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ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle cytoskeletal trafficking
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Accession:GO:0099518 term browser browse the term
Definition:The directed movement of a vesicle along a cytoskeletal fiber such as a microtubule or and actin filament, mediated by motor proteins.
Synonyms:exact_synonym: cytoskeletal fiber-based vesicle localization;   vesicle cytoskeletal transport


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vesicle cytoskeletal trafficking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc186 coiled-coil domain containing 186 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:27293546) TreeGrafter
MGI
PMID:27293546 GO_REF:0000118 NCBI chrNW_004624737:32,414,873...32,463,887
Ensembl chrNW_004624737:32,414,801...32,464,935
JBrowse link
anterograde neuronal dense core vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif1a kinesin family member 1A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004624847:4,961,552...5,035,125
Ensembl chrNW_004624847:4,961,552...5,035,061
JBrowse link
G Kif1b kinesin family member 1B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004624818:2,282,999...2,428,586
Ensembl chrNW_004624818:2,282,999...2,428,563
JBrowse link
G Kif1c kinesin family member 1C involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004624786:8,845,352...8,868,681
Ensembl chrNW_004624786:8,845,033...8,869,577
JBrowse link
G Sybu syntabulin ISO RGD PMID:17611281 RGD:13217407 NCBI chrNW_004624763:8,657,276...8,742,161
Ensembl chrNW_004624763:8,657,285...8,766,586
JBrowse link
anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624869:2,459,370...2,741,529
Ensembl chrNW_004624869:2,459,947...2,741,328
JBrowse link
G Ap3b2 adaptor related protein complex 3 subunit beta 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624768:18,476,562...18,507,933
Ensembl chrNW_004624768:18,476,447...18,507,998
JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:6,710,081...6,750,315
Ensembl chrNW_004624828:6,710,025...6,749,434
JBrowse link
G Ap3m1 adaptor related protein complex 3 subunit mu 1 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004624754:7,591,811...7,612,695
Ensembl chrNW_004624754:7,592,155...7,612,696
JBrowse link
G Ap3m2 adaptor related protein complex 3 subunit mu 2 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004624780:1,054,796...1,091,688
Ensembl chrNW_004624780:1,068,498...1,086,551
JBrowse link
G Ap3s1 adaptor related protein complex 3 subunit sigma 1 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004624733:5,979,644...6,045,777
Ensembl chrNW_004624733:5,979,734...6,045,721
JBrowse link
G Bloc1s1 biogenesis of lysosomal organelles complex 1 subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624802:12,299,866...12,304,295
Ensembl chrNW_004624802:12,290,688...12,304,712
JBrowse link
G Bloc1s2 biogenesis of lysosomal organelles complex 1 subunit 2 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004624737:12,095,175...12,101,595
Ensembl chrNW_004624737:12,094,309...12,102,030
JBrowse link
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624755:23,031,649...23,033,282 JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004624756:17,595,404...17,628,972
Ensembl chrNW_004624756:17,595,470...17,631,433
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004624731:13,775,414...13,789,380
Ensembl chrNW_004624731:13,777,656...13,785,366
JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:10,810,368...10,932,801
Ensembl chrNW_004624756:10,810,413...10,942,034
JBrowse link
G Kif1a kinesin family member 1A involved_in ISO (PMID:7539720) SynGO PMID:7539720 NCBI chrNW_004624847:4,961,552...5,035,125
Ensembl chrNW_004624847:4,961,552...5,035,061
JBrowse link
G Madd MAP kinase activating death domain involved_in ISO (PMID:18849981) SynGO PMID:18849981 NCBI chrNW_004624767:1,421,603...1,459,738
Ensembl chrNW_004624767:1,421,603...1,459,507
JBrowse link
G Snapin SNAP associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624885:3,490,321...3,491,963
Ensembl chrNW_004624885:3,490,321...3,491,946
JBrowse link
G Trim46 tripartite motif containing 46 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:26671463) TreeGrafter
MGI
PMID:26671463 GO_REF:0000118 NCBI chrNW_004624885:2,344,250...2,354,390
Ensembl chrNW_004624885:2,343,991...2,354,288
JBrowse link
dense core granule cytoskeletal transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif1a kinesin family member 1A involved_in ISO PMID:30021165
PMID:29166604
UniProt PMID:29166604 PMID:30021165 RGD:14995321 RGD:15023486 NCBI chrNW_004624847:4,961,552...5,035,125
Ensembl chrNW_004624847:4,961,552...5,035,061
JBrowse link
G Ppfia2 PTPRF interacting protein alpha 2 involved_in ISO (PMID:30021165) UniProt PMID:30021165 NCBI chrNW_004624837:627,484...1,116,597
Ensembl chrNW_004624837:629,302...1,111,081
JBrowse link
G Syt4 synaptotagmin 4 involved_in ISO PMID:29166604
(MGI:6104122|PMID:29166604)
UniProt PMID:29166604 MGI:6104122 RGD:15023486 NCBI chrNW_004624779:17,593,760...17,603,217
Ensembl chrNW_004624779:17,592,669...17,603,403
JBrowse link
G Tanc2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 involved_in ISO PMID:30021165 UniProt PMID:30021165 RGD:14995321 NCBI chrNW_004624849:452,848...946,511
Ensembl chrNW_004624849:452,884...940,686
JBrowse link
negative regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnih2 cornichon family AMPA receptor auxiliary protein 2 involved_in ISO PMID:24094107 UniProt PMID:24094107 RGD:10400859 NCBI chrNW_004624767:20,084,526...20,090,225
Ensembl chrNW_004624767:20,084,501...20,090,209
JBrowse link
plus-end-directed vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:74,923,072...74,982,882
Ensembl chrNW_004624730:74,923,027...74,982,990
JBrowse link
G Kif13a kinesin family member 13A involved_in ISO (MGI:5142383|PMID:11106728) UniProt PMID:11106728 MGI:5142383 NCBI chrNW_004624756:8,667,592...8,865,032
Ensembl chrNW_004624756:8,667,676...8,863,427
JBrowse link
G Kif5b kinesin family member 5B acts_upstream_of_or_within ISO (PMID:17360972) MGI PMID:17360972 NCBI chrNW_004624805:4,464,538...4,514,784
Ensembl chrNW_004624805:4,465,235...4,514,870
JBrowse link
positive regulation of anterograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Map2 microtubule associated protein 2 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004624765:6,476,544...6,758,959
Ensembl chrNW_004624765:6,476,346...6,546,116
JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chrNW_004624946:620,581...685,339
Ensembl chrNW_004624946:628,284...685,246
JBrowse link
G Trim46 tripartite motif containing 46 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004624885:2,344,250...2,354,390
Ensembl chrNW_004624885:2,343,991...2,354,288
JBrowse link
positive regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Borcs5 BLOC-1 related complex subunit 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624752:25,418,206...25,504,658
Ensembl chrNW_004624752:25,382,796...25,504,989
JBrowse link
G Map2 microtubule associated protein 2 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004624765:6,476,544...6,758,959
Ensembl chrNW_004624765:6,476,346...6,546,116
JBrowse link
positive regulation of retrograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chrNW_004624946:620,581...685,339
Ensembl chrNW_004624946:628,284...685,246
JBrowse link
positive regulation of vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stk11 serine/threonine kinase 11 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:7,444,339...7,466,926
Ensembl chrNW_004624828:7,445,069...7,467,298
JBrowse link
retrograde neuronal dense core vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif1a kinesin family member 1A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004624847:4,961,552...5,035,125
Ensembl chrNW_004624847:4,961,552...5,035,061
JBrowse link
G Kif1b kinesin family member 1B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004624818:2,282,999...2,428,586
Ensembl chrNW_004624818:2,282,999...2,428,563
JBrowse link
G Kif1c kinesin family member 1C involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004624786:8,845,352...8,868,681
Ensembl chrNW_004624786:8,845,033...8,869,577
JBrowse link
G Kif5a kinesin family member 5A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004624802:10,375,132...10,409,575
Ensembl chrNW_004624802:10,375,774...10,409,566
JBrowse link
G Kif5b kinesin family member 5B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004624805:4,464,538...4,514,784
Ensembl chrNW_004624805:4,465,235...4,514,870
JBrowse link
vesicle transport along actin filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn4 actinin alpha 4 involved_in ISO (PMID:25918384) UniProt PMID:25918384 NCBI chrNW_004624794:12,042,627...12,113,762
Ensembl chrNW_004624794:12,042,533...12,113,886
JBrowse link
G Fnbp1l formin binding protein 1 like involved_in ISO (PMID:20730103) BHF-UCL PMID:20730103 NCBI chrNW_004624742:4,061,342...4,211,201
Ensembl chrNW_004624742:4,076,926...4,157,578
JBrowse link
G Myo1a myosin IA involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624802:10,892,685...10,913,953
Ensembl chrNW_004624802:10,892,774...10,913,952
JBrowse link
G Myo1b myosin IB involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624854:4,738,061...4,896,030 JBrowse link
G Myo1c myosin IC acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:12490950) MGI
TreeGrafter
PMID:12490950 GO_REF:0000118 NCBI chrNW_004624786:4,188,143...4,211,712
Ensembl chrNW_004624786:4,188,143...4,211,732
JBrowse link
G Myo1d myosin ID involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624875:544,065...877,958
Ensembl chrNW_004624875:543,260...877,953
JBrowse link
G Myo1e myosin IE involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624781:12,682,614...12,866,990
Ensembl chrNW_004624781:12,682,514...12,871,099
JBrowse link
G Myo1f myosin IF involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:1,269,287...1,307,676
Ensembl chrNW_004624828:1,269,610...1,307,443
JBrowse link
G Myo1h myosin IH involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:10,978,231...11,056,726
Ensembl chrNW_004624747:10,978,830...11,056,618
JBrowse link
G Myo5a myosin VA involved_in ISO
IEA
RGD
TreeGrafter
PMID:11470781 PMID:16190983 GO_REF:0000118 RGD:1600832 RGD:2306437 NCBI chrNW_004624731:8,114,557...8,280,586
Ensembl chrNW_004624731:8,113,715...8,280,823
JBrowse link
G Myo5c myosin VC involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624731:8,288,954...8,358,447
Ensembl chrNW_004624731:8,289,051...8,353,346
JBrowse link
G Myo6 myosin VI involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624819:2,835,783...2,999,819
Ensembl chrNW_004624819:2,896,374...2,999,819
JBrowse link
G Wasl WASP like actin nucleation promoting factor involved_in ISO PMID:20730103 BHF-UCL PMID:20730103 RGD:8554834 NCBI chrNW_004624783:12,239,467...12,322,403
Ensembl chrNW_004624783:12,254,715...12,323,232
JBrowse link
vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bicdl1 BICD family like cargo adaptor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:13,539,268...13,646,414
Ensembl chrNW_004624747:13,540,530...13,646,381
JBrowse link
G Bicdl2 BICD family like cargo adaptor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624824:772,466...779,707
Ensembl chrNW_004624824:772,471...779,192
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:22261744) UniProt PMID:22261744 NCBI chrNW_004624782:12,995,277...13,004,980
Ensembl chrNW_004624782:12,995,277...13,005,087
JBrowse link
G Dync1i1 dynein cytoplasmic 1 intermediate chain 1 involved_in ISO (PMID:24561039)
PMID:14985359
UniProt
HGNC-UCL
PMID:14985359 PMID:24561039 RGD:8553555 NCBI chrNW_004624813:2,490,745...2,826,230
Ensembl chrNW_004624813:2,490,706...2,825,412
JBrowse link
G Htt huntingtin involved_in
acts_upstream_of_or_within
ISO (PMID:20515468)
(PMID:15242649)
UniProt
MGI
PMID:15242649 PMID:20515468 NCBI chrNW_004624755:24,602,955...24,729,584
Ensembl chrNW_004624755:24,603,490...24,729,333
JBrowse link
G Kif5b kinesin family member 5B involved_in
acts_upstream_of_or_within
ISO PMID:14985359
(PMID:17360972)
(PMID:28426968)
HGNC-UCL
MGI
ARUK-UCL
PMID:14985359 PMID:17360972 PMID:28426968 RGD:8553555 NCBI chrNW_004624805:4,464,538...4,514,784
Ensembl chrNW_004624805:4,465,235...4,514,870
JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 ISO positive regulation of bidirectional melanosome transport along microtubules RGD PMID:15753041 RGD:2293208 NCBI chrNW_004624781:6,222,365...6,285,398
Ensembl chrNW_004624781:6,222,365...6,285,531
JBrowse link
G Nde1 nudE neurodevelopment protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16107726) TreeGrafter
MGI
PMID:16107726 GO_REF:0000118 NCBI chrNW_004624782:236,715...284,200
Ensembl chrNW_004624782:236,735...268,516
JBrowse link
G Ndel1 nudE neurodevelopment protein 1 like 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:16107726) MGI
TreeGrafter
PMID:16107726 GO_REF:0000118 NCBI chrNW_004624786:10,981,963...11,039,504
Ensembl chrNW_004624786:11,000,615...11,034,689
JBrowse link
G Pafah1b1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16107726) TreeGrafter
MGI
PMID:16107726 GO_REF:0000118 NCBI chrNW_004624786:5,223,890...5,306,033
Ensembl chrNW_004624786:5,224,982...5,302,436
JBrowse link
G Prkcz protein kinase C zeta ISO Slc10a1/Ntcp-containing early endosomes RGD PMID:16734659 RGD:1642664 NCBI chrNW_004624818:7,758,192...7,846,950
Ensembl chrNW_004624818:7,759,770...7,847,208
JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624762:8,420,336...8,448,478
Ensembl chrNW_004624762:8,420,305...8,449,647
JBrowse link
G Rasgrp1 RAS guanyl releasing protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:17190838) MGI
Ensembl
PMID:17190838 GO_REF:0000107 NCBI chrNW_004624804:5,691,011...5,763,314
Ensembl chrNW_004624804:5,690,400...5,763,288
JBrowse link
G Trak1 trafficking kinesin protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:77,330,449...77,470,156
Ensembl chrNW_004624730:77,331,992...77,399,741
JBrowse link
G Trak2 trafficking kinesin protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624899:275,291...335,555
Ensembl chrNW_004624899:300,096...332,392
JBrowse link
G Vamp7 vesicle associated membrane protein 7 involved_in ISO PMID:22705394 UniProt PMID:22705394 RGD:10047362 NCBI chrNW_004624980:40,937...94,547
Ensembl chrNW_004624980:40,843...94,528
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15028
    localization 4927
      establishment of localization 4263
        establishment of organelle localization 447
          establishment of vesicle localization 170
            vesicle cytoskeletal trafficking 60
              dense core granule cytoskeletal transport + 12
              synaptic vesicle cytoskeletal transport + 19
              vesicle transport along actin filament + 13
              vesicle transport along microtubule + 43
Path 2
Term Annotations click to browse term
  biological_process 15028
    localization 4927
      establishment of localization 4263
        transport 3971
          intracellular transport 1246
            cytoskeleton-dependent intracellular transport 189
              vesicle cytoskeletal trafficking 60
                dense core granule cytoskeletal transport + 12
                synaptic vesicle cytoskeletal transport + 19
                vesicle transport along actin filament + 13
                vesicle transport along microtubule + 43
paths to the root