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ONTOLOGY REPORT - ANNOTATIONS

Term:vesicle cytoskeletal trafficking
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Accession:GO:0099518 term browser browse the term
Definition:The directed movement of a vesicle along a cytoskeletal fiber such as a microtubule or and actin filament, mediated by motor proteins.
Synonyms:exact_synonym: cytoskeletal fiber-based vesicle localization;   vesicle cytoskeletal transport


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vesicle cytoskeletal trafficking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc186 coiled-coil domain containing 186 acts_upstream_of_or_within ISO (PMID:27293546) MGI PMID:27293546 NCBI chr 2:59,342,166...59,372,575 JBrowse link
anterograde neuronal dense core vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif1a kinesin family member 1A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 4:164,956,198...165,040,765 JBrowse link
G Kif1b kinesin family member 1B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 1:11,468,855...11,599,593 JBrowse link
G Kif1c kinesin family member 1C involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 9:50,310,674...50,340,545 JBrowse link
G Sybu syntabulin ISO RGD PMID:17611281 RGD:13217407 NCBI chr 1:219,167,785...219,238,680 JBrowse link
anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 involved_in ISO (PMID:21998198) UniProt PMID:21998198 NCBI chr 3:201,782,994...201,982,976 JBrowse link
G Ap3b2 adaptor related protein complex 3 subunit beta 2 involved_in ISO (PMID:21998198) UniProt PMID:21998198 NCBI chr 2:118,768,204...118,801,724 JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in ISO (PMID:21998198) UniProt PMID:21998198 NCBI chr 1:154,141,521...154,176,648 JBrowse link
G Ap3m1 adaptor related protein complex 3 subunit mu 1 involved_in ISO (PMID:21998198) UniProt PMID:21998198 NCBI chr12:90,827,400...90,845,718 JBrowse link
G Ap3m2 adaptor related protein complex 3 subunit mu 2 involved_in ISO (PMID:21998198) UniProt PMID:21998198 NCBI chr13:63,614,708...63,636,331 JBrowse link
G Ap3s1 adaptor related protein complex 3 subunit sigma 1 involved_in ISO (PMID:21998198) UniProt PMID:21998198 NCBI chr15:40,252,086...40,310,935 JBrowse link
G Bloc1s1 biogenesis of lysosomal organelles complex 1 subunit 1 involved_in ISO (PMID:21998198) UniProt PMID:21998198 NCBI chr 1:156,396,667...156,400,283 JBrowse link
G Bloc1s2 biogenesis of lysosomal organelles complex 1 subunit 2 involved_in ISO (PMID:21998198) UniProt PMID:21998198 NCBI chr 2:43,669,626...43,676,631 JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex 1 subunit 3 involved_in ISO (PMID:21998198) UniProt PMID:21998198 NCBI chr 2:171,116,453...171,118,192 JBrowse link
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 involved_in ISO (PMID:21998198) UniProt PMID:21998198 NCBI chr11:68,386,409...68,387,427 JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:21998198) UniProt PMID:21998198 NCBI chr14:57,667,668...57,694,895 JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISO (PMID:21998198) UniProt PMID:21998198 NCBI chr 5:100,827,441...100,838,986 JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 involved_in ISO (PMID:21998198) UniProt PMID:21998198 NCBI chr14:63,913,600...64,105,232 JBrowse link
G Kif1a kinesin family member 1A involved_in ISO (PMID:7539720) SynGO PMID:7539720 NCBI chr 4:164,956,198...165,040,765 JBrowse link
G Kif1b kinesin family member 1B involved_in ISO (PMID:11389829) UniProt PMID:11389829 NCBI chr 1:11,468,855...11,599,593 JBrowse link
G Madd MAP kinase activating death domain involved_in ISO (PMID:18849981) SynGO PMID:18849981 NCBI chr 5:65,305,138...65,350,073 JBrowse link
G Snapin SNAP associated protein involved_in ISO (PMID:21998198) UniProt PMID:21998198 NCBI chr 3:63,128,171...63,129,987 JBrowse link
G Trim46 tripartite motif containing 46 acts_upstream_of_or_within ISO (PMID:26671463) MGI PMID:26671463 NCBI chr 3:64,430,807...64,442,767 JBrowse link
dense core granule cytoskeletal transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif1a kinesin family member 1A involved_in ISO PMID:29166604
PMID:30021165 		UniProt PMID:29166604 PMID:30021165 RGD:14995321 RGD:15023486 NCBI chr 4:164,956,198...165,040,765 JBrowse link
G Ppfia2 PPFI scaffold protein A2 involved_in ISO (PMID:30021165) UniProt PMID:30021165 NCBI chr 1:184,736,158...185,196,181 JBrowse link
G Syt4 synaptotagmin 4 involved_in ISO (PMID:29166604) UniProt PMID:29166604 RGD:15023486 NCBI chr15:42,358,362...42,367,739 JBrowse link
G Tanc2 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 involved_in ISO PMID:30021165 UniProt PMID:30021165 RGD:14995321 NCBI chr 9:73,182,253...73,507,608 JBrowse link
minus-end-directed vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kifc1 kinesin family member C1 acts_upstream_of_or_within ISO (PMID:17360972) MGI PMID:17360972 NCBI chr18:6,872,249...6,894,940 JBrowse link
negative regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnih2 cornichon family AMPA receptor auxiliary protein 2 involved_in ISO PMID:24094107 UniProt PMID:24094107 RGD:10400859 NCBI chr 2:2,553,190...2,558,848 JBrowse link
plus-end-directed vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 involved_in ISO (PMID:20100911) UniProt PMID:20100911 NCBI chr 8:114,892,119...114,959,137 JBrowse link
G Kif13a kinesin family member 13A involved_in ISO (PMID:11106728) UniProt PMID:11106728 NCBI chr14:65,733,688...65,918,225 JBrowse link
G Kif5b kinesin family member 5B acts_upstream_of_or_within ISO (PMID:17360972) MGI PMID:17360972 NCBI chr14:32,557,058...32,594,376 JBrowse link
positive regulation of anterograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Map2 microtubule associated protein 2 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 4:140,382,053...140,640,979 JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chr  X:128,480,073...128,534,447 JBrowse link
G Trim46 tripartite motif containing 46 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 3:64,430,807...64,442,767 JBrowse link
positive regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Map2 microtubule associated protein 2 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 4:140,382,053...140,640,979 JBrowse link
positive regulation of retrograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chr  X:128,480,073...128,534,447 JBrowse link
positive regulation of vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stk11 serine/threonine kinase 11 involved_in ISO (PMID:24643070) UniProt PMID:24643070 RGD:30309925 NCBI chr 1:154,744,704...154,760,762 JBrowse link
retrograde neuronal dense core vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif1a kinesin family member 1A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 4:164,956,198...165,040,765 JBrowse link
G Kif1b kinesin family member 1B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 1:11,468,855...11,599,593 JBrowse link
G Kif1c kinesin family member 1C involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 9:50,310,674...50,340,545 JBrowse link
G Kif5a kinesin family member 5A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 1:205,662,572...205,698,578 JBrowse link
G Kif5b kinesin family member 5B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr14:32,557,058...32,594,376 JBrowse link
vesicle transport along actin filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn4 actinin alpha 4 involved_in ISO (PMID:25918384) UniProt PMID:25918384 NCBI chr 2:167,039,350...167,108,681 JBrowse link
G Fnbp1l formin binding protein 1 like involved_in ISO (PMID:20730103) BHF-UCL PMID:20730103 NCBI chr 3:37,202,625...37,301,464 JBrowse link
G Myo1c myosin IC acts_upstream_of_or_within ISO (PMID:12490950) MGI PMID:12490950 NCBI chr 9:94,369,902...94,387,021 JBrowse link
G Myo5a myosin VA involved_in ISO (PMID:24006491) RGD
UniProt		 PMID:11470781 PMID:16190983 PMID:24006491 RGD:1600832 RGD:2306437 NCBI chr 8:69,350,857...69,513,052 JBrowse link
G Wasl WASP like actin nucleation promoting factor involved_in ISO PMID:20730103 BHF-UCL PMID:20730103 RGD:8554834 NCBI chr 6:114,678,779...114,727,518 JBrowse link
vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:22261744) UniProt PMID:22261744 NCBI chr 2:75,340,955...75,352,557 JBrowse link
G Dync1i1 dynein cytoplasmic 1 intermediate chain 1 involved_in ISO (PMID:24561039)
PMID:14985359 		UniProt
HGNC-UCL		 PMID:14985359 PMID:24561039 RGD:8553555 NCBI chr 6:132,611,294...132,731,099 JBrowse link
G Hap1 huntingtin associated protein 1 acts_upstream_of_or_within ISO (PMID:15242649) MGI PMID:15242649 NCBI chr 9:59,651,218...59,659,558 JBrowse link
G Htt huntingtin involved_in
acts_upstream_of_or_within 		ISO (PMID:20515468)
(PMID:15242649) 		UniProt
MGI		 PMID:15242649 PMID:20515468 NCBI chr11:70,172,908...70,315,186 JBrowse link
G Kif5b kinesin family member 5B acts_upstream_of_or_within
involved_in 		ISO (PMID:17360972)
(PMID:28426968)
PMID:14985359 		MGI
ARUK-UCL
HGNC-UCL		 PMID:14985359 PMID:17360972 PMID:28426968 RGD:8553555 NCBI chr14:32,557,058...32,594,376 JBrowse link
G Kifc1 kinesin family member C1 acts_upstream_of_or_within ISO (PMID:17360972) MGI PMID:17360972 NCBI chr18:6,872,249...6,894,940 JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 ISO positive regulation of bidirectional melanosome transport along microtubules RGD PMID:15753041 RGD:2293208 NCBI chr 8:58,490,586...58,560,952 JBrowse link
G Nde1 nudE neurodevelopment protein 1 acts_upstream_of_or_within ISO (PMID:16107726) MGI PMID:16107726 NCBI chr 9:8,038,031...8,077,922 JBrowse link
G Ndel1 nudE neurodevelopment protein 1 like 1 acts_upstream_of_or_within ISO (PMID:16107726) MGI PMID:16107726 NCBI chr 9:48,420,107...48,458,469 JBrowse link
G Pafah1b1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 acts_upstream_of_or_within ISO (PMID:16107726) MGI PMID:16107726 NCBI chr 9:93,406,083...93,464,249 JBrowse link
G Prkcz protein kinase C zeta ISO Slc10a1/Ntcp-containing early endosomes RGD PMID:16734659 RGD:1642664 NCBI chr 1:5,350,189...5,461,946 JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in ISO (PMID:21303926) UniProt PMID:21303926 RGD:8554665 NCBI chr11:88,482,273...88,508,509 JBrowse link
G Rasgrp1 RAS guanyl releasing protein 1 acts_upstream_of_or_within ISO (PMID:17190838) MGI PMID:17190838 NCBI chr 5:95,449,735...95,509,228 JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO (PMID:37871017) MGI PMID:37871017 NCBI chr 5:100,164,257...100,230,360 JBrowse link
G Vamp7 vesicle associated membrane protein 7 involved_in ISO PMID:22705394 UniProt PMID:22705394 RGD:10047362 NCBI chr16:15,277,986...15,303,416 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12423
    localization 4251
      establishment of localization 3580
        establishment of organelle localization 309
          establishment of vesicle localization 147
            vesicle cytoskeletal trafficking 51
              dense core granule cytoskeletal transport + 12
              synaptic vesicle cytoskeletal transport + 20
              vesicle transport along actin filament + 5
              vesicle transport along microtubule + 42
Path 2
Term Annotations click to browse term
  biological_process 12423
    localization 4251
      establishment of localization 3580
        transport 3363
          intracellular transport 1031
            cytoskeleton-dependent intracellular transport 157
              vesicle cytoskeletal trafficking 51
                dense core granule cytoskeletal transport + 12
                synaptic vesicle cytoskeletal transport + 20
                vesicle transport along actin filament + 5
                vesicle transport along microtubule + 42
paths to the root