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ONTOLOGY REPORT - ANNOTATIONS

Term:synaptonemal structure
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Accession:GO:0099086 term browser browse the term
Definition:A proteinaceous scaffold found between homologous chromosomes during meiosis.


show annotations for term's descendants           Sort by:
central element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Incenp inner centromere protein located_in ISO
IEA		 (PMID:12584241)
GO_REF:0000107		 RGD
Ensembl		 PMID:12584241 GO_REF:0000107 NCBI chr 1:215,945,558...216,017,247
Ensembl chr 1:206,523,380...206,553,265 		JBrowse link
G Six6os1 Six6 opposite strand transcript 1 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:27796301)		 GO_Central
RGD		 PMID:27796301 GO_REF:0000033 NCBI chr 6:97,314,829...97,351,069
Ensembl chr 6:91,579,325...91,615,148 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in ISO (PMID:15944401), (PMID:22164254) RGD PMID:15944401 PMID:22164254 NCBI chr 1:205,281,808...205,292,811
Ensembl chr 1:195,852,172...195,863,174 		JBrowse link
G Syce2 synaptonemal complex central element protein 2 located_in ISO
IEA		 (PMID:15944401), (PMID:22164254), (PMID:22854038)
GO_REF:0000002		 RGD
InterPro		 PMID:15944401 PMID:22164254 PMID:22854038 GO_REF:0000002 NCBI chr19:40,173,713...40,195,959
Ensembl chr19:23,268,869...23,300,980 		JBrowse link
G Syce3 synaptonemal complex central element protein 3 is_active_in
located_in		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:21637789), (PMID:22164254)		 GO_Central
Ensembl
RGD		 PMID:21637789 PMID:22164254 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:122,336,427...122,362,608
Ensembl chr 7:120,456,800...120,482,973 		JBrowse link
G Sycp1 synaptonemal complex protein 1 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:12584241), (PMID:23133398)		 GO_Central
RGD		 PMID:12584241 PMID:23133398 GO_REF:0000033 NCBI chr 2:192,985,164...193,145,234
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Tex11 testis expressed 11 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:18316482)		 GO_Central
RGD		 PMID:18316482 GO_REF:0000033 NCBI chr  X:69,973,012...70,236,544
Ensembl chr  X:65,932,988...66,196,187 		JBrowse link
G Tex12 testis expressed 12 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:16968740), (PMID:22164254), (PMID:22854038)		 GO_Central
RGD		 PMID:16968740 PMID:22164254 PMID:22854038 GO_REF:0000033 NCBI chr 8:59,804,662...59,809,595
Ensembl chr 8:50,909,052...50,913,217 		JBrowse link
lateral element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase located_in ISO
IEA		 (PMID:10728666)
GO_REF:0000107		 RGD
Ensembl		 PMID:10728666 GO_REF:0000107 NCBI chr 1:143,819,072...143,905,300
Ensembl chr 1:134,409,857...134,484,312 		JBrowse link
G Brca1 BRCA1, DNA repair associated located_in ISO (PMID:9774970) RGD PMID:9774970 NCBI chr10:86,917,693...86,978,012
Ensembl chr10:86,418,000...86,477,304 		JBrowse link
G Brca2 BRCA2, DNA repair associated located_in ISO (PMID:9774970) RGD PMID:9774970 NCBI chr12:4,895,092...4,939,340
Ensembl chr12:59,819...100,567 		JBrowse link
G Dmc1 DNA meiotic recombinase 1 located_in ISO
IEA		 (PMID:30718482)
GO_REF:0000107		 RGD
Ensembl		 PMID:30718482 GO_REF:0000107 NCBI chr 7:113,005,278...113,047,854
Ensembl chr 7:111,124,888...111,167,952 		JBrowse link
G Incenp inner centromere protein located_in ISO
IEA		 (PMID:19283064)
GO_REF:0000107		 RGD
Ensembl		 PMID:19283064 GO_REF:0000107 NCBI chr 1:215,945,558...216,017,247
Ensembl chr 1:206,523,380...206,553,265 		JBrowse link
G Kash5 KASH domain containing 5 is_active_in
located_in		 IBA
ISO		 GO_REF:0000033
(PMID:24062341)		 GO_Central
RGD		 PMID:24062341 GO_REF:0000033 NCBI chr 1:104,805,248...104,827,720
Ensembl chr 1:95,668,886...95,691,368 		JBrowse link
G Mei4 meiotic double-stranded break formation protein 4 is_active_in
located_in		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:20551173)		 GO_Central
Ensembl
RGD		 PMID:20551173 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:91,645,791...91,819,776
Ensembl chr 8:82,765,661...82,939,649 		JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 located_in ISO
IEA		 (PMID:21743440)
GO_REF:0000107		 RGD
Ensembl		 PMID:21743440 GO_REF:0000107 NCBI chr 3:160,620,500...160,648,716
Ensembl chr 3:140,160,118...140,188,298 		JBrowse link
G Rad51 RAD51 recombinase located_in ISO
IEA		 (PMID:9774970)
GO_REF:0000107
(PMID:18694567), (PMID:21743440)		 RGD
Ensembl		 PMID:9774970 PMID:18694567 PMID:21743440 GO_REF:0000107 NCBI chr 3:126,554,210...126,578,888
Ensembl chr 3:106,100,381...106,125,035 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in ISO
IEA		 (PMID:15870106), (PMID:32328639)
GO_REF:0000107		 RGD
Ensembl		 PMID:15870106 PMID:32328639 GO_REF:0000107 NCBI chr15:33,079,818...33,087,283
Ensembl chr15:29,109,863...29,117,326 		JBrowse link
G Rpa1 replication protein A1 located_in ISO
IEA		 (PMID:21743440), (PMID:22711701)
GO_REF:0000107		 RGD
Ensembl		 PMID:21743440 PMID:22711701 GO_REF:0000107 NCBI chr10:60,647,185...60,698,279
Ensembl chr10:60,148,793...60,199,949 		JBrowse link
G Smc1a structural maintenance of chromosomes 1A IDA MMO:0000662 RGD PMID:10652260 RGD:1331378 NCBI chr  X:24,582,732...24,627,462
Ensembl chr  X:21,103,282...21,148,056 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO
IEA		 (PMID:15870106), (PMID:22711701)
GO_REF:0000107		 RGD
Ensembl		 PMID:15870106 PMID:22711701 GO_REF:0000107 NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744 		JBrowse link
G Smc3 structural maintenance of chromosomes 3 located_in IEA
ISO		 GO_REF:0000107
(PMID:15870106), (PMID:22711701), (PMID:32328639)		 Ensembl
RGD		 PMID:15870106 PMID:22711701 PMID:32328639 GO_REF:0000107 NCBI chr 1:262,606,731...262,649,832
Ensembl chr 1:252,601,753...252,644,522 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in ISO
IEA		 (PMID:22711701)
GO_REF:0000107		 RGD
Ensembl		 PMID:22711701 GO_REF:0000107 NCBI chr12:22,398,291...22,428,548
Ensembl chr12:17,284,794...17,314,935 		JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in
is_active_in		 IDA
ISO
IBA
IEA		 PMID:9933407
(PMID:18283110), (PMID:22011390), (PMID:22711701), (PMID:23133398)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:18283110 PMID:22011390 PMID:22711701 PMID:23133398 PMID:9933407 GO_REF:0000033 GO_REF:0000107, RGD:11035335 NCBI chr 3:185,814,033...185,876,516
Ensembl chr 3:165,436,331...165,498,789 		JBrowse link
G Sycp2l synaptonemal complex protein 2-like is_active_in
located_in		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
(PMID:26362258)		 GO_Central
Ensembl
RGD		 PMID:26362258 GO_REF:0000033 GO_REF:0000107 NCBI chr17:23,798,424...23,851,017
Ensembl chr17:23,592,899...23,648,306 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in IDA
ISO		 PMID:9933407
(PMID:10678170), (PMID:18802469), (PMID:19283064), (PMID:21539824), (PMID:21743440), (PMID:22011390), (PMID:22711701), (PMID:22854038), (PMID:23133398), (PMID:23555294), (PMID:25533956), (PMID:25675407)		 RGD PMID:10678170 PMID:18802469 PMID:19283064 PMID:21539824 PMID:21743440 More... RGD:11035335 NCBI chr 7:24,761,476...24,775,933
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
synaptonemal complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 3830403N18Rikl RIKEN cDNA 3830403N18 gene like is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:133,561,127...133,574,507
Ensembl chr  X:133,556,226...133,574,454 		JBrowse link
G Ccnb1ip1 cyclin B1 interacting protein 1 located_in ISO
IEA		 (PMID:24390283)
GO_REF:0000002		 RGD
InterPro		 PMID:24390283 GO_REF:0000002 NCBI chr15:26,488,462...26,504,167
Ensembl chr15:24,014,908...24,028,475 		JBrowse link
G Fam9c family with sequence similarity 9, member C is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:146,236,386...146,256,079
Ensembl chr  X:146,236,934...146,256,051 		JBrowse link
G Fam9cl1 family with sequence similarity 9, member C like 1 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:146,218,106...146,237,824
Ensembl chr  X:146,218,018...146,236,058
Ensembl chr  X:146,218,018...146,236,058 		JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 located_in ISS
ISO		 GO_REF:0000024
(PMID:12764197)		 UniProt
RGD		 PMID:12764197 GO_REF:0000024 NCBI chr12:21,318,251...21,390,350
Ensembl chr12:21,319,568...21,390,350 		JBrowse link
G Hormad1 HORMA domain containing 1 located_in ISO
IEA		 (PMID:22854038)
GO_REF:0000107		 RGD
Ensembl		 PMID:22854038 GO_REF:0000107 NCBI chr 2:185,803,572...185,841,449
Ensembl chr 2:183,116,716...183,152,383 		JBrowse link
G Hormad2 HORMA domain containing 2 located_in ISO
IEA		 (PMID:22854038)
GO_REF:0000107		 RGD
Ensembl		 PMID:22854038 GO_REF:0000107 NCBI chr14:79,215,013...79,300,447
Ensembl chr14:79,214,998...79,299,910 		JBrowse link
G Hspa2 heat shock protein family A (Hsp70) member 2 located_in ISO
IEA		 (PMID:8622925)
GO_REF:0000107		 RGD
Ensembl		 PMID:8622925 GO_REF:0000107 NCBI chr 6:100,864,172...100,866,946
Ensembl chr 6:95,128,350...95,131,287 		JBrowse link
G Incenp inner centromere protein located_in ISO
IEA		 (PMID:12584241)
GO_REF:0000107		 RGD
Ensembl		 PMID:12584241 GO_REF:0000107 NCBI chr 1:215,945,558...216,017,247
Ensembl chr 1:206,523,380...206,553,265 		JBrowse link
G Lig3 DNA ligase 3 located_in ISO (PMID:9001252) RGD PMID:9001252 NCBI chr10:68,215,371...68,238,705
Ensembl chr10:67,717,812...67,798,414 		JBrowse link
G Mlh1 mutL homolog 1 located_in IEA
ISO
IDA		 GO_REF:0000107
(PMID:15467367), (PMID:16260499)
PMID:16968740		 Ensembl
RGD		 PMID:15467367 PMID:16260499 PMID:16968740 GO_REF:0000107, RGD:8554354 NCBI chr 8:120,074,871...120,112,109
Ensembl chr 8:111,196,468...111,233,617 		JBrowse link
G Mlh3 mutL homolog 3 located_in ISO
IEA		 (PMID:15467367), (PMID:16260499)
GO_REF:0000107		 RGD
Ensembl		 PMID:15467367 PMID:16260499 GO_REF:0000107 NCBI chr 6:110,612,535...110,649,408
Ensembl chr 6:104,881,483...104,917,728 		JBrowse link
G Msh4 mutS homolog 4 located_in ISO
IEA		 (PMID:10809667), (PMID:16260499)
GO_REF:0000107		 RGD
Ensembl		 PMID:10809667 PMID:16260499 GO_REF:0000107 NCBI chr 2:245,445,118...245,504,493
Ensembl chr 2:242,792,661...242,843,487 		JBrowse link
G Msh5 mutS homolog 5 located_in ISO (PMID:16260499) RGD PMID:16260499 NCBI chr20:3,779,180...3,797,996
Ensembl chr20:3,776,942...3,793,336 		JBrowse link
G P3h4 prolyl 3-hydroxylase family member 4 IDA RGD PMID:1363622 RGD:633987 NCBI chr10:85,838,528...85,845,476
Ensembl chr10:85,338,161...85,345,093 		JBrowse link
G Plk1 polo-like kinase 1 located_in IEA
ISO		 GO_REF:0000107
(PMID:22854038)		 Ensembl
RGD		 PMID:22854038 GO_REF:0000107 NCBI chr 1:186,147,658...186,157,637
Ensembl chr 1:176,716,420...176,726,400 		JBrowse link
G Rec8 REC8 meiotic recombination protein located_in ISO
IEA		 (PMID:12759374)
GO_REF:0000107		 RGD
Ensembl		 PMID:12759374 GO_REF:0000107 NCBI chr15:33,079,818...33,087,283
Ensembl chr15:29,109,863...29,117,326 		JBrowse link
G Rnf212 ring finger protein 212 located_in
is_active_in		 ISO
IEA
IBA		 (PMID:23396135), (PMID:24390283)
GO_REF:0000002
GO_REF:0000033		 RGD
InterPro
GO_Central		 PMID:23396135 PMID:24390283 GO_REF:0000002 GO_REF:0000033 NCBI chr14:1,090,752...1,132,242
Ensembl chr14:949,448...987,831 		JBrowse link
G Rnf212b ring finger protein 212B located_in
is_active_in		 ISO
IEA
IBA		 (PMID:38865271)
GO_REF:0000107
GO_REF:0000002
GO_REF:0000033		 RGD
Ensembl
InterPro
GO_Central		 PMID:38865271 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr15:32,244,620...32,292,358
Ensembl chr15:28,244,083...28,321,347 		JBrowse link
G Smc1a structural maintenance of chromosomes 1A IDA MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr  X:24,582,732...24,627,462
Ensembl chr  X:21,103,282...21,148,056 		JBrowse link
G Smc1b structural maintenance of chromosomes 1B located_in ISO
IEA		 (PMID:11564881), (PMID:16968740)
GO_REF:0000107		 RGD
Ensembl		 PMID:11564881 PMID:16968740 GO_REF:0000107 NCBI chr 7:116,180,987...116,242,778
Ensembl chr 7:116,180,987...116,242,744 		JBrowse link
G Smc3 structural maintenance of chromosomes 3 IDA MMO:0000679 RGD PMID:10652260 RGD:1331378 NCBI chr 1:262,606,731...262,649,832
Ensembl chr 1:252,601,753...252,644,522 		JBrowse link
G Stag3 STAG3 cohesin complex component located_in TAS
IEA
ISO		 GO_REF:0000107
(PMID:10698974)		 Ensembl
RGD		 PMID:10698974 PMID:11599053 GO_REF:0000107, RGD:727325 NCBI chr12:22,398,291...22,428,548
Ensembl chr12:17,284,794...17,314,935 		JBrowse link
G Syce1 synaptonemal complex central element protein 1 located_in
is_active_in		 IDA
IEA
IBA		 PMID:16968740
GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 PMID:16968740 GO_REF:0000002 GO_REF:0000033, RGD:8554354 NCBI chr 1:205,281,808...205,292,811
Ensembl chr 1:195,852,172...195,863,174 		JBrowse link
G Syce1l synaptonemal complex central element protein 1-like is_active_in
located_in		 IBA
IEA		 GO_REF:0000033
GO_REF:0000002		 GO_Central
InterPro		 GO_REF:0000002 GO_REF:0000033 NCBI chr19:58,534,205...58,544,651
Ensembl chr19:41,617,180...41,635,526 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in IDA
ISO
IEA		 (PMID:12815066), (PMID:15937223), (PMID:16968740), (PMID:17696610), (PMID:18070917), (PMID:18316482), (PMID:20551173), (PMID:22011390), (PMID:25675407), (PMID:26358182), (PMID:26490168), (PMID:27473657), (PMID:27760146), (PMID:27856912), (PMID:30718482)
GO_REF:0000002		 RGD
InterPro		 PMID:12815066 PMID:15937223 PMID:16968740 PMID:17696610 PMID:18070917 More... GO_REF:0000002, RGD:9686370, RGD:8554354 NCBI chr 2:192,985,164...193,145,234
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp2 synaptonemal complex protein 2 located_in IDA
IEA
ISO		 GO_REF:0000107
(PMID:18316482), (PMID:26362258)		 Ensembl
RGD		 PMID:18316482 PMID:26362258 PMID:9592139 GO_REF:0000107, RGD:69387 NCBI chr 3:185,814,033...185,876,516
Ensembl chr 3:165,436,331...165,498,789 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in
is_active_in		 ISO
IBA		 (PMID:9774970)
(PMID:12815066), (PMID:14736746), (PMID:15657431), (PMID:16428451), (PMID:16968740), (PMID:17141210), (PMID:17696610), (PMID:17912366), (PMID:18070917), (PMID:20551173), (PMID:22854038), (PMID:23810942), (PMID:26358182), (PMID:26490168), (PMID:27473657), (PMID:27760146), (PMID:27856912), (PMID:30718482), (PMID:31839538)
GO_REF:0000033		 RGD
GO_Central		 PMID:9774970 PMID:12815066 PMID:14736746 PMID:15657431 PMID:16428451 More... GO_REF:0000033 NCBI chr 7:24,761,476...24,775,933
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
G Sycp3l1 synaptonemal complex protein 3 like 1 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:186,108,544...186,111,598
Ensembl chr 1:186,108,920...186,109,630 		JBrowse link
G Sycp3l2 synaptonemal complex protein 3 like 2 is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:133,857,772...133,871,791
Ensembl chr  X:133,857,773...133,871,714 		JBrowse link
G Syn1 synapsin I located_in ISO
IEA		 (PMID:14736746)
GO_REF:0000107		 RGD
Ensembl		 PMID:14736746 GO_REF:0000107 NCBI chr  X:3,725,745...3,780,940
Ensembl chr  X:1,172,208...1,227,396 		JBrowse link
G Tex11 testis expressed 11 located_in ISO (PMID:18369460) RGD PMID:18369460 NCBI chr  X:69,973,012...70,236,544
Ensembl chr  X:65,932,988...66,196,187 		JBrowse link
G Tex12 testis expressed 12 located_in ISO (PMID:16968740) RGD PMID:16968740 NCBI chr 8:59,804,662...59,809,595
Ensembl chr 8:50,909,052...50,913,217 		JBrowse link
G Xlr4a X-linked lymphocyte-regulated 4A is_active_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:150,916,647...150,925,201
Ensembl chr  X:150,916,932...150,929,786 		JBrowse link
transverse filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stag3 STAG3 cohesin complex component located_in ISO
IEA		 (PMID:15870106)
GO_REF:0000107		 RGD
Ensembl		 PMID:15870106 GO_REF:0000107 NCBI chr12:22,398,291...22,428,548
Ensembl chr12:17,284,794...17,314,935 		JBrowse link
G Sycp1 synaptonemal complex protein 1 located_in
is_active_in		 IDA
ISO
IBA		 (PMID:15870106), (PMID:18283110), (PMID:21539824), (PMID:22711701)
GO_REF:0000033		 RGD
GO_Central		 PMID:15870106 PMID:18283110 PMID:21539824 PMID:22711701 PMID:1464329 GO_REF:0000033, RGD:729937 NCBI chr 2:192,985,164...193,145,234
Ensembl chr 2:190,296,954...190,456,737 		JBrowse link
G Sycp3 synaptonemal complex protein 3 located_in ISO (PMID:15870106) RGD PMID:15870106 NCBI chr 7:24,761,476...24,775,933
Ensembl chr 7:22,874,055...22,888,511 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21364
    cellular anatomical structure 21069
      synaptonemal structure 47
        linear element 0
        synaptonemal complex + 47
Path 2
Term Annotations click to browse term
  cellular_component 21364
    cellular anatomical structure 21069
      organelle 14290
        intracellular organelle 13880
          intracellular membrane-bounded organelle 12307
            nucleus 7684
              nuclear lumen 4239
                nuclear chromosome 232
                  condensed nuclear chromosome 87
                    synaptonemal structure 47
                      linear element 0
                      synaptonemal complex + 47
paths to the root