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ONTOLOGY REPORT - ANNOTATIONS


Term:synaptic vesicle endosomal processing
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Accession:GO:0099532 term browser browse the term
Definition:The process in which synaptic vesicles fuse to the presynaptic endosome followed by sorting of synaptic vesicle components and budding of new synaptic vesicles.
Comment:This covers processing of synaptic vesicles trafficked to synapse as well as of endocytosed vesicles as part of recycling. It is there for not part of the synaptic vesicle cycle.
Synonyms:exact_synonym: synaptic vesicle processing via endosome


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clathrin-dependent synaptic vesicle endocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Btbd8 BTB domain containing 8 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000002
(MGI:6104538|PMID:29262337)
UniProt
InterPro
RGD
PMID:29262337 GO_REF:0000002 GO_REF:0000024 MGI:6104538 NCBI chr14:3,282,422...3,351,740
Ensembl chr14:3,284,089...3,300,200
JBrowse link
G Itsn1 intersectin 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:31,943,119...32,069,249
Ensembl chr11:31,893,489...32,069,249
JBrowse link
G Itsn2 intersectin 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:30,098,378...30,208,694
Ensembl chr 6:30,098,380...30,187,337
JBrowse link
regulation of recycling endosome localization within postsynapse term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gripap1 GRIP1 associated protein 1 involved_in IMP
IDA
IBA
PMID:20098723
PMID:21873635
SynGO
GO_Central
PMID:20098723, PMID:20098723, PMID:21873635 RGD:12050105, RGD:12050105, RGD:13792537 NCBI chr  X:15,523,929...15,553,702
Ensembl chr  X:15,523,929...15,553,720
JBrowse link
synaptic vesicle budding from endosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1s2 adaptor related protein complex 1 subunit sigma 2 involved_in ISO (MGI:5617942|PMID:20203623) RGD PMID:20203623 MGI:5617942 NCBI chr  X:32,329,883...32,376,301
Ensembl chr  X:32,329,598...32,355,307
JBrowse link
G Ap3b1 adaptor related protein complex 3 subunit beta 1 involved_in ISO (MGI:6189637|PMID:11588176) RGD PMID:11588176 MGI:6189637 NCBI chr 2:24,022,815...24,227,522
Ensembl chr 2:24,024,791...24,226,224
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in IDA
ISO
IMP
IBA
PMID:22539861
(MGI:6189637|PMID:11588176)
PMID:21873635
RGD PMID:11588176, PMID:22539861, PMID:22539861, PMID:21873635 MGI:6189637, RGD:12050120, RGD:12050120, RGD:13792537 NCBI chr 7:11,838,639...11,873,992
Ensembl chr 7:11,838,639...11,873,984
JBrowse link
G Btbd8 BTB domain containing 8 involved_in ISO (MGI:6104538|PMID:29262337) RGD PMID:29262337 MGI:6104538 NCBI chr14:3,282,422...3,351,740
Ensembl chr14:3,284,089...3,300,200
JBrowse link
synaptic vesicle recycling via endosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2l1 Bcl2-like 1 involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 3:148,259,594...148,314,191
Ensembl chr 3:148,259,596...148,313,810
JBrowse link
G Btbd8 BTB domain containing 8 involved_in ISS
ISO
GO_REF:0000024
(MGI:6104538|PMID:29262337)
UniProt
RGD
PMID:29262337 GO_REF:0000024 MGI:6104538 NCBI chr14:3,282,422...3,351,740
Ensembl chr14:3,284,089...3,300,200
JBrowse link
G Dnm1l dynamin 1-like involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr11:88,830,968...88,882,271
Ensembl chr11:88,830,957...88,880,198
JBrowse link
synaptic vesicle to endosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stx12 syntaxin 12 involved_in IDA
IMP
PMID:17004320 SynGO PMID:17004320, PMID:17004320 RGD:12050136, RGD:12050136 NCBI chr 5:151,044,050...151,072,893
Ensembl chr 5:151,044,329...151,072,904
JBrowse link
G Stx6 syntaxin 6 involved_in IDA
IMP
PMID:17004320 SynGO PMID:17004320, PMID:17004320 RGD:12050136, RGD:12050136 NCBI chr13:72,804,218...72,850,757
Ensembl chr13:72,804,218...72,852,967
JBrowse link
G Vamp4 vesicle-associated membrane protein 4 involved_in IDA
IMP
PMID:17004320
PMID:26607000
SynGO PMID:17004320, PMID:26607000, PMID:26607000, PMID:17004320 RGD:12050136, RGD:11058152, RGD:11058152, RGD:12050136 NCBI chr13:80,460,699...80,483,597
Ensembl chr13:80,460,694...80,483,600
JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A involved_in IMP
IDA
PMID:17004320 SynGO PMID:17004320, PMID:17004320 RGD:12050136, RGD:12050136 NCBI chr 1:276,310,072...276,508,635
Ensembl chr 1:276,309,927...276,490,602
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19634
    cellular process 18481
      vesicle-mediated transport 1670
        endosomal transport 232
          synaptic vesicle endosomal processing 13
            endocytosed synaptic vesicle processing via endosome 0
            synaptic vesicle recycling via endosome + 9
            synaptic vesicle to endosome fusion + 4
Path 2
Term Annotations click to browse term
  biological_process 19634
    localization 6435
      establishment of localization 4860
        establishment of localization in cell 2171
          intracellular transport 1507
            endosomal transport 232
              synaptic vesicle endosomal processing 13
                endocytosed synaptic vesicle processing via endosome 0
                synaptic vesicle recycling via endosome + 9
                synaptic vesicle to endosome fusion + 4
paths to the root