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ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle cytoskeletal trafficking
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Accession:GO:0099518 term browser browse the term
Definition:The directed movement of a vesicle along a cytoskeletal fiber such as a microtubule or and actin filament, mediated by motor proteins.
Synonyms:exact_synonym: cytoskeletal fiber-based vesicle localization;   vesicle cytoskeletal transport


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vesicle cytoskeletal trafficking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc186 coiled-coil domain containing 186 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:27293546) Ensembl
MGI
TreeGrafter
PMID:27293546 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936486:4,466,036...4,511,690
Ensembl chrNW_004936486:4,469,896...4,511,741
JBrowse link
G F8a1 coagulation factor VIII associated 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936927:234,162...236,881 JBrowse link
anterograde neuronal dense core vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif1a kinesin family member 1A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936745:911,651...976,878
Ensembl chrNW_004936745:911,709...974,199
JBrowse link
G Kif1b kinesin family member 1B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936623:4,091,093...4,222,510
Ensembl chrNW_004936623:4,091,190...4,218,251
JBrowse link
G Kif1c kinesin family member 1C involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936677:2,696,385...2,720,959
Ensembl chrNW_004936677:2,696,209...2,720,959
JBrowse link
G Sybu syntabulin ISO RGD PMID:17611281 RGD:13217407 NCBI chrNW_004936470:35,332,243...35,439,095
Ensembl chrNW_004936470:35,332,452...35,438,204
JBrowse link
anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936549:5,964,240...6,205,245
Ensembl chrNW_004936549:5,965,143...6,204,379
JBrowse link
G Ap3b2 adaptor related protein complex 3 subunit beta 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936483:17,301,969...17,336,962
Ensembl chrNW_004936483:17,298,291...17,337,578
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936588:1,223,646...1,262,577
Ensembl chrNW_004936588:1,222,466...1,262,676
JBrowse link
G Ap3m1 adaptor related protein complex 3 subunit mu 1 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004936521:5,023,896...5,050,822 JBrowse link
G Ap3m2 adaptor related protein complex 3 subunit mu 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936785:503,615...525,361
Ensembl chrNW_004936785:508,848...525,391
JBrowse link
G Ap3s1 adaptor related protein complex 3 subunit sigma 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936742:1,007,684...1,088,272
Ensembl chrNW_004936742:1,007,973...1,088,394
JBrowse link
G Ap3s2 adaptor related protein complex 3 subunit sigma 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:15,613,474...15,660,862
Ensembl chrNW_004936483:15,613,474...15,660,838
JBrowse link
G Bloc1s1 biogenesis of lysosomal organelles complex 1 subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:186,422...190,870
Ensembl chrNW_004936646:186,031...190,915
JBrowse link
G Bloc1s2 biogenesis of lysosomal organelles complex 1 subunit 2 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004939661:2,128...6,384 JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex 1 subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936706:1,702,154...1,704,366
Ensembl chrNW_004936706:1,684,824...1,706,544
JBrowse link
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936477:18,618,330...18,619,512
Ensembl chrNW_004936477:18,618,499...18,619,140
JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936534:4,550,592...4,584,482
Ensembl chrNW_004936534:4,550,592...4,584,482
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:8,209,091...8,226,249
Ensembl chrNW_004936471:8,209,057...8,226,353
JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004936552:1,787,687...1,926,516 JBrowse link
G Kif1a kinesin family member 1A involved_in ISO (PMID:7539720) SynGO PMID:7539720 NCBI chrNW_004936745:911,651...976,878
Ensembl chrNW_004936745:911,709...974,199
JBrowse link
G Madd MAP kinase activating death domain involved_in ISO (PMID:18849981) SynGO PMID:18849981 NCBI chrNW_004936562:1,891,120...1,936,559
Ensembl chrNW_004936562:1,892,033...1,932,418
JBrowse link
G Snapin SNAP associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936580:3,449,585...3,464,709
Ensembl chrNW_004936580:3,462,987...3,464,214
JBrowse link
G Trim46 tripartite motif containing 46 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:26671463) Ensembl
MGI
TreeGrafter
PMID:26671463 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936580:4,678,855...4,690,222
Ensembl chrNW_004936580:4,678,827...4,690,236
JBrowse link
dense core granule cytoskeletal transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif1a kinesin family member 1A involved_in ISO PMID:30021165
PMID:29166604
UniProt PMID:29166604 PMID:30021165 RGD:14995321 RGD:15023486 NCBI chrNW_004936745:911,651...976,878
Ensembl chrNW_004936745:911,709...974,199
JBrowse link
G Ppfia2 PTPRF interacting protein alpha 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936698:2,090,768...2,531,366
Ensembl chrNW_004936698:2,094,374...2,531,465
JBrowse link
G Syt4 synaptotagmin 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936517:3,035,840...3,044,065
Ensembl chrNW_004936517:3,035,521...3,047,964
JBrowse link
G Tanc2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 involved_in ISO PMID:30021165 UniProt PMID:30021165 RGD:14995321 NCBI chrNW_004936541:3,702,743...4,115,009
Ensembl chrNW_004936541:3,744,687...4,115,007
JBrowse link
negative regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnih2 cornichon family AMPA receptor auxiliary protein 2 involved_in ISO PMID:24094107 UniProt PMID:24094107 RGD:10400859 NCBI chrNW_004936599:3,310,873...3,316,575
Ensembl chrNW_004936599:3,310,872...3,316,573
JBrowse link
plus-end-directed vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936596:3,938...81,226
Ensembl chrNW_004936596:3,720...81,257
JBrowse link
G Kif13a kinesin family member 13A involved_in ISO (MGI:5142383|PMID:11106728) UniProt PMID:11106728 MGI:5142383 NCBI chrNW_004936552:3,612,104...3,723,275
Ensembl chrNW_004936552:3,613,657...3,722,973
JBrowse link
G Kif5b kinesin family member 5B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17360972) Ensembl
MGI
PMID:17360972 GO_REF:0000107 NCBI chrNW_004936574:780,074...823,858
Ensembl chrNW_004936574:779,777...823,970
JBrowse link
positive regulation of anterograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Map2 microtubule associated protein 2 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936845:475,406...752,600
Ensembl chrNW_004936845:473,366...545,135
JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chrNW_004936809:902,938...967,771
Ensembl chrNW_004936809:911,764...966,839
JBrowse link
G Trim46 tripartite motif containing 46 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936580:4,678,855...4,690,222
Ensembl chrNW_004936580:4,678,827...4,690,236
JBrowse link
positive regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Borcs5 BLOC-1 related complex subunit 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936587:4,806,537...4,906,301
Ensembl chrNW_004936587:4,806,113...4,906,411
JBrowse link
G Map2 microtubule associated protein 2 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936845:475,406...752,600
Ensembl chrNW_004936845:473,366...545,135
JBrowse link
positive regulation of retrograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chrNW_004936809:902,938...967,771
Ensembl chrNW_004936809:911,764...966,839
JBrowse link
positive regulation of vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stk11 serine/threonine kinase 11 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936588:579,816...601,033
Ensembl chrNW_004936588:579,816...603,654
JBrowse link
retrograde neuronal dense core vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif1a kinesin family member 1A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936745:911,651...976,878
Ensembl chrNW_004936745:911,709...974,199
JBrowse link
G Kif1b kinesin family member 1B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936623:4,091,093...4,222,510
Ensembl chrNW_004936623:4,091,190...4,218,251
JBrowse link
G Kif1c kinesin family member 1C involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936677:2,696,385...2,720,959
Ensembl chrNW_004936677:2,696,209...2,720,959
JBrowse link
G Kif5a kinesin family member 5A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936646:1,697,531...1,730,376
Ensembl chrNW_004936646:1,697,492...1,732,832
JBrowse link
G Kif5b kinesin family member 5B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004936574:780,074...823,858
Ensembl chrNW_004936574:779,777...823,970
JBrowse link
vesicle transport along actin filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn4 actinin alpha 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936801:1,333,077...1,402,885
Ensembl chrNW_004936801:1,333,077...1,404,054
JBrowse link
G Fnbp1l formin binding protein 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936537:5,671,517...5,789,480
Ensembl chrNW_004936537:5,671,331...5,790,054
JBrowse link
G LOC101976892 myosin-6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004938047:7...11,037 JBrowse link
G Myo19 myosin XIX involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936490:1,679,092...1,706,976
Ensembl chrNW_004936490:1,679,187...1,706,976
JBrowse link
G Myo1a myosin IA involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936646:1,238,630...1,258,491
Ensembl chrNW_004936646:1,238,865...1,258,040
JBrowse link
G Myo1b myosin IB involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936506:6,832,132...7,004,262
Ensembl chrNW_004936506:6,832,670...7,004,273
JBrowse link
G Myo1c myosin IC involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12490950) Ensembl
MGI
TreeGrafter
PMID:12490950 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936538:7,614,985...7,639,603
Ensembl chrNW_004936538:7,611,008...7,639,581
JBrowse link
G Myo1d myosin ID involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936538:2,102,192...2,408,953
Ensembl chrNW_004936538:2,102,186...2,408,954
JBrowse link
G Myo1e myosin IE involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:20,244,424...20,435,604
Ensembl chrNW_004936471:20,244,397...20,435,648
JBrowse link
G Myo1f myosin IF involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936588:5,299,977...5,331,065
Ensembl chrNW_004936588:5,302,018...5,336,345
JBrowse link
G Myo1g myosin IG involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936478:19,788,032...19,802,546
Ensembl chrNW_004936478:19,788,031...19,802,501
JBrowse link
G Myo1h myosin IH involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936769:1,134,076...1,171,040
Ensembl chrNW_004936769:1,109,753...1,171,040
JBrowse link
G Myo5a myosin VA involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
PMID:11470781 PMID:16190983 GO_REF:0000107 GO_REF:0000118 RGD:1600832 RGD:2306437 NCBI chrNW_004936471:14,105,832...14,257,386
Ensembl chrNW_004936471:14,111,841...14,254,246
JBrowse link
G Myo5b myosin VB involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936497:12,932,367...13,236,916
Ensembl chrNW_004936497:12,932,789...13,234,244
JBrowse link
G Myo5c myosin VC involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936471:14,003,478...14,094,560
Ensembl chrNW_004936471:14,003,515...14,094,587
JBrowse link
G Myo6 myosin VI involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936788:1,125,332...1,264,372
Ensembl chrNW_004936788:1,174,544...1,262,746
JBrowse link
G Wasl WASP like actin nucleation promoting factor involved_in ISO PMID:20730103 BHF-UCL PMID:20730103 RGD:8554834 NCBI chrNW_004936605:1,741,832...1,816,694
Ensembl chrNW_004936605:1,742,776...1,816,690
JBrowse link
vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bicdl1 BICD family like cargo adaptor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936668:812,780...904,879
Ensembl chrNW_004936668:813,622...904,883
JBrowse link
G Bicdl2 BICD family like cargo adaptor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936694:1,136,862...1,144,045
Ensembl chrNW_004936694:1,138,125...1,143,787
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936501:11,955,334...11,967,338
Ensembl chrNW_004936501:11,955,184...11,967,436
JBrowse link
G Dync1i1 dynein cytoplasmic 1 intermediate chain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936585:4,232,428...4,496,878
Ensembl chrNW_004936585:4,231,711...4,527,145
JBrowse link
G Hap1 huntingtin associated protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15242649) Ensembl
MGI
TreeGrafter
PMID:15242649 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936490:16,645,116...16,652,310
Ensembl chrNW_004936490:16,643,520...16,652,479
JBrowse link
G Kif5b kinesin family member 5B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17360972) Ensembl
MGI
PMID:17360972 GO_REF:0000107 NCBI chrNW_004936574:780,074...823,858
Ensembl chrNW_004936574:779,777...823,970
JBrowse link
G LOC101966195 huntingtin involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15242649) Ensembl
MGI
PMID:15242649 GO_REF:0000107 NCBI chrNW_004936477:20,443,101...20,577,167
Ensembl chrNW_004936477:20,443,113...20,577,071
Ensembl chrNW_004936477:20,443,113...20,577,071
JBrowse link
G LOC101974646 nuclear distribution protein nudE-like 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936496:7,323,455...7,325,655 JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 ISO positive regulation of bidirectional melanosome transport along microtubules RGD PMID:15753041 RGD:2293208 NCBI chrNW_004936471:26,589,251...26,628,302
Ensembl chrNW_004936471:26,589,161...26,628,302
JBrowse link
G Nde1 nudE neurodevelopment protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16107726) Ensembl
MGI
TreeGrafter
PMID:16107726 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936501:3,193,962...3,234,640
Ensembl chrNW_004936501:3,193,916...3,221,700
JBrowse link
G Ndel1 nudE neurodevelopment protein 1 like 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16107726) TreeGrafter
MGI
PMID:16107726 GO_REF:0000118 NCBI chrNW_004936595:1,656,956...1,692,775
Ensembl chrNW_004936595:1,656,956...1,689,322
JBrowse link
G Pafah1b1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16107726) Ensembl
MGI
TreeGrafter
PMID:16107726 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936538:8,612,142...8,693,698
Ensembl chrNW_004936538:8,612,049...8,694,015
JBrowse link
G Prkcz protein kinase C zeta ISO Slc10a1/Ntcp-containing early endosomes RGD PMID:16734659 RGD:1642664 NCBI chrNW_004936737:1,303,502...1,383,135
Ensembl chrNW_004936737:1,303,887...1,321,944
JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO (PMID:21303926) UniProt PMID:21303926 RGD:8554665 NCBI chrNW_004936491:9,858,645...9,891,674 JBrowse link
G Rasgrp1 RAS guanyl releasing protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17190838) Ensembl
MGI
PMID:17190838 GO_REF:0000107 NCBI chrNW_004936471:2,152,231...2,222,260
Ensembl chrNW_004936471:2,153,880...2,222,229
JBrowse link
G Trak2 trafficking kinesin protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936726:649,413...708,816
Ensembl chrNW_004936726:649,418...708,820
JBrowse link
G Vamp7 vesicle associated membrane protein 7 involved_in ISO PMID:22705394 UniProt PMID:22705394 RGD:10047362 NCBI chrNW_004936958:345,055...393,384 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15871
    localization 5129
      establishment of localization 4439
        establishment of organelle localization 466
          establishment of vesicle localization 183
            vesicle cytoskeletal trafficking 68
              dense core granule cytoskeletal transport + 12
              synaptic vesicle cytoskeletal transport + 21
              vesicle transport along actin filament + 17
              vesicle transport along microtubule + 46
Path 2
Term Annotations click to browse term
  biological_process 15871
    localization 5129
      establishment of localization 4439
        transport 4141
          intracellular transport 1308
            cytoskeleton-dependent intracellular transport 201
              vesicle cytoskeletal trafficking 68
                dense core granule cytoskeletal transport + 12
                synaptic vesicle cytoskeletal transport + 21
                vesicle transport along actin filament + 17
                vesicle transport along microtubule + 46
paths to the root