse.
Comment:Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua.


show annotations for term's descendants           Sort by:
trans-synaptic signaling, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbln1 cerebellin 1 precursor involved_in ISO (PMID:36205393) RGD PMID:36205393 NCBI chr19:19,608,763...19,612,572
Ensembl chr19:19,608,716...19,612,572 		JBrowse link
G Cbln2 cerebellin 2 precursor involved_in ISO (PMID:29784783), (PMID:36205393) RGD PMID:29784783 PMID:36205393 NCBI chr18:79,940,412...79,948,766
Ensembl chr18:79,942,590...79,947,855 		JBrowse link
G Cbln4 cerebellin 4 precursor involved_in ISO (PMID:35544694) RGD PMID:35544694 NCBI chr 3:160,799,587...160,807,143
Ensembl chr 3:160,799,587...160,807,143 		JBrowse link
G Igsf21 immunoglobin superfamily, member 21 involved_in ISO (PMID:28864826) RGD PMID:28864826 NCBI chr 5:152,287,834...152,512,174
Ensembl chr 5:152,287,835...152,512,174 		JBrowse link
G Neo1 neogenin 1 involved_in ISO (PMID:35544694) RGD PMID:35544694 NCBI chr 8:59,273,860...59,426,486
Ensembl chr 8:59,275,569...59,430,348 		JBrowse link
G Nrxn1 neurexin 1 involved_in ISO (PMID:36205393) RGD PMID:36205393 NCBI chr 6:3,177,788...4,323,848
Ensembl chr 6:3,177,897...4,322,710 		JBrowse link
G Nrxn3 neurexin 3 involved_in ISO (PMID:36205393) RGD PMID:36205393 NCBI chr 6:107,641,760...109,272,849
Ensembl chr 6:107,641,780...109,272,044 		JBrowse link
regulation of trans-synaptic signaling by BDNF, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slitrk5 SLIT and NTRK-like family, member 5 involved_in ISO (PMID:26004511) RGD PMID:26004511 NCBI chr15:88,848,123...88,858,809
Ensembl chr15:88,847,535...88,856,836 		JBrowse link
G Syt4 synaptotagmin 4 involved_in ISO (PMID:19448629) RGD PMID:19448629 NCBI chr18:23,036,973...23,046,380
Ensembl chr18:23,038,378...23,046,332 		JBrowse link
regulation of trans-synaptic signaling by endocannabinoid, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnrip1 cannabinoid receptor interacting protein 1 involved_in ISO (PMID:25772509) RGD PMID:25772509 NCBI chr14:91,462,877...91,492,739
Ensembl chr14:91,462,647...91,492,735 		JBrowse link
G Faah fatty acid amide hydrolase involved_in ISO (PMID:30532004) RGD PMID:30532004 NCBI chr 5:129,479,774...129,499,018
Ensembl chr 5:129,479,824...129,498,677 		JBrowse link
G Nrxn1 neurexin 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:26213384)		 Ensembl
RGD		 PMID:26213384 GO_REF:0000107 NCBI chr 6:3,177,788...4,323,848
Ensembl chr 6:3,177,897...4,322,710 		JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 involved_in ISO (PMID:27296803) RGD PMID:27296803 NCBI chr 1:152,111,172...152,226,390
Ensembl chr 1:152,111,188...152,226,383 		JBrowse link
retrograde trans-synaptic signaling by neuropeptide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain-derived neurotrophic factor involved_in ISO (MGI:4457852|PMID:19448629) RGD PMID:19448629 MGI:4457852 NCBI chr 3:96,165,042...96,215,621
Ensembl chr 3:96,165,042...96,215,615 		JBrowse link
retrograde trans-synaptic signaling by nitric oxide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gucy1a1 guanylate cyclase 1 soluble subunit alpha 1 involved_in ISO (PMID:28782641) RGD PMID:28782641 NCBI chr 2:167,418,615...167,482,293
Ensembl chr 2:167,418,640...167,481,671 		JBrowse link
trans-synaptic signaling by BDNF, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain-derived neurotrophic factor involved_in ISO (PMID:19448629) RGD PMID:19448629 NCBI chr 3:96,165,042...96,215,621
Ensembl chr 3:96,165,042...96,215,615 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:24991961)		 Ensembl
RGD		 PMID:24991961 GO_REF:0000107 NCBI chr17:5,558,992...5,870,299
Ensembl chr17:5,559,043...5,869,136 		JBrowse link
G Plat plasminogen activator, tissue type involved_in IEA
ISO		 GO_REF:0000107
(PMID:15486301)		 Ensembl
RGD		 PMID:15486301 GO_REF:0000107 NCBI chr16:69,240,582...69,265,177
Ensembl chr16:69,240,585...69,268,223 		JBrowse link
G Plg plasminogen involved_in IEA
ISO		 GO_REF:0000107
(PMID:15486301)		 Ensembl
RGD		 PMID:15486301 GO_REF:0000107 NCBI chr 1:48,325,186...48,367,643
Ensembl chr 1:48,325,185...48,367,786 		JBrowse link
trans-synaptic signaling by endocannabinoid, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnr1 cannabinoid receptor 1 involved_in ISO (MGI:5819353|PMID:16540577) RGD PMID:16540577 MGI:5819353 NCBI chr 5:48,408,543...48,436,099
Ensembl chr 5:48,408,574...48,435,099 		JBrowse link
G Cnr2 cannabinoid receptor 2 involved_in ISO (PMID:27133464) RGD PMID:27133464 NCBI chr 5:148,125,222...148,151,548
Ensembl chr 5:148,125,604...148,151,548 		JBrowse link
G F2r coagulation factor II (thrombin) receptor involved_in IEA
ISO		 GO_REF:0000107
(MGI:5816443|PMID:21414931)		 Ensembl
RGD		 PMID:21414931 GO_REF:0000107 MGI:5816443 NCBI chr 2:26,869,343...26,885,856
Ensembl chr 2:26,868,404...26,885,870 		JBrowse link
G Grm5 glutamate metabotropic receptor 5 involved_in IMP
IBA
IEA		 PMID:21993209
GO_REF:0000033
GO_REF:0000118		 GO_Central
TreeGrafter		 PMID:21993209 GO_REF:0000033 GO_REF:0000118, RGD:12050103 NCBI chr 1:141,310,069...141,884,980
Ensembl chr 1:141,312,368...141,882,274 		JBrowse link
trans-synaptic signaling by neuropeptide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ntrk2 neurotrophic receptor tyrosine kinase 2 involved_in IEA
IBA
ISO		 GO_REF:0000107
GO_REF:0000033
(MGI:5661287|PMID:24991961)		 Ensembl
GO_Central
RGD		 PMID:24991961 GO_REF:0000033 GO_REF:0000107 MGI:5661287 NCBI chr17:5,558,992...5,870,299
Ensembl chr17:5,559,043...5,869,136 		JBrowse link
trans-synaptic signaling by nitric oxide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gucy1b1 guanylate cyclase 1 soluble subunit beta 1 involved_in ISO (MGI:5609454|PMID:25413364) RGD PMID:25413364 MGI:5609454 NCBI chr 2:167,348,824...167,398,983
Ensembl chr 2:167,348,825...167,398,916 		JBrowse link
trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Efnb3 ephrin B3 involved_in ISO (PMID:16571754) RGD PMID:16571754 NCBI chr10:54,274,506...54,281,951
Ensembl chr10:54,274,506...54,280,471 		JBrowse link
G Ephb2 Eph receptor B2 involved_in ISO (MGI:5819355|PMID:12052960) RGD PMID:12052960 MGI:5819355 NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:148,897,246...149,077,059 		JBrowse link
G Nptn neuroplastin involved_in IDA
EXP		 PMID:10759566 SynGO PMID:10759566 PMID:10759566 RGD:8553916, RGD:8553916 NCBI chr 8:58,996,873...59,063,402
Ensembl chr 8:58,996,887...59,063,401 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20413
    regulation of biological process 13322
      regulation of signaling 3796
        regulation of trans-synaptic signaling 740
          modulation of chemical synaptic transmission 739
            trans-synaptic signaling, modulating synaptic transmission 25
              trans-synaptic signaling by BDNF, modulating synaptic transmission + 6
              trans-synaptic signaling by lipid, modulating synaptic transmission + 8
              trans-synaptic signaling by neuropeptide, modulating synaptic transmission + 2
              trans-synaptic signaling by soluble gas, modulating synaptic transmission + 2
              trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission 3
Path 2
Term Annotations click to browse term
  biological_process 20413
    biological regulation 13755
      regulation of biological process 13322
        signaling 7775
          cell-cell signaling 1480
            synaptic signaling 1008
              trans-synaptic signaling 969
                anterograde trans-synaptic signaling 961
                  chemical synaptic transmission 961
                    modulation of chemical synaptic transmission 739
                      trans-synaptic signaling, modulating synaptic transmission 25
                        trans-synaptic signaling by BDNF, modulating synaptic transmission + 6
                        trans-synaptic signaling by lipid, modulating synaptic transmission + 8
                        trans-synaptic signaling by neuropeptide, modulating synaptic transmission + 2
                        trans-synaptic signaling by soluble gas, modulating synaptic transmission + 2
                        trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission 3
paths to the root