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ONTOLOGY REPORT - ANNOTATIONS

Term:dense core granule cytoskeletal transport
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Accession:GO:0099519 term browser browse the term
Definition:The directed movement of dense core granules along cytoskeletal fibers, such as microtubules or actin filaments.
Synonyms:exact_synonym: dense core vesicle cytoskeletal trafficking


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dense core granule cytoskeletal transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIF1A kinesin family member 1A involved_in ISO PMID:30021165
PMID:29166604		 UniProt PMID:29166604 PMID:30021165 RGD:14995321 RGD:15023486 NCBI chr15:139,610,624...139,694,841
Ensembl chr15:139,610,627...139,694,826 		JBrowse link
G PPFIA2 PTPRF interacting protein alpha 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:99,818,591...100,279,029
Ensembl chr 5:99,819,430...100,279,030 		JBrowse link
G SYT4 synaptotagmin 4 involved_in ISO PMID:29166604
(PMID:29166604)		 UniProt PMID:29166604 RGD:15023486 NCBI chr 6:127,382,248...127,392,258
Ensembl chr 6:127,382,263...127,392,164 		JBrowse link
G TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 involved_in ISO PMID:30021165 UniProt PMID:30021165 RGD:14995321 NCBI chr12:15,448,584...15,813,831
Ensembl chr12:15,453,241...15,813,469 		JBrowse link
anterograde neuronal dense core vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIF1A kinesin family member 1A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr15:139,610,624...139,694,841
Ensembl chr15:139,610,627...139,694,826 		JBrowse link
G KIF1B kinesin family member 1B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 6:70,495,143...70,663,464
Ensembl chr 6:70,495,144...70,661,798 		JBrowse link
G KIF1C kinesin family member 1C involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr12:51,899,762...51,924,465
Ensembl chr12:51,897,494...51,924,432 		JBrowse link
G SYBU syntabulin ISO RGD PMID:17611281 RGD:13217407 NCBI chr 4:27,899,264...27,975,389
Ensembl chr 4:27,901,097...27,974,660 		JBrowse link
positive regulation of anterograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAP2 microtubule associated protein 2 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr15:112,156,578...112,462,932
Ensembl chr15:112,236,119...112,462,929 		JBrowse link
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chr  X:124,735,523...124,789,063
Ensembl chr  X:124,735,656...124,738,659 		JBrowse link
G TRIM46 tripartite motif containing 46 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 4:94,632,073...94,642,756
Ensembl chr 4:94,632,077...94,642,705 		JBrowse link
positive regulation of retrograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chr  X:124,735,523...124,789,063
Ensembl chr  X:124,735,656...124,738,659 		JBrowse link
retrograde neuronal dense core vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIF1A kinesin family member 1A involved_in IBA GO_Central GO_REF:0000033 NCBI chr15:139,610,624...139,694,841
Ensembl chr15:139,610,627...139,694,826 		JBrowse link
G KIF1B kinesin family member 1B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 6:70,495,143...70,663,464
Ensembl chr 6:70,495,144...70,661,798 		JBrowse link
G KIF1C kinesin family member 1C involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:51,899,762...51,924,465
Ensembl chr12:51,897,494...51,924,432 		JBrowse link
G KIF5A kinesin family member 5A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 5:22,813,617...22,851,976
Ensembl chr 5:22,816,854...22,851,973 		JBrowse link
G KIF5B kinesin family member 5B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr10:42,637,105...42,693,551
Ensembl chr10:42,637,109...42,693,491 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17668
    cellular process 17206
      cellular localization 3494
        intracellular transport 1310
          cytoskeleton-dependent intracellular transport 196
            vesicle cytoskeletal trafficking 63
              dense core granule cytoskeletal transport 12
                anterograde neuronal dense core vesicle transport + 7
                retrograde neuronal dense core vesicle transport + 6
Path 2
Term Annotations click to browse term
  biological_process 17668
    localization 5353
      cellular localization 3494
        establishment of localization in cell 2031
          intracellular transport 1310
            cytoskeleton-dependent intracellular transport 196
              vesicle cytoskeletal trafficking 63
                dense core granule cytoskeletal transport 12
                  anterograde neuronal dense core vesicle transport + 7
                  retrograde neuronal dense core vesicle transport + 6
paths to the root