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ONTOLOGY REPORT - ANNOTATIONS

Term:trans-synaptic signaling by BDNF
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Accession:GO:0099191 term browser browse the term
Definition:Cell-cell signaling between presynapse and postsynapse mediated by brain-derived neurotrophic factor (BDNF) crossing the synaptic cleft.
Synonyms:exact_synonym: trans-synaptic signaling by brain-derived neurotrophic factor


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trans-synaptic signaling by BDNF term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mecp2 methyl CpG binding protein 2 acts_upstream_of ISO MGI:2137311 (PMID:17050729) RGD PMID:17050729 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689 		JBrowse link
regulation of trans-synaptic signaling by BDNF, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slitrk5 SLIT and NTRK-like family, member 5 involved_in ISO (PMID:26004511) RGD PMID:26004511 NCBI chr15:88,848,123...88,858,809
Ensembl chr15:88,847,535...88,856,836 		JBrowse link
G Syt4 synaptotagmin 4 involved_in ISO (PMID:19448629) RGD PMID:19448629 NCBI chr18:23,036,973...23,046,380
Ensembl chr18:23,038,378...23,046,332 		JBrowse link
trans-synaptic signaling by BDNF, modulating synaptic transmission term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain-derived neurotrophic factor involved_in ISO (PMID:19448629) RGD PMID:19448629 NCBI chr 3:96,165,042...96,215,621
Ensembl chr 3:96,165,042...96,215,615 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 involved_in IEA
ISO		 GO_REF:0000107
(PMID:24991961)		 Ensembl
RGD		 PMID:24991961 GO_REF:0000107 NCBI chr17:5,558,992...5,870,299
Ensembl chr17:5,559,043...5,869,136 		JBrowse link
G Plat plasminogen activator, tissue type involved_in IEA
ISO		 GO_REF:0000107
(PMID:15486301)		 Ensembl
RGD		 PMID:15486301 GO_REF:0000107 NCBI chr16:69,240,582...69,265,177
Ensembl chr16:69,240,585...69,268,223 		JBrowse link
G Plg plasminogen involved_in IEA
ISO		 GO_REF:0000107
(PMID:15486301)		 Ensembl
RGD		 PMID:15486301 GO_REF:0000107 NCBI chr 1:48,325,186...48,367,643
Ensembl chr 1:48,325,185...48,367,786 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20292
    cellular process 18769
      cell communication 7855
        cell-cell signaling 1472
          synaptic signaling 1000
            trans-synaptic signaling 961
              trans-synaptic signaling by BDNF 7
                trans-synaptic signaling by BDNF, modulating synaptic transmission + 6
Path 2
Term Annotations click to browse term
  biological_process 20292
    biological regulation 13633
      regulation of biological process 13220
        signaling 7729
          cell-cell signaling 1472
            synaptic signaling 1000
              trans-synaptic signaling 961
                trans-synaptic signaling by BDNF 7
                  trans-synaptic signaling by BDNF, modulating synaptic transmission + 6
paths to the root