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ONTOLOGY REPORT - ANNOTATIONS


Term:vesicle cytoskeletal trafficking
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Accession:GO:0099518 term browser browse the term
Definition:The directed movement of a vesicle along a cytoskeletal fiber such as a microtubule or and actin filament, mediated by motor proteins.
Synonyms:exact_synonym: cytoskeletal fiber-based vesicle localization;   vesicle cytoskeletal transport



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vesicle cytoskeletal trafficking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC186 coiled-coil domain containing 186 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:6102228|PMID:27293546) MGI
TreeGrafter
Ensembl
PMID:27293546 GO_REF:0000107 GO_REF:0000118 MGI:6102228 NCBI chr10:110,720,243...110,774,362
Ensembl chr10:114,156,401...114,194,141
JBrowse link
G F8A1 coagulation factor VIII associated 1 involved_in ISO PMID:16476778 UniProt PMID:16476778 RGD:14697710 NCBI chr  X:144,366,123...144,367,842 JBrowse link
anterograde neuronal dense core vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIF1A kinesin family member 1A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr2B:127,969,494...128,078,282
Ensembl chr2B:246,778,679...246,860,326
JBrowse link
G KIF1B kinesin family member 1B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 1:8,969,910...9,141,964
Ensembl chr 1:10,198,997...10,364,577
Ensembl chr 1:10,198,997...10,364,577
JBrowse link
G KIF1C kinesin family member 1C involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr17:5,046,488...5,073,220
Ensembl chr17:5,035,014...5,061,957
JBrowse link
G SYBU syntabulin ISO RGD PMID:17611281 RGD:13217407 NCBI chr 8:106,223,046...106,340,418
Ensembl chr 8:108,368,117...108,483,927
JBrowse link
anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP3B1 adaptor related protein complex 3 subunit beta 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 5:37,015,518...37,305,769
Ensembl chr 5:37,503,162...37,840,205
JBrowse link
G AP3B2 adaptor related protein complex 3 subunit beta 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:62,888,359...62,938,758
Ensembl chr15:80,557,967...80,607,475
JBrowse link
G AP3D1 adaptor related protein complex 3 subunit delta 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr19:1,110,419...1,161,826
Ensembl chr19:2,085,540...2,137,593
JBrowse link
G AP3M1 adaptor related protein complex 3 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:70,643,520...70,672,821
Ensembl chr10:73,312,906...73,342,382
JBrowse link
G AP3M2 adaptor related protein complex 3 subunit mu 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:41,397,123...41,415,379
Ensembl chr 8:38,842,811...38,861,030
JBrowse link
G AP3S1 adaptor related protein complex 3 subunit sigma 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:111,195,900...111,268,129
Ensembl chr 5:116,992,049...117,063,727
JBrowse link
G AP3S2 adaptor related protein complex 3 subunit sigma 2 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr15:68,524,982...68,583,917 JBrowse link
G BLOC1S1 biogenesis of lysosomal organelles complex 1 subunit 1 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr12:33,191,882...33,195,566
Ensembl chr12:33,911,309...33,920,506
JBrowse link
G BLOC1S2 biogenesis of lysosomal organelles complex 1 subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:96,878,280...96,887,830
Ensembl chr10:100,358,095...100,368,640
JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr19:42,100,227...42,128,636 JBrowse link
G BLOC1S4 biogenesis of lysosomal organelles complex 1 subunit 4 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 4:6,787,943...6,788,596 JBrowse link
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:7,852,340...7,902,880
Ensembl chr 6:8,133,721...8,184,194
JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:24,469,225...24,553,163
Ensembl chr15:42,862,112...42,882,316
JBrowse link
G DTNBP1 dystrobrevin binding protein 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 6:15,377,263...15,523,317
Ensembl chr 6:15,741,698...15,887,256
JBrowse link
G KIF1A kinesin family member 1A involved_in ISO (MGI:85527|PMID:7539720) SynGO PMID:7539720 MGI:85527 NCBI chr2B:127,969,494...128,078,282
Ensembl chr2B:246,778,679...246,860,326
JBrowse link
G MADD MAP kinase activating death domain involved_in ISO (MGI:6189386|PMID:18849981) SynGO PMID:18849981 MGI:6189386 NCBI chr11:47,216,006...47,276,422
Ensembl chr11:47,773,733...47,828,360
JBrowse link
G SNAPIN SNAP associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:129,014,668...129,018,428
Ensembl chr 1:132,644,320...132,647,095
JBrowse link
G TRIM46 tripartite motif containing 46 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:5708763|PMID:26671463) MGI
TreeGrafter
Ensembl
PMID:26671463 GO_REF:0000107 GO_REF:0000118 MGI:5708763 NCBI chr 1:130,521,472...130,532,636
Ensembl chr 1:134,129,984...134,142,362
JBrowse link
G TRIM54 tripartite motif containing 54 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2A:27,281,950...27,309,495
Ensembl chr2A:27,370,903...27,397,214
JBrowse link
dense core granule cytoskeletal transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIF1A kinesin family member 1A involved_in ISO PMID:30021165
PMID:29166604
UniProt PMID:29166604 PMID:30021165 RGD:14995321 RGD:15023486 NCBI chr2B:127,969,494...128,078,282
Ensembl chr2B:246,778,679...246,860,326
JBrowse link
G PPFIA2 PTPRF interacting protein alpha 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:78,768,756...79,271,630
Ensembl chr12:81,879,812...82,376,917
JBrowse link
G SYT4 synaptotagmin 4 involved_in ISO PMID:29166604
(MGI:6104122|PMID:29166604)
UniProt PMID:29166604 MGI:6104122 RGD:15023486 NCBI chr18:36,540,756...36,550,439
Ensembl chr18:40,089,938...40,099,721
JBrowse link
G TANC2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 involved_in ISO PMID:30021165 UniProt PMID:30021165 RGD:14995321 NCBI chr17:57,037,330...57,509,229
Ensembl chr17:62,239,230...62,650,299
JBrowse link
negative regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNIH2 cornichon family AMPA receptor auxiliary protein 2 involved_in ISO PMID:24094107 UniProt PMID:24094107 RGD:10400859 NCBI chr11:61,643,633...61,649,646
Ensembl chr11:64,969,447...64,975,156
JBrowse link
plus-end-directed vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FYCO1 FYVE and coiled-coil domain autophagy adaptor 1 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr 3:45,825,670...45,903,595
Ensembl chr 3:46,932,148...47,009,676
JBrowse link
G KIF13A kinesin family member 13A involved_in ISO (MGI:5142383|PMID:11106728) UniProt PMID:11106728 MGI:5142383 NCBI chr 6:17,593,535...17,836,915
Ensembl chr 6:17,966,994...18,190,286
JBrowse link
G KIF5B kinesin family member 5B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3763812|PMID:17360972) MGI
Ensembl
PMID:17360972 GO_REF:0000107 MGI:3763812 NCBI chr10:32,138,964...32,186,448
Ensembl chr10:32,731,150...32,778,242
JBrowse link
positive regulation of anterograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAP2 microtubule associated protein 2 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr2B:96,681,268...96,991,650
Ensembl chr2B:215,314,857...215,391,728
JBrowse link
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chr  X:143,571,864...143,647,192
Ensembl chr  X:153,465,204...153,527,854
JBrowse link
G TRIM46 tripartite motif containing 46 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 1:130,521,472...130,532,636
Ensembl chr 1:134,129,984...134,142,362
JBrowse link
positive regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BORCS5 BLOC-1 related complex subunit 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:12,380,071...12,488,735
Ensembl chr12:12,749,104...12,857,043
JBrowse link
G MAP2 microtubule associated protein 2 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr2B:96,681,268...96,991,650
Ensembl chr2B:215,314,857...215,391,728
JBrowse link
positive regulation of retrograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chr  X:143,571,864...143,647,192
Ensembl chr  X:153,465,204...153,527,854
JBrowse link
positive regulation of vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STK11 serine/threonine kinase 11 involved_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 Ensembl chr19:1,188,537...1,210,677 JBrowse link
retrograde neuronal dense core vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIF1A kinesin family member 1A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr2B:127,969,494...128,078,282
Ensembl chr2B:246,778,679...246,860,326
JBrowse link
G KIF1B kinesin family member 1B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 1:8,969,910...9,141,964
Ensembl chr 1:10,198,997...10,364,577
Ensembl chr 1:10,198,997...10,364,577
JBrowse link
G KIF1C kinesin family member 1C involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr17:5,046,488...5,073,220
Ensembl chr17:5,035,014...5,061,957
JBrowse link
G KIF5A kinesin family member 5A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr12:31,340,201...31,376,849
Ensembl chr12:31,599,376...31,635,327
JBrowse link
G KIF5B kinesin family member 5B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr10:32,138,964...32,186,448
Ensembl chr10:32,731,150...32,778,242
JBrowse link
vesicle transport along actin filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTN4 actinin alpha 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:35,742,758...35,825,321
Ensembl chr19:44,313,569...44,395,508
JBrowse link
G FNBP1L formin binding protein 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:96,117,160...96,223,362
Ensembl chr 1:94,848,050...94,953,820
JBrowse link
G MYO19 myosin XIX involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:20,546,652...20,586,131
Ensembl chr17:20,840,913...20,880,242
JBrowse link
G MYO1A myosin IA involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:31,875,570...31,899,279
Ensembl chr12:32,130,708...32,152,335
JBrowse link
G MYO1B myosin IB involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:78,549,494...78,728,819
Ensembl chr2B:196,465,078...196,644,188
JBrowse link
G MYO1C myosin IC acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2447241|PMID:12490950) MGI
TreeGrafter
Ensembl
PMID:12490950 GO_REF:0000107 GO_REF:0000118 MGI:2447241 NCBI chr17:1,446,506...1,475,634
Ensembl chr17:1,345,143...1,375,540
JBrowse link
G MYO1D myosin ID involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:23,900,814...24,283,721
Ensembl chr17:24,284,959...24,572,183
JBrowse link
G MYO1E myosin IE involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:38,106,599...38,343,040
Ensembl chr15:56,413,570...56,649,722
JBrowse link
G MYO1F myosin IF involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:7,807,863...7,858,955
Ensembl chr19:8,656,082...8,705,107
JBrowse link
G MYO1G myosin IG involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:45,676,225...45,693,013
Ensembl chr 7:45,740,036...45,759,819
JBrowse link
G MYO1H myosin IH involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:106,965,514...107,025,380
Ensembl chr12:110,359,936...110,419,574
JBrowse link
G MYO5A myosin VA involved_in ISO
IEA
RGD
TreeGrafter
Ensembl
PMID:11470781 PMID:16190983 GO_REF:0000107 GO_REF:0000118 RGD:1600832 RGD:2306437 NCBI chr15:31,246,192...31,470,040
Ensembl chr15:49,578,491...49,704,319
JBrowse link
G MYO5B myosin VB involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr18:43,207,387...43,575,951
Ensembl chr18:46,555,259...46,786,223
JBrowse link
G MYO5C myosin VC involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr15:31,133,566...31,235,074
Ensembl chr15:49,459,741...49,549,752
JBrowse link
G MYO6 myosin VI involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:73,593,794...73,764,352
Ensembl chr 6:76,951,634...77,048,796
JBrowse link
G WASL WASP like actin nucleation promoting factor involved_in ISO PMID:20730103 BHF-UCL PMID:20730103 RGD:8554834 NCBI chr 7:115,675,170...115,741,498
Ensembl chr 7:128,360,495...128,385,393
JBrowse link
vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BICDL1 BICD family like cargo adaptor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:117,566,086...117,670,093
Ensembl chr12:120,942,469...121,045,936
JBrowse link
G BICDL2 BICD family like cargo adaptor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:1,969,559...2,000,362
Ensembl chr16:3,141,805...3,169,873
JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:22261744) UniProt PMID:22261744
G DYNC1I1 dynein cytoplasmic 1 intermediate chain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:87,724,604...88,050,624
Ensembl chr 7:101,344,053...101,648,607
JBrowse link
G HAP1 huntingtin associated protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3046393|PMID:15242649) MGI
TreeGrafter
Ensembl
PMID:15242649 GO_REF:0000107 GO_REF:0000118 MGI:3046393 NCBI chr17:15,578,658...15,596,313
Ensembl chr17:15,797,949...15,810,299
JBrowse link
G HTT huntingtin acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3046393|PMID:15242649) MGI
Ensembl
PMID:15242649 GO_REF:0000107 MGI:3046393 NCBI chr 4:3,215,081...3,388,587
Ensembl chr 4:3,128,718...3,283,730
JBrowse link
G KIF5B kinesin family member 5B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3763812|PMID:17360972) MGI
Ensembl
PMID:17360972 GO_REF:0000107 MGI:3763812 NCBI chr10:32,138,964...32,186,448
Ensembl chr10:32,731,150...32,778,242
JBrowse link
G MAP2K1 mitogen-activated protein kinase kinase 1 ISO positive regulation of bidirectional melanosome transport along microtubules RGD PMID:15753041 RGD:2293208 NCBI chr15:45,337,117...45,438,826
Ensembl chr15:63,613,961...63,714,161
JBrowse link
G NDE1 nudE neurodevelopment protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3588829|PMID:16107726) Ensembl
TreeGrafter
MGI
PMID:16107726 GO_REF:0000107 GO_REF:0000118 MGI:3588829 Ensembl chr16:15,948,881...16,027,986 JBrowse link
G NDEL1 nudE neurodevelopment protein 1 like 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3588829|PMID:16107726) MGI
TreeGrafter
PMID:16107726 GO_REF:0000118 MGI:3588829 NCBI chr17:43,186,255...43,218,436
Ensembl chr17:47,918,827...47,950,749
JBrowse link
G PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3588829|PMID:16107726) Ensembl
TreeGrafter
MGI
PMID:16107726 GO_REF:0000107 GO_REF:0000118 MGI:3588829 NCBI chr17:2,584,349...2,676,928
Ensembl chr17:2,590,007...2,680,994
JBrowse link
G PRKCZ protein kinase C zeta ISO Slc10a1/Ntcp-containing early endosomes RGD PMID:16734659 RGD:1642664 NCBI chr 1:763,942...901,531
Ensembl chr 1:1,920,219...2,045,855
JBrowse link
G RAB1A RAB1A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:65,149,922...65,193,305
Ensembl chr2A:66,274,809...66,318,290
JBrowse link
G RAB1B RAB1B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:61,634,017...61,642,945
Ensembl chr11:64,959,957...64,968,843
JBrowse link
G RASGRP1 RAS guanyl releasing protein 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3758152|PMID:17190838) MGI
Ensembl
PMID:17190838 GO_REF:0000107 MGI:3758152 NCBI chr15:17,417,684...17,494,333
Ensembl chr15:35,675,348...35,750,315
JBrowse link
G TRAK1 trafficking kinesin protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:41,920,678...42,135,881
Ensembl chr 3:42,262,630...42,399,068
JBrowse link
G TRAK2 trafficking kinesin protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr2B:88,630,665...88,705,709
Ensembl chr2B:206,785,541...206,861,102
JBrowse link
G VAMP7 vesicle associated membrane protein 7 involved_in ISO PMID:22705394 UniProt PMID:22705394 RGD:10047362 NCBI chr  X:145,362,432...145,425,097
Ensembl chr  X:155,257,185...155,320,215
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16316
    localization 5238
      establishment of localization 4539
        establishment of organelle localization 475
          establishment of vesicle localization 182
            vesicle cytoskeletal trafficking 69
              dense core granule cytoskeletal transport + 12
              synaptic vesicle cytoskeletal transport + 22
              vesicle transport along actin filament + 16
              vesicle transport along microtubule + 48
Path 2
Term Annotations click to browse term
  biological_process 16316
    localization 5238
      establishment of localization 4539
        transport 4229
          intracellular transport 1334
            cytoskeleton-dependent intracellular transport 201
              vesicle cytoskeletal trafficking 69
                dense core granule cytoskeletal transport + 12
                synaptic vesicle cytoskeletal transport + 22
                vesicle transport along actin filament + 16
                vesicle transport along microtubule + 48
paths to the root