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ONTOLOGY REPORT - ANNOTATIONS


Term:trans-synaptic signaling, modulating synaptic transmission
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Accession:GO:0099550 term browser browse the term
Definition:Cell-cell signaling between presynapse and postsynapse, across the synaptic cleft, that modulates the synaptic transmission properties of the synapse.
Comment:Note that this term was created for the SynGO project, and will be obsoleted when the SynGO annotations are made in Noctua.


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trans-synaptic signaling, modulating synaptic transmission term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cspg5 chondroitin sulfate proteoglycan 5 IBA
ISO
PMID:21873635
(MGI:MGI:3583729|PMID:15848802)
RGD PMID:15848802, PMID:21873635 MGI:MGI:3583729, RGD:13792537 NCBI chr 8:118,333,695...118,348,040
Ensembl chr 8:118,333,706...118,347,582
JBrowse link
retrograde trans-synaptic signaling by neuropeptide, modulating synaptic transmission term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain-derived neurotrophic factor ISO (MGI:MGI:4457852|PMID:19448629) RGD PMID:19448629 MGI:MGI:4457852 NCBI chr 3:100,768,637...100,819,216
Ensembl chr 3:100,768,637...100,819,210
JBrowse link
retrograde trans-synaptic signaling by nitric oxide, modulating synaptic transmission term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gucy1a1 guanylate cyclase 1 soluble subunit alpha 1 ISO (MGI:MGI:6092877|PMID:28782641) RGD PMID:28782641 MGI:MGI:6092877 NCBI chr 2:181,045,694...181,103,321
Ensembl chr 2:181,045,703...181,102,918
JBrowse link
trans-synaptic signaling by BDNF, modulating synaptic transmission term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ntrk2 neurotrophic receptor tyrosine kinase 2 ISO (MGI:MGI:5661287|PMID:24991961) RGD PMID:24991961 MGI:MGI:5661287 NCBI chr17:5,934,651...6,245,778
Ensembl chr17:5,933,729...6,244,676
JBrowse link
G Plat plasminogen activator, tissue type ISO (MGI:MGI:3615067|PMID:15486301) RGD PMID:15486301 MGI:MGI:3615067 NCBI chr16:74,098,263...74,122,897
Ensembl chr16:74,098,260...74,122,889
JBrowse link
G Plg plasminogen ISO (MGI:MGI:3615067|PMID:15486301) RGD PMID:15486301 MGI:MGI:3615067 NCBI chr 1:48,521,828...48,563,895
Ensembl chr 1:48,521,772...48,563,776
JBrowse link
G Syt4 synaptotagmin 4 ISO (MGI:MGI:4457852|PMID:19448629) RGD PMID:19448629 MGI:MGI:4457852 NCBI chr18:24,172,580...24,181,989
Ensembl chr18:24,172,587...24,182,012
JBrowse link
trans-synaptic signaling by endocannabinoid, modulating synaptic transmission term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnr1 cannabinoid receptor 1 ISO (MGI:MGI:5819353|PMID:16540577) RGD PMID:16540577 MGI:MGI:5819353 NCBI chr 5:49,307,584...49,333,064
Ensembl chr 5:49,311,030...49,333,056
JBrowse link
G F2r coagulation factor II (thrombin) receptor ISO
IEA
(MGI:MGI:5816443|PMID:21414931)
GO_REF:0000107
RGD
Ensembl
PMID:21414931 GO_REF:0000107, MGI:MGI:5816443 NCBI chr 2:26,118,760...26,135,340
Ensembl chr 2:26,118,760...26,135,340
JBrowse link
G Grm5 glutamate metabotropic receptor 5 IMP
IBA
PMID:21993209
PMID:21873635
SynGO
GO_Central
PMID:21993209, PMID:21873635 RGD:12050103, RGD:13792537 NCBI chr 1:151,207,846...151,785,038
Ensembl chr 1:151,439,409...151,783,392
JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 ISO (MGI:MGI:5789683|PMID:27296803) RGD PMID:27296803 MGI:MGI:5789683 NCBI chr 1:162,768,156...162,883,356
Ensembl chr 1:162,768,156...162,883,355
JBrowse link
trans-synaptic signaling by neuropeptide, modulating synaptic transmission term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ntrk2 neurotrophic receptor tyrosine kinase 2 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(MGI:MGI:5661287|PMID:24991961)
Ensembl
RGD
PMID:24991961, PMID:21873635 GO_REF:0000107, MGI:MGI:5661287, RGD:13792537 NCBI chr17:5,934,651...6,245,778
Ensembl chr17:5,933,729...6,244,676
JBrowse link
trans-synaptic signaling by nitric oxide, modulating synaptic transmission term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gucy1b1 guanylate cyclase 1 soluble subunit beta 1 ISO
IBA
(MGI:MGI:5609454|PMID:25413364)
PMID:21873635
RGD PMID:25413364, PMID:21873635 MGI:MGI:5609454, RGD:13792537 NCBI chr 2:180,976,939...181,026,001
Ensembl chr 2:180,976,939...181,026,024
JBrowse link
trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Efnb3 ephrin B3 ISO (MGI:MGI:3620453|PMID:16571754) RGD PMID:16571754 MGI:MGI:3620453 NCBI chr10:56,161,431...56,168,819
Ensembl chr10:56,161,432...56,167,426
JBrowse link
G Ephb2 Eph receptor B2 ISO (MGI:MGI:5819355|PMID:12052960) RGD PMID:12052960 MGI:MGI:5819355 NCBI chr 5:155,024,478...155,143,539
Ensembl chr 5:155,022,493...155,204,456
JBrowse link
G Nptn neuroplastin IDA PMID:10759566 SynGO PMID:10759566 RGD:8553916 NCBI chr 8:63,379,062...63,445,694
Ensembl chr 8:63,379,087...63,445,686
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20027
    signaling 7583
      regulation of signaling 3492
        regulation of trans-synaptic signaling 657
          modulation of chemical synaptic transmission 656
            trans-synaptic signaling, modulating synaptic transmission 15
              trans-synaptic signaling by BDNF, modulating synaptic transmission + 4
              trans-synaptic signaling by lipid, modulating synaptic transmission + 4
              trans-synaptic signaling by neuropeptide, modulating synaptic transmission + 2
              trans-synaptic signaling by soluble gas, modulating synaptic transmission + 2
              trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission 3
Path 2
Term Annotations click to browse term
  biological_process 20027
    cellular process 18798
      cell communication 7664
        cell-cell signaling 1738
          synaptic signaling 917
            trans-synaptic signaling 889
              anterograde trans-synaptic signaling 880
                chemical synaptic transmission 880
                  modulation of chemical synaptic transmission 656
                    trans-synaptic signaling, modulating synaptic transmission 15
                      trans-synaptic signaling by BDNF, modulating synaptic transmission + 4
                      trans-synaptic signaling by lipid, modulating synaptic transmission + 4
                      trans-synaptic signaling by neuropeptide, modulating synaptic transmission + 2
                      trans-synaptic signaling by soluble gas, modulating synaptic transmission + 2
                      trans-synaptic signaling by trans-synaptic complex, modulating synaptic transmission 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.