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ONTOLOGY REPORT - ANNOTATIONS


Term:trans-synaptic signaling, modulating synaptic transmission
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Accession:GO:0099550 term browser browse the term
Definition:Cell-cell signaling between presynapse and postsynapse, across the synaptic cleft, that modulates the synaptic transmission properties of the synapse.
Comment:Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua.


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trans-synaptic signaling, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cspg5 chondroitin sulfate proteoglycan 5 involved_in IEA
ISO
IBA
GO_REF:0000107
(MGI:3583729|PMID:15848802)
PMID:21873635
Ensembl
RGD
PMID:15848802 PMID:21873635 GO_REF:0000107 MGI:3583729, RGD:13792537 NCBI chr 8:110,220,653...110,234,750
Ensembl chr 8:110,220,653...110,234,758
JBrowse link
retrograde trans-synaptic signaling by neuropeptide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain-derived neurotrophic factor involved_in ISO (MGI:4457852|PMID:19448629) RGD PMID:19448629 MGI:4457852 NCBI chr 3:96,165,042...96,215,621
Ensembl chr 3:96,165,042...96,215,615
JBrowse link
retrograde trans-synaptic signaling by nitric oxide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gucy1a1 guanylate cyclase 1 soluble subunit alpha 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:6092877|PMID:28782641)
Ensembl
RGD
PMID:28782641 GO_REF:0000107 MGI:6092877 NCBI chr 2:167,418,615...167,482,293
Ensembl chr 2:167,418,640...167,481,671
JBrowse link
trans-synaptic signaling by BDNF, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ntrk2 neurotrophic receptor tyrosine kinase 2 involved_in IEA
ISO
GO_REF:0000107
(MGI:5661287|PMID:24991961)
Ensembl
RGD
PMID:24991961 GO_REF:0000107 MGI:5661287 NCBI chr17:5,558,992...5,870,299
Ensembl chr17:5,559,043...5,869,136
JBrowse link
G Plat plasminogen activator, tissue type involved_in ISO (MGI:3615067|PMID:15486301) RGD PMID:15486301 MGI:3615067 NCBI chr16:69,240,582...69,265,177
Ensembl chr16:69,240,585...69,268,223
JBrowse link
G Plg plasminogen involved_in ISO (MGI:3615067|PMID:15486301) RGD PMID:15486301 MGI:3615067 NCBI chr 1:48,325,186...48,367,643
Ensembl chr 1:48,325,185...48,367,786
JBrowse link
G Syt4 synaptotagmin 4 involved_in ISO (MGI:4457852|PMID:19448629) RGD PMID:19448629 MGI:4457852 NCBI chr18:23,036,973...23,046,380
Ensembl chr18:23,038,378...23,046,332
JBrowse link
trans-synaptic signaling by endocannabinoid, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnr1 cannabinoid receptor 1 involved_in ISO (MGI:5819353|PMID:16540577) RGD PMID:16540577 MGI:5819353 NCBI chr 5:48,408,543...48,436,099
Ensembl chr 5:48,408,574...48,435,099
JBrowse link
G F2r coagulation factor II (thrombin) receptor involved_in IEA
ISO
GO_REF:0000107
(MGI:5816443|PMID:21414931)
Ensembl
RGD
PMID:21414931 GO_REF:0000107 MGI:5816443 NCBI chr 2:26,869,343...26,885,856
Ensembl chr 2:26,868,404...26,885,870
JBrowse link
G Grm5 glutamate metabotropic receptor 5 involved_in IBA
IMP
PMID:21873635
PMID:21993209
GO_Central
SynGO
PMID:21873635 PMID:21993209 RGD:13792537, RGD:12050103 NCBI chr 1:141,310,069...141,884,980
Ensembl chr 1:141,312,368...141,882,274
JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 involved_in ISO (MGI:5789683|PMID:27296803) RGD PMID:27296803 MGI:5789683 NCBI chr 1:152,111,172...152,226,390
Ensembl chr 1:152,111,188...152,226,383
JBrowse link
trans-synaptic signaling by neuropeptide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ntrk2 neurotrophic receptor tyrosine kinase 2 involved_in IBA
ISO
IEA
PMID:21873635
(MGI:5661287|PMID:24991961)
GO_REF:0000107
RGD
Ensembl
PMID:24991961 PMID:21873635 GO_REF:0000107 MGI:5661287, RGD:13792537 NCBI chr17:5,558,992...5,870,299
Ensembl chr17:5,559,043...5,869,136
JBrowse link
trans-synaptic signaling by nitric oxide, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gucy1b1 guanylate cyclase 1 soluble subunit beta 1 involved_in IBA
ISO
PMID:21873635
(MGI:5609454|PMID:25413364)
RGD PMID:25413364 PMID:21873635 MGI:5609454, RGD:13792537 NCBI chr 2:167,348,824...167,398,983
Ensembl chr 2:167,348,825...167,398,916
JBrowse link
trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Efnb3 ephrin B3 involved_in ISO (MGI:3620453|PMID:16571754) RGD PMID:16571754 MGI:3620453 NCBI chr10:54,274,506...54,281,951
Ensembl chr10:54,274,506...54,280,471
JBrowse link
G Ephb2 Eph receptor B2 involved_in ISO (MGI:5819355|PMID:12052960) RGD PMID:12052960 MGI:5819355 NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:148,897,246...149,077,059
JBrowse link
G Nptn neuroplastin involved_in IDA PMID:10759566 SynGO PMID:10759566 RGD:8553916 NCBI chr 8:58,996,876...59,063,402
Ensembl chr 8:58,996,887...59,063,401
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19492
    signaling 7460
      cell-cell signaling 1735
        synaptic signaling 919
          trans-synaptic signaling 892
            trans-synaptic signaling, modulating synaptic transmission 15
              trans-synaptic signaling by BDNF, modulating synaptic transmission + 4
              trans-synaptic signaling by lipid, modulating synaptic transmission + 4
              trans-synaptic signaling by neuropeptide, modulating synaptic transmission + 2
              trans-synaptic signaling by soluble gas, modulating synaptic transmission + 2
              trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission 3
Path 2
Term Annotations click to browse term
  biological_process 19492
    cellular process 18340
      cell communication 7543
        cell-cell signaling 1735
          synaptic signaling 919
            trans-synaptic signaling 892
              anterograde trans-synaptic signaling 883
                chemical synaptic transmission 883
                  trans-synaptic signaling, modulating synaptic transmission 15
                    trans-synaptic signaling by BDNF, modulating synaptic transmission + 4
                    trans-synaptic signaling by lipid, modulating synaptic transmission + 4
                    trans-synaptic signaling by neuropeptide, modulating synaptic transmission + 2
                    trans-synaptic signaling by soluble gas, modulating synaptic transmission + 2
                    trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission 3
paths to the root