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ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle cytoskeletal trafficking
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Accession:GO:0099518 term browser browse the term
Definition:The directed movement of a vesicle along a cytoskeletal fiber such as a microtubule or and actin filament, mediated by motor proteins.
Synonyms:exact_synonym: cytoskeletal fiber-based vesicle localization;   vesicle cytoskeletal transport


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vesicle cytoskeletal trafficking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC186 coiled-coil domain containing 186 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:6102228|PMID:27293546) MGI
TreeGrafter
PMID:27293546 GO_REF:0000118 MGI:6102228 NCBI chr 9:106,995,610...107,048,884
Ensembl chr 9:106,998,396...107,048,533
JBrowse link
G F8A1 coagulation factor VIII associated 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:129,131,267...129,133,575 JBrowse link
anterograde neuronal dense core vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIF1A kinesin family member 1A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr10:126,784,843...126,890,649
Ensembl chr10:126,781,589...126,867,219
JBrowse link
G KIF1B kinesin family member 1B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr20:121,393,478...121,567,704
Ensembl chr20:121,395,836...121,546,803
JBrowse link
G KIF1C kinesin family member 1C involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr16:4,478,315...4,502,261 JBrowse link
G SYBU syntabulin ISO RGD PMID:17611281 RGD:13217407 NCBI chr 8:104,274,092...104,390,051
Ensembl chr 8:104,273,217...104,344,348
JBrowse link
anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP3B1 adaptor related protein complex 3 subunit beta 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 4:72,225,658...72,524,971
Ensembl chr 4:72,225,599...72,524,933
JBrowse link
G AP3B2 adaptor related protein complex 3 subunit beta 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr29:2,943,836...2,994,655
Ensembl chr29:2,943,919...2,994,700
JBrowse link
G AP3D1 adaptor related protein complex 3 subunit delta 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 6:1,901,669...1,951,352
Ensembl chr 6:1,901,507...1,951,314
JBrowse link
G AP3M1 adaptor related protein complex 3 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:57,222,363...57,251,593
Ensembl chr 9:57,230,801...57,251,616
JBrowse link
G AP3M2 adaptor related protein complex 3 subunit mu 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:40,142,577...40,161,013
Ensembl chr 8:40,142,666...40,161,008
JBrowse link
G AP3S1 adaptor related protein complex 3 subunit sigma 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:19,087,684...19,158,201
Ensembl chr23:19,087,698...19,150,979
JBrowse link
G BLOC1S1 biogenesis of lysosomal organelles complex 1 subunit 1 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr11:51,663,562...51,667,363 JBrowse link
G BLOC1S2 biogenesis of lysosomal organelles complex 1 subunit 2 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr 9:93,308,733...93,318,188
Ensembl chr 9:93,308,003...93,318,148
JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr 6:38,623,639...38,642,217
Ensembl chr 6:38,639,659...38,640,261
JBrowse link
G BLOC1S4 biogenesis of lysosomal organelles complex 1 subunit 4 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr27:42,836,231...42,837,514
Ensembl chr27:42,836,366...42,837,016
JBrowse link
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:64,095,766...64,149,918
Ensembl chr17:64,095,826...64,147,537
JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr26:37,605,891...37,622,302
Ensembl chr26:37,604,412...37,622,083
JBrowse link
G DTNBP1 dystrobrevin binding protein 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr17:56,500,523...56,650,925
Ensembl chr17:56,500,574...56,651,491
JBrowse link
G KIF1A kinesin family member 1A involved_in ISO (MGI:85527|PMID:7539720) SynGO PMID:7539720 MGI:85527 NCBI chr10:126,784,843...126,890,649
Ensembl chr10:126,781,589...126,867,219
JBrowse link
G MADD MAP kinase activating death domain involved_in ISO (MGI:6189386|PMID:18849981) SynGO PMID:18849981 MGI:6189386 NCBI chr 1:17,987,573...18,041,317
Ensembl chr 1:17,986,860...18,042,266
JBrowse link
G SNAPIN SNAP associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:10,147,577...10,150,721
Ensembl chr20:10,148,099...10,150,641
JBrowse link
G TRIM46 tripartite motif containing 46 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5708763|PMID:26671463) MGI
TreeGrafter
Ensembl
PMID:26671463 GO_REF:0000107 GO_REF:0000118 MGI:5708763 NCBI chr20:8,647,598...8,659,674
Ensembl chr20:8,648,373...8,658,600
JBrowse link
dense core granule cytoskeletal transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIF1A kinesin family member 1A involved_in ISO PMID:30021165
PMID:29166604
UniProt PMID:29166604 PMID:30021165 RGD:14995321 RGD:15023486 NCBI chr10:126,784,843...126,890,649
Ensembl chr10:126,781,589...126,867,219
JBrowse link
G PPFIA2 PTPRF interacting protein alpha 2 involved_in ISO (PMID:30021165) UniProt PMID:30021165 NCBI chr11:76,740,204...77,237,990
Ensembl chr11:76,736,719...77,079,140
JBrowse link
G SYT4 synaptotagmin 4 involved_in ISO PMID:29166604
(MGI:6104122|PMID:29166604)
UniProt PMID:29166604 MGI:6104122 RGD:15023486 NCBI chr18:37,595,187...37,604,931
Ensembl chr18:37,595,035...37,606,007
JBrowse link
G TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 involved_in ISO PMID:30021165 UniProt PMID:30021165 RGD:14995321 NCBI chr16:57,849,592...58,254,957
Ensembl chr16:57,855,282...58,306,571
JBrowse link
negative regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNIH2 cornichon family AMPA receptor auxiliary protein 2 involved_in ISO PMID:24094107 UniProt PMID:24094107 RGD:10400859 NCBI chr 1:7,982,685...7,988,834
Ensembl chr 1:7,982,700...7,988,753
JBrowse link
plus-end-directed vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FYCO1 FYVE and coiled-coil domain autophagy adaptor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:7,388,796...7,466,463
Ensembl chr22:7,388,704...7,466,430
JBrowse link
G KIF13A kinesin family member 13A involved_in ISO (MGI:5142383|PMID:11106728) UniProt PMID:11106728 MGI:5142383 NCBI chr17:54,156,948...54,389,141
Ensembl chr17:54,156,969...54,390,502
JBrowse link
G KIF5B kinesin family member 5B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3763812|PMID:17360972) MGI
Ensembl
PMID:17360972 GO_REF:0000107 MGI:3763812 NCBI chr 9:31,321,615...31,369,549
Ensembl chr 9:31,320,549...31,369,519
JBrowse link
positive regulation of anterograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAP2 microtubule associated protein 2 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr10:95,319,649...95,431,106
Ensembl chr10:95,349,157...95,431,320
JBrowse link
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chr  X:128,445,028...128,519,892
Ensembl chr  X:128,453,577...128,455,785
JBrowse link
G TRIM46 tripartite motif containing 46 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr20:8,647,598...8,659,674
Ensembl chr20:8,648,373...8,658,600
JBrowse link
positive regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BORCS5 BLOC-1 related complex subunit 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:12,259,080...12,363,576
Ensembl chr11:12,259,495...12,364,740
JBrowse link
G MAP2 microtubule associated protein 2 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr10:95,319,649...95,431,106
Ensembl chr10:95,349,157...95,431,320
JBrowse link
positive regulation of retrograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chr  X:128,445,028...128,519,892
Ensembl chr  X:128,453,577...128,455,785
JBrowse link
positive regulation of vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STK11 serine/threonine kinase 11 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 6:973,033...996,857
Ensembl chr 6:974,144...995,136
JBrowse link
retrograde neuronal dense core vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIF1A kinesin family member 1A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr10:126,784,843...126,890,649
Ensembl chr10:126,781,589...126,867,219
JBrowse link
G KIF1B kinesin family member 1B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr20:121,393,478...121,567,704
Ensembl chr20:121,395,836...121,546,803
JBrowse link
G KIF1C kinesin family member 1C involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr16:4,478,315...4,502,261 JBrowse link
G KIF5A kinesin family member 5A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr11:53,458,795...53,493,801 JBrowse link
G KIF5B kinesin family member 5B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 9:31,321,615...31,369,549
Ensembl chr 9:31,320,549...31,369,519
JBrowse link
vesicle transport along actin filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTN4 actinin alpha 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:33,290,639...33,373,059
Ensembl chr 6:33,290,622...33,374,693
JBrowse link
G FNBP1L formin binding protein 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:39,686,836...39,788,948
Ensembl chr20:39,686,742...39,788,893
JBrowse link
G MYO19 myosin XIX involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:31,270,855...31,313,273
Ensembl chr16:31,271,586...31,312,621
JBrowse link
G MYO1A myosin IA involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:52,939,744...52,961,957
Ensembl chr11:52,936,090...52,961,486
JBrowse link
G MYO1B myosin IB involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:76,773,372...76,951,006
Ensembl chr10:76,773,042...76,951,235
JBrowse link
G MYO1C myosin IC acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2447241|PMID:12490950) MGI
TreeGrafter
PMID:12490950 GO_REF:0000118 MGI:2447241 NCBI chr16:1,137,469...1,167,497 JBrowse link
G MYO1D myosin ID involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:26,050,272...26,425,568
Ensembl chr16:26,049,861...26,425,455
JBrowse link
G MYO1E myosin IE involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:24,138,462...24,378,602
Ensembl chr26:24,138,829...24,379,143
JBrowse link
G MYO1G myosin IG involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:13,710,572...13,727,055
Ensembl chr21:13,710,541...13,727,515
JBrowse link
G MYO1H myosin IH involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:104,575,208...104,683,418
Ensembl chr11:104,629,619...104,683,000
JBrowse link
G MYO5A myosin VA involved_in ISO (PMID:24006491) UniProt
RGD
PMID:11470781 PMID:16190983 PMID:24006491 RGD:1600832 RGD:2306437 NCBI chr26:30,865,947...31,085,184 JBrowse link
G MYO5A myosin VA involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 Ensembl chr26:30,867,704...31,045,978 JBrowse link
G MYO5B myosin VB involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr18:30,759,345...31,143,139
Ensembl chr18:30,759,764...31,143,474
JBrowse link
G MYO5C myosin VC involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:31,095,461...31,196,514
Ensembl chr26:31,107,036...31,196,049
JBrowse link
G MYO6 myosin VI involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:527,361...620,418
Ensembl chr13:457,495...618,858
JBrowse link
G WASL WASP like actin nucleation promoting factor involved_in ISO PMID:20730103 BHF-UCL PMID:20730103 RGD:8554834 NCBI chr21:92,480,392...92,546,725
Ensembl chr21:92,482,918...92,546,481
JBrowse link
vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BICDL1 BICD family like cargo adaptor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:115,339,209...115,446,889
Ensembl chr11:115,339,334...115,443,059
JBrowse link
G BICDL2 BICD family like cargo adaptor 2 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr 5:2,771,396...2,774,412 JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:22261744) UniProt PMID:22261744 NCBI chr 5:26,320,132...26,343,009
Ensembl chr 5:26,320,061...26,337,402
JBrowse link
G DYNC1I1 dynein cytoplasmic 1 intermediate chain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:52,950,983...53,271,113
Ensembl chr21:52,950,874...53,271,130
JBrowse link
G HAP1 huntingtin associated protein 1 acts_upstream_of_or_within ISO (MGI:3046393|PMID:15242649) MGI PMID:15242649 MGI:3046393 NCBI chr16:64,515,013...64,524,270 JBrowse link
G HTT huntingtin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3046393|PMID:15242649) MGI
Ensembl
PMID:15242649 GO_REF:0000107 MGI:3046393 NCBI chr27:45,493,467...45,657,690
Ensembl chr27:45,497,352...45,657,621
JBrowse link
G KIF5B kinesin family member 5B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3763812|PMID:17360972) MGI
Ensembl
PMID:17360972 GO_REF:0000107 MGI:3763812 NCBI chr 9:31,321,615...31,369,549
Ensembl chr 9:31,320,549...31,369,519
JBrowse link
G MAP2K1 mitogen-activated protein kinase kinase 1 ISO positive regulation of bidirectional melanosome transport along microtubules RGD PMID:15753041 RGD:2293208 NCBI chr26:17,059,122...17,168,787
Ensembl chr26:17,060,054...17,168,782
JBrowse link
G NDE1 nudE neurodevelopment protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3588829|PMID:16107726) Ensembl
TreeGrafter
MGI
PMID:16107726 GO_REF:0000107 GO_REF:0000118 MGI:3588829 NCBI chr 5:14,670,559...14,720,025
Ensembl chr 5:14,684,215...14,722,192
JBrowse link
G NDEL1 nudE neurodevelopment protein 1 like 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3588829|PMID:16107726) MGI
TreeGrafter
Ensembl
PMID:16107726 GO_REF:0000107 GO_REF:0000118 MGI:3588829 NCBI chr16:7,797,858...7,831,211 JBrowse link
G PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3588829|PMID:16107726) Ensembl
TreeGrafter
MGI
PMID:16107726 GO_REF:0000107 GO_REF:0000118 MGI:3588829 NCBI chr16:2,270,126...2,293,705
Ensembl chr16:2,270,085...2,296,825
JBrowse link
G PRKCZ protein kinase C zeta ISO Slc10a1/Ntcp-containing early endosomes RGD PMID:16734659 RGD:1642664 NCBI chr20:129,367,309...129,502,681
Ensembl chr20:129,365,679...129,485,818
JBrowse link
G RAB1A RAB1A, member RAS oncogene family involved_in ISO (PMID:21303926) UniProt PMID:21303926 RGD:8554665 NCBI chr14:41,890,055...41,932,180 JBrowse link
G RASGRP1 RAS guanyl releasing protein 1 acts_upstream_of_or_within ISO (MGI:3758152|PMID:17190838) MGI PMID:17190838 MGI:3758152 NCBI chr26:44,405,007...44,483,291 JBrowse link
G TRAK1 trafficking kinesin protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:3,536,589...3,668,622
Ensembl chr22:3,446,484...3,668,347
JBrowse link
G TRAK2 trafficking kinesin protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:87,022,038...87,096,685
Ensembl chr10:87,022,043...87,096,666
JBrowse link
G VAMP7 vesicle associated membrane protein 7 involved_in ISO PMID:22705394 UniProt PMID:22705394 RGD:10047362 NCBI chr  X:129,937,026...129,984,071
Ensembl chr  X:129,937,046...129,984,119
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16771
    localization 5329
      establishment of localization 4609
        establishment of organelle localization 475
          establishment of vesicle localization 181
            vesicle cytoskeletal trafficking 66
              dense core granule cytoskeletal transport + 12
              synaptic vesicle cytoskeletal transport + 20
              vesicle transport along actin filament + 16
              vesicle transport along microtubule + 45
Path 2
Term Annotations click to browse term
  biological_process 16771
    localization 5329
      establishment of localization 4609
        transport 4298
          intracellular transport 1335
            cytoskeleton-dependent intracellular transport 200
              vesicle cytoskeletal trafficking 66
                dense core granule cytoskeletal transport + 12
                synaptic vesicle cytoskeletal transport + 20
                vesicle transport along actin filament + 16
                vesicle transport along microtubule + 45
paths to the root