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ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle cytoskeletal trafficking
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Accession:GO:0099518 term browser browse the term
Definition:The directed movement of a vesicle along a cytoskeletal fiber such as a microtubule or and actin filament, mediated by motor proteins.
Synonyms:exact_synonym: cytoskeletal fiber-based vesicle localization;   vesicle cytoskeletal transport



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vesicle cytoskeletal trafficking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC186 coiled-coil domain containing 186 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:27293546) Ensembl
MGI
TreeGrafter
PMID:27293546 GO_REF:0000107 GO_REF:0000118 NCBI chr28:24,963,035...25,022,996
Ensembl chr28:24,976,959...25,011,955
JBrowse link
anterograde neuronal dense core vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIF1A kinesin family member 1A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr25:50,855,703...50,945,014
Ensembl chr25:50,858,698...50,944,964
JBrowse link
G KIF1B kinesin family member 1B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 5:63,367,294...63,516,388
Ensembl chr 5:63,376,820...63,513,476
JBrowse link
G KIF1C kinesin family member 1C involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 5:31,613,335...31,635,313
Ensembl chr 5:31,613,398...31,633,736
JBrowse link
G SYBU syntabulin ISO RGD PMID:17611281 RGD:13217407 NCBI chr13:10,110,183...10,179,514
Ensembl chr13:10,111,091...10,180,056
JBrowse link
anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP3B1 adaptor related protein complex 3 subunit beta 1 involved_in ISS
IBA
IEA
UniProt
GO_Central
TreeGrafter
Ensembl
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:28,481,974...28,748,095
Ensembl chr 3:28,481,038...28,751,258
JBrowse link
G AP3B2 adaptor related protein complex 3 subunit beta 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:54,509,753...54,539,520
Ensembl chr 3:54,508,627...54,539,505
JBrowse link
G AP3D1 adaptor related protein complex 3 subunit delta 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr20:56,893,479...56,932,460
Ensembl chr20:56,893,535...56,931,830
JBrowse link
G AP3M1 adaptor related protein complex 3 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:24,521,655...24,540,232
Ensembl chr 4:24,516,758...24,540,232
JBrowse link
G AP3M2 adaptor related protein complex 3 subunit mu 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:23,500,988...23,518,193
Ensembl chr16:23,454,325...23,518,193
JBrowse link
G AP3S1 adaptor related protein complex 3 subunit sigma 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:5,543,140...5,611,322
Ensembl chr11:5,543,222...5,610,930
JBrowse link
G AP3S2 adaptor related protein complex 3 subunit sigma 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:52,807,462...52,865,290
Ensembl chr 3:52,807,462...52,865,245
JBrowse link
G BLOC1S1 biogenesis of lysosomal organelles complex 1 subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:116,993...120,244 JBrowse link
G BLOC1S2 biogenesis of lysosomal organelles complex 1 subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:13,040,016...13,044,364
Ensembl chr28:13,040,573...13,044,323
JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:110,325,351...110,328,226
Ensembl chr 1:110,326,843...110,327,442
JBrowse link
G BLOC1S4 biogenesis of lysosomal organelles complex 1 subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:58,822,405...58,823,770
Ensembl chr 3:58,822,482...58,823,138
JBrowse link
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr35:7,860,336...7,998,461
Ensembl chr35:7,955,923...7,998,505
JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr30:11,861,119...11,949,451
Ensembl chr30:11,811,339...11,937,353
JBrowse link
G DTNBP1 dystrobrevin binding protein 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr35:14,738,025...14,862,609
Ensembl chr35:14,738,029...14,864,169
JBrowse link
G KIF1A kinesin family member 1A involved_in ISO (PMID:7539720) SynGO PMID:7539720 NCBI chr25:50,855,703...50,945,014
Ensembl chr25:50,858,698...50,944,964
JBrowse link
G MADD MAP kinase activating death domain involved_in ISO (PMID:18849981) SynGO PMID:18849981 NCBI chr18:42,290,226...42,332,237
Ensembl chr18:42,290,754...42,328,586
JBrowse link
G SNAPIN SNAP associated protein involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr 7:43,410,554...43,411,929
Ensembl chr 7:43,410,998...43,412,323
JBrowse link
G TRIM46 tripartite motif containing 46 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:26671463) Ensembl
MGI
TreeGrafter
PMID:26671463 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:42,345,506...42,354,667
Ensembl chr 7:42,345,523...42,354,557
JBrowse link
G TRIM55 tripartite motif containing 55 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr29:15,786,423...15,831,059
Ensembl chr29:15,786,433...15,830,402
JBrowse link
dense core granule cytoskeletal transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIF1A kinesin family member 1A involved_in ISO PMID:30021165
PMID:29166604
UniProt PMID:29166604 PMID:30021165 RGD:14995321 RGD:15023486 NCBI chr25:50,855,703...50,945,014
Ensembl chr25:50,858,698...50,944,964
JBrowse link
G PPFIA2 PTPRF interacting protein alpha 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:23,481,370...23,950,412
Ensembl chr15:23,482,549...23,951,141
JBrowse link
G SYT4 synaptotagmin 4 involved_in ISO PMID:29166604
(MGI:6104122|PMID:29166604)
UniProt PMID:29166604 MGI:6104122 RGD:15023486 NCBI chr 7:47,555,110...47,565,313
Ensembl chr 7:47,509,852...47,563,714
JBrowse link
G TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 involved_in ISO PMID:30021165 UniProt PMID:30021165 RGD:14995321 NCBI chr 9:11,133,634...11,459,738
Ensembl chr 9:11,151,475...11,454,022
JBrowse link
negative regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNIH2 cornichon family AMPA receptor auxiliary protein 2 involved_in ISO PMID:24094107 UniProt PMID:24094107 RGD:10400859 NCBI chr18:51,020,263...51,026,280
Ensembl chr18:51,021,116...51,026,273
JBrowse link
plus-end-directed vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FYCO1 FYVE and coiled-coil domain autophagy adaptor 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr20:42,520,241...42,593,886
Ensembl chr20:42,525,435...42,590,243
JBrowse link
G KIF13A kinesin family member 13A involved_in ISO (MGI:5142383|PMID:11106728) UniProt PMID:11106728 MGI:5142383 NCBI chr35:16,621,581...16,748,500
Ensembl chr35:16,598,425...16,748,485
JBrowse link
G KIF5B kinesin family member 5B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17360972) Ensembl
MGI
PMID:17360972 GO_REF:0000107 NCBI chr 2:14,835,906...14,880,896
Ensembl chr 2:14,835,901...14,878,251
JBrowse link
positive regulation of anterograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAP2 microtubule associated protein 2 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr37:17,316,899...17,611,360
Ensembl chr37:17,466,678...17,607,803
JBrowse link
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994
JBrowse link
G TRIM46 tripartite motif containing 46 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 7:42,345,506...42,354,667
Ensembl chr 7:42,345,523...42,354,557
JBrowse link
positive regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BORCS5 BLOC-1 related complex subunit 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr27:33,839,345...33,949,056
Ensembl chr27:33,837,318...33,934,896
JBrowse link
G MAP2 microtubule associated protein 2 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr37:17,316,899...17,611,360
Ensembl chr37:17,466,678...17,607,803
JBrowse link
positive regulation of retrograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994
JBrowse link
positive regulation of vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STK11 serine/threonine kinase 11 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr20:57,558,966...57,579,163
Ensembl chr20:57,559,424...57,579,118
JBrowse link
retrograde neuronal dense core vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIF1A kinesin family member 1A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr25:50,855,703...50,945,014
Ensembl chr25:50,858,698...50,944,964
JBrowse link
G KIF1B kinesin family member 1B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 5:63,367,294...63,516,388
Ensembl chr 5:63,376,820...63,513,476
JBrowse link
G KIF1C kinesin family member 1C involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 5:31,613,335...31,635,313
Ensembl chr 5:31,613,398...31,633,736
JBrowse link
G KIF5A kinesin family member 5A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr10:1,637,007...1,666,790
Ensembl chr10:1,636,932...1,664,767
JBrowse link
G KIF5B kinesin family member 5B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 2:14,835,906...14,880,896
Ensembl chr 2:14,835,901...14,878,251
JBrowse link
vesicle transport along actin filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTN4 actinin alpha 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:114,354,993...114,427,997
Ensembl chr 1:114,309,693...114,427,991
JBrowse link
G ARPP19 cAMP regulated phosphoprotein 19 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr30:18,190,358...18,213,054 JBrowse link
G FNBP1L formin binding protein 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:55,533,270...55,642,622
Ensembl chr 6:55,534,751...55,642,463
JBrowse link
G LGALS7B galectin 7B involved_in IEA Ensembl GO_REF:0000107
G MYH2 myosin heavy chain 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:34,810,791...34,838,177
Ensembl chr 5:34,810,921...34,837,904
JBrowse link
G MYO19 myosin XIX involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:36,383,777...36,429,730
Ensembl chr 9:36,349,191...36,428,091
JBrowse link
G MYO1A myosin IA involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:1,159,816...1,194,452
Ensembl chr10:1,159,812...1,193,153
JBrowse link
G MYO1B myosin IB involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr37:1,748,287...1,921,360
Ensembl chr37:1,747,974...1,920,349
JBrowse link
G MYO1C myosin IC involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12490950) Ensembl
MGI
TreeGrafter
PMID:12490950 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:45,635,295...45,658,226
Ensembl chr 9:45,636,208...45,658,035
JBrowse link
G MYO1D myosin ID involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:40,171,426...40,497,556
Ensembl chr 9:40,171,158...40,496,210
JBrowse link
G MYO1E myosin IE involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr30:24,067,622...24,265,567
Ensembl chr30:24,068,283...24,265,311
JBrowse link
G MYO1F myosin IF involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:53,054,583...53,088,593
Ensembl chr20:53,054,585...53,089,115
JBrowse link
G MYO1G myosin IG involved_in IEA TreeGrafter GO_REF:0000118
G MYO1H myosin IH involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:17,626,161...17,669,772
Ensembl chr26:17,626,121...17,729,757
JBrowse link
G MYO5A myosin VA involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
PMID:11470781 PMID:16190983 GO_REF:0000107 GO_REF:0000118 RGD:1600832 RGD:2306437 NCBI chr30:17,990,521...18,122,160
Ensembl chr30:17,888,419...18,213,061
JBrowse link
G MYO5B myosin VB involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:78,671,636...79,006,010
Ensembl chr 7:78,671,616...79,006,006
JBrowse link
G MYO5C myosin VC involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr30:17,888,422...17,972,365
Ensembl chr30:17,888,419...18,213,061
JBrowse link
G MYO6 myosin VI involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:37,359,200...37,502,342
Ensembl chr12:37,413,570...37,500,724
JBrowse link
G TAC3 tachykinin precursor 3 involved_in IEA TreeGrafter GO_REF:0000118
G WASL WASP like actin nucleation promoting factor involved_in ISO PMID:20730103 BHF-UCL PMID:20730103 RGD:8554834 NCBI chr14:11,828,298...11,901,190
Ensembl chr14:11,828,687...11,899,788
JBrowse link
vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BICDL1 BICD family like cargo adaptor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:15,959,077...16,060,492
Ensembl chr26:15,959,071...16,059,226
JBrowse link
G BICDL2 BICD family like cargo adaptor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:38,151,942...38,161,462
Ensembl chr 6:38,152,952...38,161,428
JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 6:18,252,543...18,266,033
Ensembl chr 6:18,254,139...18,266,033
JBrowse link
G DYNC1I1 dynein cytoplasmic 1 intermediate chain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:20,967,936...21,279,044
Ensembl chr14:20,968,011...21,278,363
JBrowse link
G HAP1 huntingtin associated protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15242649) Ensembl
MGI
TreeGrafter
PMID:15242649 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:21,065,770...21,074,462
Ensembl chr 9:21,065,846...21,072,991
JBrowse link
G HTT huntingtin involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15242649) Ensembl
MGI
PMID:15242649 GO_REF:0000107 NCBI chr 3:61,076,934...61,221,462
Ensembl chr 3:61,079,904...61,330,290
JBrowse link
G KIF5B kinesin family member 5B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17360972) Ensembl
MGI
PMID:17360972 GO_REF:0000107 NCBI chr 2:14,835,906...14,880,896
Ensembl chr 2:14,835,901...14,878,251
JBrowse link
G MAP2K1 mitogen-activated protein kinase kinase 1 ISO positive regulation of bidirectional melanosome transport along microtubules RGD PMID:15753041 RGD:2293208 NCBI chr30:30,683,192...30,760,479
Ensembl chr30:30,683,107...30,760,479
JBrowse link
G NDE1 nudE neurodevelopment protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16107726) TreeGrafter
MGI
PMID:16107726 GO_REF:0000118 NCBI chr 6:28,143,244...28,186,069
Ensembl chr 6:28,143,244...28,186,051
JBrowse link
G NDEL1 nudE neurodevelopment protein 1 like 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16107726) Ensembl
MGI
TreeGrafter
PMID:16107726 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:33,187,614...33,244,483
Ensembl chr 5:33,204,452...33,266,052
JBrowse link
G PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16107726) Ensembl
MGI
TreeGrafter
PMID:16107726 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:46,648,057...46,731,259
Ensembl chr 9:46,648,052...46,771,400
JBrowse link
G PRKCZ protein kinase C zeta ISO Slc10a1/Ntcp-containing early endosomes RGD PMID:16734659 RGD:1642664 NCBI chr 5:57,012,020...57,113,346
Ensembl chr 5:57,012,070...57,112,664
JBrowse link
G RAB1A RAB1A, member RAS oncogene family involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr10:64,564,351...64,590,654
Ensembl chr10:64,564,298...64,590,705
JBrowse link
G RASGRP1 RAS guanyl releasing protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17190838) Ensembl
MGI
PMID:17190838 GO_REF:0000107 NCBI chr30:5,840,901...5,914,804
Ensembl chr30:5,841,738...5,914,810
JBrowse link
G TRAK1 trafficking kinesin protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:11,221,008...11,383,242
Ensembl chr23:11,266,216...11,381,177
JBrowse link
G TRAK2 trafficking kinesin protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr37:10,457,985...10,521,432
Ensembl chr37:10,461,104...10,497,820
JBrowse link
G VAMP7 vesicle associated membrane protein 7 involved_in ISO PMID:22705394 UniProt PMID:22705394 RGD:10047362 NCBI chr  X:123,717,524...123,783,781
Ensembl chr  X:123,717,446...123,783,014
JBrowse link
G WDR5B WD repeat domain 5B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr33:25,554,218...25,557,025
Ensembl chr33:25,555,419...25,556,408
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17878
    localization 5577
      establishment of localization 4868
        establishment of organelle localization 497
          establishment of vesicle localization 189
            vesicle cytoskeletal trafficking 72
              dense core granule cytoskeletal transport + 12
              synaptic vesicle cytoskeletal transport + 22
              vesicle transport along actin filament + 20
              vesicle transport along microtubule + 48
Path 2
Term Annotations click to browse term
  biological_process 17878
    localization 5577
      establishment of localization 4868
        transport 4542
          intracellular transport 1423
            cytoskeleton-dependent intracellular transport 217
              vesicle cytoskeletal trafficking 72
                dense core granule cytoskeletal transport + 12
                synaptic vesicle cytoskeletal transport + 22
                vesicle transport along actin filament + 20
                vesicle transport along microtubule + 48
paths to the root