ONTOLOGY REPORT - ANNOTATIONS |
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Term: | trans-synaptic signaling, modulating synaptic transmission |
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Accession: | GO:0099550
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browse the term
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Definition: | Cell-cell signaling between presynapse and postsynapse, across the synaptic cleft, that modulates the synaptic transmission properties of the synapse. |
Comment: | Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua. |
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G |
Cspg5 |
chondroitin sulfate proteoglycan 5 |
involved_in |
IEA ISO IBA |
GO_REF:0000107 (MGI:3583729|PMID:15848802) PMID:21873635 |
Ensembl RGD |
PMID:15848802 PMID:21873635 |
GO_REF:0000107 MGI:3583729, RGD:13792537 |
NCBI chr 8:110,220,653...110,234,750
Ensembl chr 8:110,220,653...110,234,758
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G |
Bdnf |
brain-derived neurotrophic factor |
involved_in |
ISO |
(MGI:4457852|PMID:19448629) |
RGD |
PMID:19448629 |
MGI:4457852 |
NCBI chr 3:96,165,042...96,215,621
Ensembl chr 3:96,165,042...96,215,615
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G |
Gucy1a1 |
guanylate cyclase 1 soluble subunit alpha 1 |
involved_in |
IEA ISO |
GO_REF:0000107 (MGI:6092877|PMID:28782641) |
Ensembl RGD |
PMID:28782641 |
GO_REF:0000107 MGI:6092877 |
NCBI chr 2:167,418,615...167,482,293
Ensembl chr 2:167,418,640...167,481,671
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G |
Ntrk2 |
neurotrophic receptor tyrosine kinase 2 |
involved_in |
IEA ISO |
GO_REF:0000107 (MGI:5661287|PMID:24991961) |
Ensembl RGD |
PMID:24991961 |
GO_REF:0000107 MGI:5661287 |
NCBI chr17:5,558,992...5,870,299
Ensembl chr17:5,559,043...5,869,136
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G |
Plat |
plasminogen activator, tissue type |
involved_in |
ISO |
(MGI:3615067|PMID:15486301) |
RGD |
PMID:15486301 |
MGI:3615067 |
NCBI chr16:69,240,582...69,265,177
Ensembl chr16:69,240,585...69,268,223
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G |
Plg |
plasminogen |
involved_in |
ISO |
(MGI:3615067|PMID:15486301) |
RGD |
PMID:15486301 |
MGI:3615067 |
NCBI chr 1:48,325,186...48,367,643
Ensembl chr 1:48,325,185...48,367,786
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G |
Syt4 |
synaptotagmin 4 |
involved_in |
ISO |
(MGI:4457852|PMID:19448629) |
RGD |
PMID:19448629 |
MGI:4457852 |
NCBI chr18:23,036,973...23,046,380
Ensembl chr18:23,038,378...23,046,332
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G |
Cnr1 |
cannabinoid receptor 1 |
involved_in |
ISO |
(MGI:5819353|PMID:16540577) |
RGD |
PMID:16540577 |
MGI:5819353 |
NCBI chr 5:48,408,543...48,436,099
Ensembl chr 5:48,408,574...48,435,099
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G |
F2r |
coagulation factor II (thrombin) receptor |
involved_in |
IEA ISO |
GO_REF:0000107 (MGI:5816443|PMID:21414931) |
Ensembl RGD |
PMID:21414931 |
GO_REF:0000107 MGI:5816443 |
NCBI chr 2:26,869,343...26,885,856
Ensembl chr 2:26,868,404...26,885,870
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G |
Grm5 |
glutamate metabotropic receptor 5 |
involved_in |
IBA IMP |
PMID:21873635 PMID:21993209 |
GO_Central SynGO |
PMID:21873635 PMID:21993209 |
RGD:13792537, RGD:12050103 |
NCBI chr 1:141,310,069...141,884,980
Ensembl chr 1:141,312,368...141,882,274
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Pak1 |
p21 (RAC1) activated kinase 1 |
involved_in |
ISO |
(MGI:5789683|PMID:27296803) |
RGD |
PMID:27296803 |
MGI:5789683 |
NCBI chr 1:152,111,172...152,226,390
Ensembl chr 1:152,111,188...152,226,383
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G |
Ntrk2 |
neurotrophic receptor tyrosine kinase 2 |
involved_in |
IBA ISO IEA |
PMID:21873635 (MGI:5661287|PMID:24991961) GO_REF:0000107 |
RGD Ensembl |
PMID:24991961 PMID:21873635 |
GO_REF:0000107 MGI:5661287, RGD:13792537 |
NCBI chr17:5,558,992...5,870,299
Ensembl chr17:5,559,043...5,869,136
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G |
Gucy1b1 |
guanylate cyclase 1 soluble subunit beta 1 |
involved_in |
ISO |
(MGI:5609454|PMID:25413364) |
RGD |
PMID:25413364 |
MGI:5609454 |
NCBI chr 2:167,348,824...167,398,983
Ensembl chr 2:167,348,825...167,398,916
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G |
Efnb3 |
ephrin B3 |
involved_in |
ISO |
(MGI:3620453|PMID:16571754) |
RGD |
PMID:16571754 |
MGI:3620453 |
NCBI chr10:54,274,506...54,281,951
Ensembl chr10:54,274,506...54,280,471
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Ephb2 |
Eph receptor B2 |
involved_in |
ISO |
(MGI:5819355|PMID:12052960) |
RGD |
PMID:12052960 |
MGI:5819355 |
NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:148,897,246...149,077,059
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G |
Nptn |
neuroplastin |
involved_in |
IDA |
PMID:10759566 |
SynGO |
PMID:10759566 |
RGD:8553916 |
NCBI chr 8:58,996,876...59,063,402
Ensembl chr 8:58,996,887...59,063,401
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Term paths to the root
Path 1 |
biological_process |
18737 |
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signaling |
7370 |
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cell-cell signaling |
1766 |
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synaptic signaling |
924 |
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trans-synaptic signaling |
897 |
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trans-synaptic signaling, modulating synaptic transmission |
15 |
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trans-synaptic signaling by BDNF, modulating synaptic transmission + |
4 |
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trans-synaptic signaling by lipid, modulating synaptic transmission + |
4 |
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trans-synaptic signaling by neuropeptide, modulating synaptic transmission + |
2 |
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trans-synaptic signaling by soluble gas, modulating synaptic transmission + |
2 |
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trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission |
3 |
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Path 2 |
biological_process |
18737 |
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cellular process |
17432 |
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cell communication |
7465 |
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cell-cell signaling |
1766 |
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synaptic signaling |
924 |
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trans-synaptic signaling |
897 |
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anterograde trans-synaptic signaling |
889 |
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chemical synaptic transmission |
889 |
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trans-synaptic signaling, modulating synaptic transmission |
15 |
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trans-synaptic signaling by BDNF, modulating synaptic transmission + |
4 |
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trans-synaptic signaling by lipid, modulating synaptic transmission + |
4 |
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trans-synaptic signaling by neuropeptide, modulating synaptic transmission + |
2 |
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trans-synaptic signaling by soluble gas, modulating synaptic transmission + |
2 |
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trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission |
3 |
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