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ONTOLOGY REPORT - ANNOTATIONS

Term:synaptic vesicle endosomal processing
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Accession:GO:0099532 term browser browse the term
Definition:The process in which synaptic vesicles fuse to the presynaptic endosome followed by sorting of synaptic vesicle components and budding of new synaptic vesicles.
Comment:This covers processing of synaptic vesicles trafficked to synapse as well as of endocytosed vesicles as part of recycling. It is there for not part of the synaptic vesicle cycle.
Synonyms:exact_synonym: synaptic vesicle processing via endosome


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synaptic vesicle endosomal processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsd cathepsin D involved_in IDA
IMP		 PMID:31340140 SynGO PMID:31340140 PMID:31340140 RGD:155230699, RGD:155230699 NCBI chr 1:197,527,467...197,539,343
Ensembl chr 1:197,527,467...197,539,488 		JBrowse link
G Rab11a RAB11a, member RAS oncogene family involved_in IMP
EXP
IDA		 PMID:30301801 SynGO PMID:30301801 PMID:30301801 PMID:30301801 RGD:405650222, RGD:405650222, RGD:405650222 NCBI chr 8:65,223,698...65,246,461
Ensembl chr 8:65,222,949...65,246,525 		JBrowse link
clathrin-dependent synaptic vesicle endocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Itsn1 intersectin 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:30,978,590...31,160,645
Ensembl chr11:30,978,590...31,160,645 		JBrowse link
G Itsn2 intersectin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:27,616,645...27,727,373
Ensembl chr 6:27,600,406...27,727,124 		JBrowse link
regulation of recycling endosome localization within postsynapse term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gripap1 GRIP1 associated protein 1 involved_in IMP
IBA
IDA		 PMID:20098723
GO_REF:0000033		 GO_Central PMID:20098723 PMID:20098723 GO_REF:0000033, RGD:12050105, RGD:12050105 NCBI chr  X:14,678,896...14,708,747
Ensembl chr  X:14,678,898...14,708,679 		JBrowse link
synaptic vesicle budding from endosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap1g1 adaptor related protein complex 1 subunit gamma 1 involved_in IDA
IMP		 PMID:22539861 SynGO PMID:22539861 PMID:22539861 RGD:12050120, RGD:12050120 NCBI chr19:37,744,633...37,831,134
Ensembl chr19:37,744,633...37,829,167 		JBrowse link
G Ap1s2 adaptor related protein complex 1 subunit sigma 2 involved_in ISO (PMID:20203623) RGD PMID:20203623 NCBI chr  X:30,572,746...30,598,961
Ensembl chr  X:30,572,751...30,597,262 		JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in IDA
ISO
IBA
IMP		 PMID:22539861
(PMID:11588176)
GO_REF:0000033		 RGD
GO_Central		 PMID:11588176 PMID:22539861 PMID:22539861 GO_REF:0000033, RGD:12050120, RGD:12050120 NCBI chr 7:8,970,249...9,005,651
Ensembl chr 7:8,970,291...9,005,643 		JBrowse link
G Btbd8 BTB domain containing 8 involved_in ISO (PMID:29262337) RGD PMID:29262337 NCBI chr14:2,265,187...2,338,426
Ensembl chr14:2,266,454...2,334,393 		JBrowse link
synaptic vesicle recycling via endosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2l1 Bcl2-like 1 involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 3:141,253,508...141,304,582
Ensembl chr 3:141,253,523...141,303,479 		JBrowse link
G Dnm1l dynamin 1-like involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr11:84,581,216...84,632,382
Ensembl chr11:84,581,216...84,631,482 		JBrowse link
G Myo5b myosin Vb involved_in IMP
IDA		 PMID:18984164 SynGO PMID:18984164 PMID:18984164 RGD:11533643, RGD:11533643 NCBI chr18:68,038,759...68,341,568
Ensembl chr18:68,038,759...68,338,745 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in IDA
EXP		 PMID:29950309 SynGO PMID:29950309 PMID:29950309 RGD:405650288, RGD:405650288 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889 		JBrowse link
synaptic vesicle to endosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stx12 syntaxin 12 involved_in IDA
IMP		 PMID:17004320 SynGO PMID:17004320 PMID:17004320 RGD:12050136, RGD:12050136 NCBI chr 5:145,062,978...145,092,423
Ensembl chr 5:145,063,587...145,092,377 		JBrowse link
G Stx6 syntaxin 6 involved_in IDA
IMP		 PMID:17004320 SynGO PMID:17004320 PMID:17004320 RGD:12050136, RGD:12050136 NCBI chr13:67,332,329...67,378,580
Ensembl chr13:67,332,314...67,378,576 		JBrowse link
G Stx7 syntaxin 7 involved_in ISO (PMID:34408265) RGD PMID:34408265 NCBI chr 1:21,197,075...21,237,320
Ensembl chr 1:21,197,075...21,237,279 		JBrowse link
G Vamp4 vesicle-associated membrane protein 4 involved_in IDA
IEP
IMP		 PMID:17004320
PMID:26607000		 SynGO PMID:17004320 PMID:26607000 PMID:17004320 PMID:26607000 PMID:26607000 RGD:12050136, RGD:11058152, RGD:12050136, RGD:11058152, RGD:11058152 NCBI chr13:74,919,872...74,942,791
Ensembl chr13:74,919,880...74,933,686 		JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A involved_in IMP
IDA		 PMID:17004320 SynGO PMID:17004320 PMID:17004320 RGD:12050136, RGD:12050136 NCBI chr 1:254,356,343...254,661,854
Ensembl chr 1:254,356,429...254,661,852 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20115
    cellular process 18524
      vesicle-mediated transport 1638
        endosomal transport 294
          synaptic vesicle endosomal processing 18
            endocytosed synaptic vesicle processing via endosome 0
            synaptic vesicle recycling via endosome + 11
            synaptic vesicle to endosome fusion + 5
Path 2
Term Annotations click to browse term
  biological_process 20115
    localization 5683
      establishment of localization 4990
        establishment of localization in cell 2144
          intracellular transport 1404
            endosomal transport 294
              synaptic vesicle endosomal processing 18
                endocytosed synaptic vesicle processing via endosome 0
                synaptic vesicle recycling via endosome + 11
                synaptic vesicle to endosome fusion + 5
paths to the root