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ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle cytoskeletal trafficking
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Accession:GO:0099518 term browser browse the term
Definition:The directed movement of a vesicle along a cytoskeletal fiber such as a microtubule or and actin filament, mediated by motor proteins.
Synonyms:exact_synonym: cytoskeletal fiber-based vesicle localization;   vesicle cytoskeletal transport



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vesicle cytoskeletal trafficking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc186 coiled-coil domain containing 186 involved_in
acts_upstream_of_or_within
IBA
IMP
(PMID:27293546) GO_Central
MGI
PMID:27293546 GO_REF:0000033 NCBI chr19:56,775,917...56,810,631
Ensembl chr19:56,775,913...56,810,622
JBrowse link
G F8a factor 8-associated gene A involved_in ISO
IBA
MGI
GO_Central
GO_REF:0000033 GO_REF:0000096 MGI:4417868 NCBI chr  X:72,271,912...72,274,401
Ensembl chr  X:72,271,897...72,274,401
JBrowse link
anterograde neuronal dense core vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif1a kinesin family member 1A involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 1:92,943,180...93,029,760
Ensembl chr 1:92,943,186...93,029,673
JBrowse link
G Kif1b kinesin family member 1B involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 4:149,260,776...149,392,762
Ensembl chr 4:149,260,776...149,392,150
JBrowse link
G Kif1c kinesin family member 1C involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr11:70,591,170...70,622,796
Ensembl chr11:70,591,374...70,622,790
JBrowse link
G Sybu syntabulin (syntaxin-interacting) involved_in ISO RGD
MGI
PMID:17611281 GO_REF:0000096 MGI:4417868 RGD:13217407 NCBI chr15:44,535,252...44,651,466
Ensembl chr15:44,535,252...44,651,459
JBrowse link
anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor-related protein complex 3, beta 1 subunit involved_in IMP
IBA
(MGI:5437407|PMID:21998198) UniProt
GO_Central
PMID:21998198 GO_REF:0000033 MGI:5437407 NCBI chr13:94,492,332...94,702,838
Ensembl chr13:94,495,468...94,702,825
JBrowse link
G Ap3b2 adaptor-related protein complex 3, beta 2 subunit involved_in IMP
IBA
(MGI:5437407|PMID:21998198) UniProt
GO_Central
PMID:21998198 GO_REF:0000033 MGI:5437407 NCBI chr 7:81,110,147...81,143,722
Ensembl chr 7:81,110,147...81,143,673
JBrowse link
G Ap3d1 adaptor-related protein complex 3, delta 1 subunit involved_in IMP
IBA
(MGI:5437407|PMID:21998198) UniProt
GO_Central
PMID:21998198 GO_REF:0000033 MGI:5437407 NCBI chr10:80,542,790...80,578,137
Ensembl chr10:80,542,790...80,578,098
JBrowse link
G Ap3m1 adaptor-related protein complex 3, mu 1 subunit involved_in IMP (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr14:21,083,810...21,102,603
Ensembl chr14:21,081,510...21,102,576
JBrowse link
G Ap3m2 adaptor-related protein complex 3, mu 2 subunit involved_in IMP (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr 8:23,277,370...23,297,308
Ensembl chr 8:23,277,370...23,295,638
JBrowse link
G Ap3s1 adaptor-related protein complex 3, sigma 1 subunit involved_in IMP (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr18:46,874,761...46,923,893
Ensembl chr18:46,874,943...46,923,893
JBrowse link
G Ap3s2 adaptor-related protein complex 3, sigma 2 subunit involved_in IMP (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr 7:79,525,073...79,570,388
Ensembl chr 7:79,525,073...79,570,397
JBrowse link
G Bloc1s1 biogenesis of lysosomal organelles complex-1, subunit 1 involved_in IMP (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr10:128,755,783...128,759,393
Ensembl chr10:128,753,751...128,759,904
JBrowse link
G Bloc1s2 biogenesis of lysosomal organelles complex-1, subunit 2 involved_in IMP (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr19:44,127,685...44,134,909
Ensembl chr19:44,127,685...44,134,885
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 involved_in IMP (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr 7:19,239,708...19,242,295
Ensembl chr 7:19,238,411...19,242,292
JBrowse link
G Bloc1s4 biogenesis of lysosomal organelles complex-1, subunit 4, cappuccino involved_in IMP (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr 5:36,904,718...36,906,023
Ensembl chr 5:36,904,722...36,905,994
JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex-1, subunit 5, muted involved_in IMP (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr13:38,786,674...38,821,093
Ensembl chr13:38,776,818...38,819,085
JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex-1, subunit 6, pallidin involved_in IMP (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr 2:122,580,425...122,591,407
Ensembl chr 2:122,580,423...122,591,395
JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 involved_in IMP
IBA
(MGI:5437407|PMID:21998198) UniProt
GO_Central
PMID:21998198 GO_REF:0000033 MGI:5437407 NCBI chr13:45,075,552...45,155,614
Ensembl chr13:45,075,551...45,155,623
JBrowse link
G Kif1a kinesin family member 1A involved_in IDA (PMID:7539720) SynGO PMID:7539720 NCBI chr 1:92,943,180...93,029,760
Ensembl chr 1:92,943,186...93,029,673
JBrowse link
G Madd MAP-kinase activating death domain involved_in IDA
IMP
(PMID:18849981) SynGO PMID:18849981 NCBI chr 2:90,967,705...91,013,404
Ensembl chr 2:90,967,705...91,014,182
JBrowse link
G Snapin SNAP-associated protein involved_in IMP (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr 3:90,395,333...90,398,320
Ensembl chr 3:90,395,333...90,398,340
JBrowse link
G Trim46 tripartite motif-containing 46 involved_in
acts_upstream_of_or_within
IBA
IMP
(PMID:26671463) GO_Central
MGI
PMID:26671463 GO_REF:0000033 NCBI chr 3:89,141,476...89,153,655
Ensembl chr 3:89,141,484...89,153,616
JBrowse link
dense core granule cytoskeletal transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif1a kinesin family member 1A involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 1:92,943,180...93,029,760
Ensembl chr 1:92,943,186...93,029,673
JBrowse link
G Ppfia2 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:106,305,129...106,769,329
Ensembl chr10:106,306,200...106,771,813
JBrowse link
G Syt4 synaptotagmin IV involved_in IMP
ISO
(MGI:6104122|PMID:29166604) UniProt
MGI
PMID:29166604 GO_REF:0000096 MGI:4417868 MGI:6104122 NCBI chr18:31,570,861...31,580,468
Ensembl chr18:31,570,861...31,580,459
JBrowse link
G Tanc2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr11:105,480,458...105,820,130
Ensembl chr11:105,480,812...105,820,130
JBrowse link
minus-end-directed vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kifc1 kinesin family member C1 acts_upstream_of_or_within IMP (PMID:17360972) MGI PMID:17360972 NCBI chr17:34,094,640...34,109,607
Ensembl chr17:34,094,633...34,109,635
JBrowse link
negative regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnih2 cornichon family AMPA receptor auxiliary protein 2 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr19:5,142,896...5,148,549
Ensembl chr19:5,142,896...5,148,549
JBrowse link
plus-end-directed vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fyco1 FYVE and coiled-coil domain containing 1 involved_in ISO
IBA
MGI
GO_Central
GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 9:123,618,565...123,681,110
Ensembl chr 9:123,618,565...123,680,964
JBrowse link
G Kif13a kinesin family member 13A involved_in IDA (MGI:5142383|PMID:11106728) UniProt PMID:11106728 MGI:5142383 NCBI chr13:46,902,563...47,083,871
Ensembl chr13:46,902,563...47,083,343
JBrowse link
G Kif5b kinesin family member 5B acts_upstream_of_or_within IMP (PMID:17360972) MGI PMID:17360972 NCBI chr18:6,201,005...6,241,524
Ensembl chr18:6,201,002...6,242,174
JBrowse link
positive regulation of anterograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Map2 microtubule-associated protein 2 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 1:66,214,337...66,481,742
Ensembl chr 1:66,214,432...66,481,742
JBrowse link
G Mecp2 methyl CpG binding protein 2 involved_in ISO RGD
MGI
PMID:22127389 GO_REF:0000096 MGI:4417868 RGD:12790715 NCBI chr  X:73,070,198...73,129,296
Ensembl chr  X:73,070,198...73,129,296
JBrowse link
G Trim46 tripartite motif-containing 46 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 3:89,141,476...89,153,655
Ensembl chr 3:89,141,484...89,153,616
JBrowse link
positive regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Borcs5 BLOC-1 related complex subunit 5 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 6:134,616,475...134,688,147
Ensembl chr 6:134,616,473...134,688,150
JBrowse link
G Map2 microtubule-associated protein 2 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 1:66,214,337...66,481,742
Ensembl chr 1:66,214,432...66,481,742
JBrowse link
positive regulation of retrograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mecp2 methyl CpG binding protein 2 involved_in ISO RGD
MGI
PMID:22127389 GO_REF:0000096 MGI:4417868 RGD:12790715 NCBI chr  X:73,070,198...73,129,296
Ensembl chr  X:73,070,198...73,129,296
JBrowse link
positive regulation of vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stk11 serine/threonine kinase 11 involved_in IMP
IBA
ISO
(MGI:5604606|PMID:24643070) UniProt
GO_Central
MGI
PMID:24643070 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 MGI:4417868 MGI:4834177 MGI:5604606 NCBI chr10:79,951,602...79,966,513
Ensembl chr10:79,951,637...79,966,516
JBrowse link
retrograde neuronal dense core vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif1a kinesin family member 1A involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 1:92,943,180...93,029,760
Ensembl chr 1:92,943,186...93,029,673
JBrowse link
G Kif1b kinesin family member 1B involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 4:149,260,776...149,392,762
Ensembl chr 4:149,260,776...149,392,150
JBrowse link
G Kif1c kinesin family member 1C involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr11:70,591,170...70,622,796
Ensembl chr11:70,591,374...70,622,790
JBrowse link
G Kif5a kinesin family member 5A involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr10:127,061,564...127,102,217
Ensembl chr10:127,061,565...127,099,217
JBrowse link
G Kif5b kinesin family member 5B involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr18:6,201,005...6,241,524
Ensembl chr18:6,201,002...6,242,174
JBrowse link
vesicle transport along actin filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn4 actinin alpha 4 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:28,592,673...28,661,799
Ensembl chr 7:28,592,673...28,661,765
JBrowse link
G Fnbp1l formin binding protein 1-like involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 3:122,332,368...122,413,363
Ensembl chr 3:122,332,368...122,413,364
JBrowse link
G Myo19 myosin XIX involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:84,770,996...84,802,052
Ensembl chr11:84,770,974...84,802,052
JBrowse link
G Myo1c myosin IC acts_upstream_of_or_within IDA (PMID:12490950) MGI PMID:12490950 NCBI chr11:75,541,345...75,565,450
Ensembl chr11:75,541,330...75,564,736
JBrowse link
G Myo5a myosin VA acts_upstream_of_or_within
involved_in
ISO
TAS
IBA
(PMID:11706052) RGD
MGI
GO_Central
PMID:11470781 PMID:11706052 PMID:16190983 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 MGI:4417868 MGI:4834177 RGD:1600832 RGD:2306437 NCBI chr 9:74,975,183...75,130,970
Ensembl chr 9:74,978,297...75,130,970
JBrowse link
G Myo5b myosin VB involved_in IBA GO_Central GO_REF:0000033 NCBI chr18:74,575,435...74,905,769
Ensembl chr18:74,574,007...74,904,564
JBrowse link
G Myo5c myosin VC involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:75,139,252...75,212,733
Ensembl chr 9:75,139,302...75,212,733
JBrowse link
G Myrip myosin VIIA and Rab interacting protein acts_upstream_of_or_within TAS (PMID:11964381) MGI PMID:11964381 NCBI chr 9:120,132,996...120,305,167
Ensembl chr 9:120,130,579...120,303,907
JBrowse link
G Wasl WASP like actin nucleation promoting factor involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 6:24,613,809...24,665,185
Ensembl chr 6:24,613,804...24,665,008
JBrowse link
vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bicdl1 BICD family like cargo adaptor 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:115,786,233...115,869,824
Ensembl chr 5:115,786,234...115,869,680
JBrowse link
G Bicdl2 BICD family like cargo adaptor 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr17:23,863,663...23,887,595
Ensembl chr17:23,879,480...23,887,595
JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:126,170,571...126,184,991
Ensembl chr 7:126,170,379...126,184,989
JBrowse link
G Dync1i1 dynein cytoplasmic 1 intermediate chain 1 involved_in ISO MGI GO_REF:0000096 GO_REF:0000119 MGI:4417868 MGI:4834177 NCBI chr 6:5,725,772...6,028,030
Ensembl chr 6:5,725,639...6,028,039
JBrowse link
G Fbxw11 F-box and WD-40 domain protein 11 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:32,592,595...32,696,816
Ensembl chr11:32,592,724...32,696,816
JBrowse link
G Hap1 huntingtin-associated protein 1 acts_upstream_of_or_within
involved_in
IMP
IBA
(PMID:15242649) MGI
GO_Central
PMID:15242649 GO_REF:0000033 NCBI chr11:100,238,153...100,247,808
Ensembl chr11:100,238,153...100,246,954
JBrowse link
G Htt huntingtin involved_in
acts_upstream_of_or_within
ISO
IDA
(PMID:15242649) MGI PMID:15242649 GO_REF:0000119 MGI:4834177 NCBI chr 5:34,919,084...35,069,878
Ensembl chr 5:34,919,084...35,069,878
JBrowse link
G Kif5b kinesin family member 5B involved_in
acts_upstream_of_or_within
ISO
IGI
(PMID:17360972) MGI PMID:17360972 GO_REF:0000096 GO_REF:0000119 MGI:4417868 MGI:4834177 NCBI chr18:6,201,005...6,241,524
Ensembl chr18:6,201,002...6,242,174
JBrowse link
G Kifc1 kinesin family member C1 acts_upstream_of_or_within IGI (PMID:17360972) MGI PMID:17360972 NCBI chr17:34,094,640...34,109,607
Ensembl chr17:34,094,633...34,109,635
JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 involved_in ISO positive regulation of bidirectional melanosome transport along microtubules RGD
MGI
PMID:15753041 GO_REF:0000096 MGI:4417868 RGD:2293208 NCBI chr 9:64,093,066...64,160,887
Ensembl chr 9:64,093,052...64,160,913
JBrowse link
G Nde1 nudE neurodevelopment protein 1 acts_upstream_of_or_within
involved_in
IGI
IBA
(PMID:16107726) MGI
GO_Central
PMID:16107726 GO_REF:0000033 NCBI chr16:13,981,139...14,010,792
Ensembl chr16:13,981,139...14,010,792
JBrowse link
G Ndel1 nudE neurodevelopment protein 1 like 1 involved_in
acts_upstream_of_or_within
IBA
IGI
(PMID:16107726) GO_Central
MGI
PMID:16107726 GO_REF:0000033 NCBI chr11:68,712,260...68,743,961
Ensembl chr11:68,712,260...68,762,684
JBrowse link
G Pafah1b1 platelet-activating factor acetylhydrolase, isoform 1b, subunit 1 acts_upstream_of_or_within
involved_in
IGI
IBA
(PMID:16107726) MGI
GO_Central
PMID:16107726 GO_REF:0000033 NCBI chr11:74,564,775...74,615,210
Ensembl chr11:74,564,775...74,615,496
JBrowse link
G Prkcz protein kinase C, zeta involved_in ISO Slc10a1/Ntcp-containing early endosomes RGD
MGI
PMID:16734659 GO_REF:0000096 MGI:4417868 RGD:1642664 NCBI chr 4:155,344,579...155,445,856
Ensembl chr 4:155,344,586...155,445,818
JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO MGI GO_REF:0000096 GO_REF:0000119 MGI:4417868 MGI:4834177 NCBI chr11:20,151,412...20,176,856
Ensembl chr11:20,151,432...20,176,856
JBrowse link
G Rasgrp1 RAS guanyl releasing protein 1 acts_upstream_of_or_within IMP (PMID:17190838) MGI PMID:17190838 NCBI chr 2:117,110,464...117,173,358
Ensembl chr 2:117,110,474...117,173,482
JBrowse link
G Trak1 trafficking protein, kinesin binding 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 9:121,126,568...121,303,985
Ensembl chr 9:121,126,568...121,303,984
JBrowse link
G Trak2 trafficking protein, kinesin binding 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:58,939,608...59,013,509
Ensembl chr 1:58,939,608...59,012,589
JBrowse link
G Vamp7 vesicle-associated membrane protein 7 involved_in ISO MGI GO_REF:0000096 MGI:4417868

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28573
    localization 5534
      establishment of localization 4833
        establishment of organelle localization 512
          establishment of vesicle localization 202
            vesicle cytoskeletal trafficking 62
              dense core granule cytoskeletal transport + 12
              synaptic vesicle cytoskeletal transport + 21
              vesicle transport along actin filament + 9
              vesicle transport along microtubule + 48
Path 2
Term Annotations click to browse term
  biological_process 28573
    localization 5534
      establishment of localization 4833
        transport 4515
          intracellular transport 1381
            cytoskeleton-dependent intracellular transport 213
              vesicle cytoskeletal trafficking 62
                dense core granule cytoskeletal transport + 12
                synaptic vesicle cytoskeletal transport + 21
                vesicle transport along actin filament + 9
                vesicle transport along microtubule + 48
paths to the root