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ONTOLOGY REPORT - ANNOTATIONS


Term:synaptonemal structure
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Accession:GO:0099086 term browser browse the term
Definition:A proteinaceous scaffold found between homologous chromosomes during meiosis.



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central element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Incenp inner centromere protein located_in ISO (MGI:2653770|PMID:12584241) RGD PMID:12584241 MGI:2653770 NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265
JBrowse link
G Six6os1 Six6 opposite strand transcript 1 located_in
is_active_in
ISO
IBA
(MGI:5822939|PMID:27796301)
PMID:21873635
RGD PMID:27796301 PMID:21873635 MGI:5822939, RGD:13792537 NCBI chr 6:91,579,185...91,615,183
Ensembl chr 6:91,579,325...91,615,148
JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in ISO (MGI:3581466|PMID:15944401), (MGI:5315075|PMID:22164254) RGD PMID:15944401 PMID:22164254 MGI:3581466 MGI:5315075 NCBI chr 1:195,852,171...195,863,174
Ensembl chr 1:195,852,172...195,863,174
JBrowse link
G Syce2 synaptonemal complex central element protein 2 located_in
is_active_in
ISO
IBA
(MGI:3581466|PMID:15944401), (MGI:5315075|PMID:22164254), (MGI:5504589|PMID:22854038)
PMID:21873635
RGD PMID:15944401 PMID:22164254 PMID:22854038 PMID:21873635 MGI:3581466 MGI:5315075 MGI:5504589, RGD:13792537 NCBI chr19:23,266,236...23,291,265 JBrowse link
G Syce3 synaptonemal complex central element protein 3 located_in
is_active_in
ISO
IBA
(MGI:5008660|PMID:21637789), (MGI:5315075|PMID:22164254)
PMID:21873635
RGD PMID:21637789 PMID:22164254 PMID:21873635 MGI:5008660 MGI:5315075, RGD:13792537 NCBI chr 7:120,456,800...120,482,882
Ensembl chr 7:120,456,800...120,482,973
JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in
is_active_in
IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(MGI:2653770|PMID:12584241), (MGI:5470363|PMID:23133398)
Ensembl
RGD
PMID:12584241 PMID:23133398 PMID:21873635 GO_REF:0000107 MGI:2653770 MGI:5470363, RGD:13792537 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737
JBrowse link
G Tex11 testis expressed 11 located_in
is_active_in
ISO
IBA
(MGI:3774244|PMID:18316482)
PMID:21873635
RGD PMID:18316482 PMID:21873635 MGI:3774244, RGD:13792537 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187
JBrowse link
G Tex12 testis expressed 12 located_in
is_active_in
ISO
IBA
(MGI:3664716|PMID:16968740), (MGI:5315075|PMID:22164254), (MGI:5504589|PMID:22854038)
PMID:21873635
RGD PMID:16968740 PMID:22164254 PMID:22854038 PMID:21873635 MGI:3664716 MGI:5315075 MGI:5504589, RGD:13792537 NCBI chr 8:50,908,161...50,913,205
Ensembl chr 8:50,909,052...50,913,217
JBrowse link
lateral element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07027258.1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 PMID:21873635 RGD:13792537, RGD:13792537 Ensembl chr17:23,592,899...23,648,306 JBrowse link
G Blm BLM RecQ like helicase located_in ISO (PMID:10728666) RGD PMID:10728666 NCBI chr 1:134,409,832...134,496,073
Ensembl chr 1:134,409,857...134,484,312
JBrowse link
G Brca1 BRCA1, DNA repair associated located_in ISO
IEA
(PMID:9774970)
GO_REF:0000107
RGD
Ensembl
PMID:9774970 GO_REF:0000107 NCBI chr10:86,417,441...86,477,762
Ensembl chr10:86,418,000...86,477,304
JBrowse link
G Brca2 BRCA2, DNA repair associated located_in ISO
IEA
(PMID:9774970)
GO_REF:0000107
RGD
Ensembl
PMID:9774970 GO_REF:0000107 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567
JBrowse link
G Incenp inner centromere protein located_in ISO (MGI:3839184|PMID:19283064) RGD PMID:19283064 MGI:3839184 NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265
JBrowse link
G Kash5 KASH domain containing 5 located_in
is_active_in
ISO
IBA
(MGI:5515826|PMID:24062341)
PMID:21873635
RGD PMID:24062341 PMID:21873635 MGI:5515826, RGD:13792537 NCBI chr 1:95,668,918...95,691,353
Ensembl chr 1:95,668,886...95,691,368
JBrowse link
G Mei4 meiotic double-stranded break formation protein 4 located_in
is_active_in
ISO
IBA
(MGI:4457793|PMID:20551173)
PMID:21873635
RGD PMID:20551173 PMID:21873635 MGI:4457793, RGD:13792537 NCBI chr 8:82,765,661...82,939,649
Ensembl chr 8:82,765,661...82,939,649
JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 located_in ISO (MGI:5288570|PMID:21743440) RGD PMID:21743440 MGI:5288570 NCBI chr 3:140,160,128...140,188,324
Ensembl chr 3:140,160,118...140,188,298
JBrowse link
G Rad51 RAD51 recombinase located_in ISO (MGI:3813746|PMID:18694567), (MGI:5288570|PMID:21743440)
(PMID:9774970)
RGD PMID:9774970 PMID:18694567 PMID:21743440 MGI:3813746 MGI:5288570 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
JBrowse link
G Rec8 REC8 meiotic recombination protein located_in ISO (MGI:3578071|PMID:15870106) RGD PMID:15870106 MGI:3578071 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326
JBrowse link
G Rpa1 replication protein A1 located_in ISO (MGI:5288570|PMID:21743440), (MGI:5428050|PMID:22711701) RGD PMID:21743440 PMID:22711701 MGI:5288570 MGI:5428050 NCBI chr10:60,148,869...60,199,999
Ensembl chr10:60,148,793...60,199,949
JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (MGI:3578071|PMID:15870106), (MGI:5428050|PMID:22711701) RGD PMID:15870106 PMID:22711701 MGI:3578071 MGI:5428050 NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744
JBrowse link
G Smc3 structural maintenance of chromosomes 3 located_in IEA
ISO
GO_REF:0000107
(MGI:3578071|PMID:15870106), (MGI:5428050|PMID:22711701)
Ensembl
RGD
PMID:15870106 PMID:22711701 GO_REF:0000107 MGI:3578071 MGI:5428050 NCBI chr 1:252,601,422...252,644,522
Ensembl chr 1:252,601,753...252,644,522
JBrowse link
G Stag3 stromal antigen 3 located_in ISO (MGI:5428050|PMID:22711701) RGD PMID:22711701 MGI:5428050 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935
JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in
is_active_in
IDA
IBA
ISO
PMID:9933407
PMID:21873635
(MGI:3794139|PMID:18283110), (MGI:5314623|PMID:22011390), (MGI:5428050|PMID:22711701), (MGI:5470363|PMID:23133398)
RGD PMID:18283110 PMID:22011390 PMID:22711701 PMID:23133398 PMID:9933407 More... MGI:3794139 MGI:5314623 MGI:5428050 MGI:5470363, RGD:11035335, RGD:13792537, RGD:13792537 NCBI chr 3:165,431,715...165,502,134
Ensembl chr 3:165,436,331...165,498,789
JBrowse link
G Sycp2l synaptonemal complex protein 2-like located_in ISO (MGI:5692009|PMID:26362258) RGD PMID:26362258 MGI:5692009 NCBI chr17:23,589,217...23,645,273 JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in IDA
ISO
PMID:9933407
(MGI:1352918|PMID:10678170), (MGI:3839184|PMID:19283064), (MGI:4452449|PMID:18802469), (MGI:5049827|PMID:21539824), (MGI:5288570|PMID:21743440), (MGI:5314623|PMID:22011390), (MGI:5428050|PMID:22711701), (MGI:5470363|PMID:23133398), (MGI:5477835|PMID:23555294), (MGI:5504589|PMID:22854038), (MGI:5609844|PMID:25533956), (MGI:5661094|PMID:25675407)
RGD PMID:10678170 PMID:18802469 PMID:19283064 PMID:21539824 PMID:21743440 More... MGI:1352918 MGI:3839184 MGI:4452449 MGI:5049827 MGI:5288570 MGI:5314623 MGI:5428050 MGI:5470363 MGI:5477835 MGI:5504589 MGI:5609844 MGI:5661094, RGD:11035335 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511
JBrowse link
synaptonemal complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1ip1 cyclin B1 interacting protein 1 colocalizes_with ISO (MGI:5545848|PMID:24390283) RGD PMID:24390283 MGI:5545848 NCBI chr15:24,014,905...24,031,357
Ensembl chr15:24,014,908...24,028,475
JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 located_in ISS
ISO
GO_REF:0000024
(MGI:2662793|PMID:12764197)
UniProt
RGD
PMID:12764197 GO_REF:0000024 MGI:2662793 NCBI chr12:21,318,251...21,390,350
Ensembl chr12:21,319,568...21,390,350
JBrowse link
G Hormad1 HORMA domain containing 1 located_in ISO (MGI:5504589|PMID:22854038) RGD PMID:22854038 MGI:5504589 NCBI chr 2:183,115,815...183,152,383
Ensembl chr 2:183,116,716...183,152,383
JBrowse link
G Hormad2 HORMA domain containing 2 located_in ISO (MGI:5504589|PMID:22854038) RGD PMID:22854038 MGI:5504589 NCBI chr14:79,215,013...79,300,447
Ensembl chr14:79,214,998...79,299,910
JBrowse link
G Hspa2 heat shock protein family A (Hsp70) member 2 located_in ISO (MGI:82564|PMID:8622925) RGD PMID:8622925 MGI:82564 NCBI chr 6:95,128,504...95,131,281
Ensembl chr 6:95,128,350...95,131,287
JBrowse link
G Incenp inner centromere protein located_in ISO (MGI:2653770|PMID:12584241) RGD PMID:12584241 MGI:2653770 NCBI chr 1:206,520,655...206,550,575
Ensembl chr 1:206,523,380...206,553,265
JBrowse link
G Lig3 DNA ligase 3 located_in ISO (MGI:85057|PMID:9001252) RGD PMID:9001252 MGI:85057 NCBI chr10:67,717,796...67,741,141
Ensembl chr10:67,717,812...67,798,414
JBrowse link
G LOC100911002 synaptonemal complex protein 3-like is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:150,990,742...151,008,064
Ensembl chr  X:150,990,735...151,003,268
JBrowse link
G LOC100911047 X-linked lymphocyte-regulated protein 3A-like is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:150,935,437...150,947,126
Ensembl chr  X:150,935,511...150,946,614
JBrowse link
G Mlh1 mutL homolog 1 located_in IEA
IDA
ISO
GO_REF:0000107
PMID:16968740
(MGI:3056006|PMID:15467367), (MGI:3612193|PMID:16260499)
Ensembl
RGD
PMID:15467367 PMID:16260499 PMID:16968740 GO_REF:0000107 MGI:3056006 MGI:3612193, RGD:8554354 NCBI chr 8:111,196,468...111,233,721
Ensembl chr 8:111,196,468...111,233,617
JBrowse link
G Mlh3 mutL homolog 3 located_in ISO (MGI:3056006|PMID:15467367), (MGI:3612193|PMID:16260499) RGD PMID:15467367 PMID:16260499 MGI:3056006 MGI:3612193 NCBI chr 6:104,881,483...104,917,686
Ensembl chr 6:104,881,483...104,917,728
JBrowse link
G Msh4 mutS homolog 4 located_in
is_active_in
ISO
IBA
(MGI:1858570|PMID:10809667), (MGI:3612193|PMID:16260499)
PMID:21873635
RGD PMID:10809667 PMID:16260499 PMID:21873635 MGI:1858570 MGI:3612193, RGD:13792537 NCBI chr 2:242,785,392...242,844,609
Ensembl chr 2:242,792,661...242,843,487
JBrowse link
G Msh5 mutS homolog 5 located_in ISO (MGI:3612193|PMID:16260499) RGD PMID:16260499 MGI:3612193 NCBI chr20:3,773,867...3,793,337
Ensembl chr20:3,776,942...3,793,336
JBrowse link
G P3h4 prolyl 3-hydroxylase family member 4 IDA RGD PMID:1363622 RGD:633987 NCBI chr10:85,338,158...85,345,108
Ensembl chr10:85,338,161...85,345,093
JBrowse link
G Plk1 polo-like kinase 1 located_in IEA
ISO
GO_REF:0000107
(MGI:5504589|PMID:22854038)
Ensembl
RGD
PMID:22854038 GO_REF:0000107 MGI:5504589 NCBI chr 1:176,716,420...176,726,400
Ensembl chr 1:176,716,420...176,726,400
JBrowse link
G Rad21 RAD21 cohesin complex component is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:83,287,867...83,314,810
Ensembl chr 7:83,287,870...83,314,817
JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:140,160,128...140,188,324
Ensembl chr 3:140,160,118...140,188,298
JBrowse link
G Rec8 REC8 meiotic recombination protein located_in
is_active_in
ISO
IBA
(MGI:2667549|PMID:12759374)
PMID:21873635
RGD PMID:12759374 PMID:21873635 MGI:2667549, RGD:13792537 NCBI chr15:29,109,862...29,117,327
Ensembl chr15:29,109,863...29,117,326
JBrowse link
G RGD1559891 similar to synaptonemal complex protein 3 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:186,108,544...186,111,598
Ensembl chr 1:186,108,920...186,109,630
JBrowse link
G Rnf212 ring finger protein 212 colocalizes_with
is_active_in
ISO
IBA
(MGI:5487470|PMID:23396135), (MGI:5545848|PMID:24390283)
PMID:21873635
RGD PMID:23396135 PMID:24390283 PMID:21873635 MGI:5487470 MGI:5545848, RGD:13792537 NCBI chr14:949,397...988,377
Ensembl chr14:949,448...987,831
JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO (MGI:2150452|PMID:11564881), (MGI:3664716|PMID:16968740) RGD PMID:11564881 PMID:16968740 MGI:2150452 MGI:3664716 NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744
JBrowse link
G Stag3 stromal antigen 3 located_in TAS
ISO
(MGI:1354041|PMID:10698974) RGD PMID:10698974 PMID:11599053 MGI:1354041, RGD:727325 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935
JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in
is_active_in
IDA
IBA
PMID:16968740
PMID:21873635
MGI
GO_Central
PMID:16968740 PMID:21873635 PMID:21873635 RGD:8554354, RGD:13792537, RGD:13792537 NCBI chr 1:195,852,171...195,863,174
Ensembl chr 1:195,852,172...195,863,174
JBrowse link
G Syce1l synaptonemal complex central element protein 1-like is_active_in IBA PMID:21873635 GO_Central PMID:21873635 PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr19:41,625,074...41,635,541
Ensembl chr19:41,617,180...41,635,526
JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in IDA
ISO
(MGI:2664436|PMID:12815066), (MGI:3579731|PMID:15937223), (MGI:3664716|PMID:16968740), (MGI:3719060|PMID:17696610), (MGI:3771519|PMID:18070917), (MGI:3774244|PMID:18316482), (MGI:4457793|PMID:20551173), (MGI:5314623|PMID:22011390), (MGI:5661094|PMID:25675407), (MGI:5697228|PMID:26358182), (MGI:5700253|PMID:26490168), (MGI:5805564|PMID:27760146), (MGI:5811689|PMID:27856912), (MGI:5824447|PMID:27473657) RGD PMID:12815066 PMID:15937223 PMID:16968740 PMID:17696610 PMID:18070917 More... MGI:2664436 MGI:3579731 MGI:3664716 MGI:3719060 MGI:3771519 MGI:3774244 MGI:4457793 MGI:5314623 MGI:5661094 MGI:5697228 MGI:5700253 MGI:5805564 MGI:5811689 MGI:5824447, RGD:9686370 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737
JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in IDA
ISO
(MGI:3774244|PMID:18316482), (MGI:5692009|PMID:26362258) RGD PMID:18316482 PMID:26362258 PMID:9592139 MGI:3774244 MGI:5692009, RGD:69387 NCBI chr 3:165,431,715...165,502,134
Ensembl chr 3:165,436,331...165,498,789
JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in
is_active_in
ISO
IBA
(MGI:2664436|PMID:12815066), (MGI:3027482|PMID:14736746), (MGI:3528534|PMID:15657431), (MGI:3615835|PMID:16428451), (MGI:3664716|PMID:16968740), (MGI:3695528|PMID:17141210), (MGI:3719060|PMID:17696610), (MGI:3770581|PMID:17912366), (MGI:3771519|PMID:18070917), (MGI:4457793|PMID:20551173), (MGI:5504589|PMID:22854038), (MGI:5509253|PMID:23810942), (MGI:5697228|PMID:26358182), (MGI:5700253|PMID:26490168), (MGI:5805564|PMID:27760146), (MGI:5811689|PMID:27856912), (MGI:5824447|PMID:27473657)
(PMID:9774970)
PMID:21873635
RGD PMID:9774970 PMID:12815066 PMID:14736746 PMID:15657431 PMID:16428451 More... MGI:2664436 MGI:3027482 MGI:3528534 MGI:3615835 MGI:3664716 MGI:3695528 MGI:3719060 MGI:3770581 MGI:3771519 MGI:4457793 MGI:5504589 MGI:5509253 MGI:5697228 MGI:5700253 MGI:5805564 MGI:5811689 MGI:5824447, RGD:13792537 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511
JBrowse link
G Syn1 synapsin I located_in ISO (MGI:3027482|PMID:14736746) RGD PMID:14736746 MGI:3027482 NCBI chr  X:1,172,208...1,227,400
Ensembl chr  X:1,172,208...1,227,396
JBrowse link
G Tex11 testis expressed 11 colocalizes_with ISO (MGI:3797180|PMID:18369460) RGD PMID:18369460 MGI:3797180 NCBI chr  X:65,932,904...66,196,525
Ensembl chr  X:65,932,988...66,196,187
JBrowse link
G Tex12 testis expressed 12 located_in ISO (MGI:3664716|PMID:16968740) RGD PMID:16968740 MGI:3664716 NCBI chr 8:50,908,161...50,913,205
Ensembl chr 8:50,909,052...50,913,217
JBrowse link
G Wapl WAPL cohesin release factor located_in ISO (MGI:3525912|PMID:15620708) RGD PMID:15620708 MGI:3525912 NCBI chr16:10,005,520...10,075,270
Ensembl chr16:10,004,941...10,073,510
JBrowse link
G Xlr3a X-linked lymphocyte-regulated 3A is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:150,967,362...150,979,056
Ensembl chr  X:150,967,919...150,978,992
JBrowse link
G Xlr4a X-linked lymphocyte-regulated 4A is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:150,916,647...150,925,201
Ensembl chr  X:150,916,932...150,929,786
JBrowse link
transverse filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stag3 stromal antigen 3 located_in ISO (MGI:3578071|PMID:15870106) RGD PMID:15870106 MGI:3578071 NCBI chr12:17,284,677...17,314,936
Ensembl chr12:17,284,794...17,314,935
JBrowse link
G Sycp1 synaptonemal complex protein 1 is_active_in
located_in
IDA
IBA
ISO
IEA
PMID:21873635
(MGI:3578071|PMID:15870106), (MGI:3794139|PMID:18283110), (MGI:5049827|PMID:21539824), (MGI:5428050|PMID:22711701)
GO_REF:0000107
RGD
Ensembl
PMID:15870106 PMID:18283110 PMID:21539824 PMID:22711701 PMID:1464329 More... GO_REF:0000107 MGI:3578071 MGI:3794139 MGI:5049827 MGI:5428050, RGD:729937, RGD:13792537 NCBI chr 2:190,296,688...190,456,687
Ensembl chr 2:190,296,954...190,456,737
JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO (MGI:3578071|PMID:15870106) RGD PMID:15870106 MGI:3578071 NCBI chr 7:22,874,055...22,888,512
Ensembl chr 7:22,874,055...22,888,511
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Path 1
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  cellular_component 20009
    cellular anatomical entity 19717
      synaptonemal structure 46
        linear element 0
        synaptonemal complex + 46
Path 2
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  cellular_component 20009
    cellular anatomical entity 19717
      organelle 13110
        intracellular organelle 12755
          intracellular membrane-bounded organelle 11240
            nucleus 7066
              nuclear lumen 3949
                nuclear chromosome 246
                  condensed nuclear chromosome 89
                    synaptonemal structure 46
                      linear element 0
                      synaptonemal complex + 46
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