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ONTOLOGY REPORT - ANNOTATIONS


Term:synaptonemal structure
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Accession:GO:0099086 term browser browse the term
Definition:A proteinaceous scaffold found between homologous chromosomes during meiosis.


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central element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Incenp inner centromere protein ISO (MGI:2653770|PMID:12584241) RGD PMID:12584241 MGI:2653770 NCBI chr 1:225,923,448...225,953,384
Ensembl chr 1:225,925,773...225,952,516
JBrowse link
G Six6os1 Six6 opposite strand transcript 1 ISO
IBA
(MGI:5822939|PMID:27796301)
PMID:21873635
RGD PMID:27796301, PMID:21873635 MGI:5822939, RGD:13792537 NCBI chr 6:95,761,718...95,797,314
Ensembl chr 6:95,762,332...95,796,502
JBrowse link
G Syce1 synaptonemal complex central element protein 1 ISO (MGI:3581466|PMID:15944401), (MGI:5315075|PMID:22164254) RGD PMID:15944401 PMID:22164254 MGI:3581466 MGI:5315075 NCBI chr 1:213,523,638...213,534,641
Ensembl chr 1:213,523,639...213,534,641
JBrowse link
G Syce2 synaptonemal complex central element protein 2 ISO
IBA
(MGI:3581466|PMID:15944401), (MGI:5315075|PMID:22164254), (MGI:5504589|PMID:22854038)
PMID:21873635
RGD PMID:15944401 PMID:22164254 PMID:22854038, PMID:21873635 MGI:3581466 MGI:5315075 MGI:5504589, RGD:13792537 NCBI chr19:25,982,003...26,002,399
Ensembl chr19:25,983,169...26,001,317
JBrowse link
G Syce3 synaptonemal complex central element protein 3 ISO
IBA
(MGI:5008660|PMID:21637789), (MGI:5315075|PMID:22164254)
PMID:21873635
RGD PMID:21637789 PMID:22164254, PMID:21873635 MGI:5008660 MGI:5315075, RGD:13792537 NCBI chr 7:130,360,511...130,386,673
Ensembl chr 7:130,360,517...130,368,819
JBrowse link
G Sycp1 synaptonemal complex protein 1 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(MGI:2653770|PMID:12584241), (MGI:5470363|PMID:23133398)
Ensembl
RGD
PMID:12584241 PMID:23133398, PMID:21873635 GO_REF:0000107 MGI:2653770 MGI:5470363, RGD:13792537 NCBI chr 2:205,274,766...205,426,869
Ensembl chr 2:205,274,769...205,426,869
JBrowse link
G Tex11 testis expressed 11 ISO
IBA
(MGI:3774244|PMID:18316482)
PMID:21873635
RGD PMID:18316482, PMID:21873635 MGI:3774244, RGD:13792537 NCBI chr  X:70,670,212...70,946,621
Ensembl chr  X:70,670,322...70,946,565
JBrowse link
G Tex12 testis expressed 12 ISO
IBA
(MGI:5315075|PMID:22164254), (MGI:5504589|PMID:22854038)
PMID:21873635
RGD PMID:22164254 PMID:22854038, PMID:21873635 MGI:5315075 MGI:5504589, RGD:13792537 NCBI chr 8:54,991,501...54,999,454
Ensembl chr 8:54,992,841...54,994,871
JBrowse link
lateral element term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07027258.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr17:21,430,337...21,484,456 JBrowse link
G Blm BLM RecQ like helicase ISO (PMID:10728666) RGD PMID:10728666 NCBI chr 1:142,246,773...142,332,616
Ensembl chr 1:142,246,790...142,332,588
JBrowse link
G Brca1 BRCA1, DNA repair associated IEA
ISO
GO_REF:0000107
(PMID:9774970)
Ensembl
RGD
PMID:9774970 GO_REF:0000107 NCBI chr10:89,394,821...89,455,093
Ensembl chr10:89,394,803...89,454,681
JBrowse link
G Brca2 BRCA2, DNA repair associated IEA
ISO
GO_REF:0000107
(PMID:9774970)
Ensembl
RGD
PMID:9774970 GO_REF:0000107 NCBI chr12:503,660...544,754
Ensembl chr12:504,007...544,748
JBrowse link
G Incenp inner centromere protein ISO (MGI:3839184|PMID:19283064) RGD PMID:19283064 MGI:3839184 NCBI chr 1:225,923,448...225,953,384
Ensembl chr 1:225,925,773...225,952,516
JBrowse link
G Kash5 KASH domain containing 5 ISO
IBA
(MGI:5515826|PMID:24062341)
PMID:21873635
RGD PMID:24062341, PMID:21873635 MGI:5515826, RGD:13792537 NCBI chr 1:101,180,497...101,203,048
Ensembl chr 1:101,180,657...101,198,801
JBrowse link
G Mei4 meiotic double-stranded break formation protein 4 ISO
IBA
(MGI:4457793|PMID:20551173)
PMID:21873635
RGD PMID:20551173, PMID:21873635 MGI:4457793, RGD:13792537 NCBI chr 8:89,369,417...89,556,942
Ensembl chr 8:89,369,417...89,556,942
JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 ISO (MGI:5288570|PMID:21743440) RGD PMID:21743440 MGI:5288570 NCBI chr 3:147,163,335...147,191,008
Ensembl chr 3:147,163,838...147,188,929
JBrowse link
G Rad51 RAD51 recombinase ISO (PMID:9774970)
(MGI:3813746|PMID:18694567), (MGI:5288570|PMID:21743440)
RGD PMID:9774970 PMID:18694567 PMID:21743440 MGI:3813746 MGI:5288570 NCBI chr 3:110,918,240...110,942,920
Ensembl chr 3:110,918,243...110,942,917
JBrowse link
G Rec8 REC8 meiotic recombination protein ISO (MGI:3578071|PMID:15870106) RGD PMID:15870106 MGI:3578071 NCBI chr15:34,296,922...34,304,387
Ensembl chr15:34,296,922...34,304,552
JBrowse link
G Rpa1 replication protein A1 ISO (MGI:5288570|PMID:21743440), (MGI:5428050|PMID:22711701) RGD PMID:21743440 PMID:22711701 MGI:5288570 MGI:5428050 NCBI chr10:62,140,419...62,191,518
Ensembl chr10:62,140,419...62,191,512
JBrowse link
G Smc1b structural maintenance of chromosomes 1B ISO (MGI:3578071|PMID:15870106), (MGI:5428050|PMID:22711701) RGD PMID:15870106 PMID:22711701 MGI:3578071 MGI:5428050 NCBI chr 7:125,966,480...126,028,287
Ensembl chr 7:125,966,480...126,028,279
JBrowse link
G Smc3 structural maintenance of chromosomes 3 IEA
ISO
GO_REF:0000107
(MGI:3578071|PMID:15870106), (MGI:5428050|PMID:22711701)
Ensembl
RGD
PMID:15870106 PMID:22711701 GO_REF:0000107 MGI:3578071 MGI:5428050 NCBI chr 1:274,310,120...274,352,856
Ensembl chr 1:274,309,758...274,352,854
JBrowse link
G Stag3 stromal antigen 3 ISO (MGI:5428050|PMID:22711701) RGD PMID:22711701 MGI:5428050 NCBI chr12:19,599,741...19,630,775
Ensembl chr12:19,599,834...19,630,780
JBrowse link
G Sycp2 synaptonemal complex protein 2 IDA
IBA
ISO
PMID:9933407
PMID:21873635
(MGI:3794139|PMID:18283110), (MGI:5314623|PMID:22011390), (MGI:5428050|PMID:22711701), (MGI:5470363|PMID:23133398)
RGD PMID:18283110 PMID:22011390 PMID:22711701 PMID:23133398, PMID:9933407, PMID:21873635 MGI:3794139 MGI:5314623 MGI:5428050 MGI:5470363, RGD:11035335, RGD:13792537 NCBI chr 3:173,884,559...173,948,304
Ensembl chr 3:173,884,287...173,947,018
JBrowse link
G Sycp2l synaptonemal complex protein 2-like ISO (MGI:5692009|PMID:26362258) RGD PMID:26362258 MGI:5692009 NCBI chr17:21,430,470...21,486,091 JBrowse link
G Sycp3 synaptonemal complex protein 3 IDA
ISO
PMID:9933407
(MGI:1352918|PMID:10678170), (MGI:3839184|PMID:19283064), (MGI:4452449|PMID:18802469), (MGI:5049827|PMID:21539824), (MGI:5288570|PMID:21743440), (MGI:5314623|PMID:22011390), (MGI:5428050|PMID:22711701), (MGI:5470363|PMID:23133398), (MGI:5477835|PMID:23555294), (MGI:5504589|PMID:22854038), (MGI:5609844|PMID:25533956), (MGI:5661094|PMID:25675407)
RGD PMID:10678170 PMID:18802469 PMID:19283064 PMID:21539824 PMID:21743440 PMID:22011390 PMID:22711701 PMID:22854038 PMID:23133398 PMID:23555294 PMID:25533956 PMID:25675407, PMID:9933407 MGI:1352918 MGI:3839184 MGI:4452449 MGI:5049827 MGI:5288570 MGI:5314623 MGI:5428050 MGI:5470363 MGI:5477835 MGI:5504589 MGI:5609844 MGI:5661094, RGD:11035335 NCBI chr 7:29,029,887...29,044,344
Ensembl chr 7:29,029,263...29,044,251
JBrowse link
synaptonemal complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnb1ip1 cyclin B1 interacting protein 1 colocalizes_with ISO (MGI:5545848|PMID:24390283) RGD PMID:24390283 MGI:5545848 NCBI chr15:27,720,220...27,736,528
Ensembl chr15:27,720,223...27,733,785
JBrowse link
G Fkbp6 FKBP prolyl isomerase family member 6 ISS
ISO
GO_REF:0000024
(MGI:2662793|PMID:12764197)
UniProt
RGD
PMID:12764197 GO_REF:0000024 MGI:2662793 NCBI chr12:24,365,941...24,438,088
Ensembl chr12:24,367,199...24,438,019
JBrowse link
G Hormad1 HORMA domain containing 1 ISO (MGI:5504589|PMID:22854038) RGD PMID:22854038 MGI:5504589 NCBI chr 2:197,681,820...197,720,197
Ensembl chr 2:197,682,000...197,719,254
JBrowse link
G Hormad2 HORMA domain containing 2 ISO (MGI:5504589|PMID:22854038) RGD PMID:22854038 MGI:5504589 NCBI chr14:84,576,856...84,662,237
Ensembl chr14:84,576,825...84,662,222
JBrowse link
G Hspa2 heat shock protein family A (Hsp70) member 2 ISO (MGI:82564|PMID:8622925) RGD PMID:8622925 MGI:82564 NCBI chr 6:99,433,575...99,436,288
Ensembl chr 6:99,433,550...99,436,289
JBrowse link
G Incenp inner centromere protein ISO (MGI:2653770|PMID:12584241) RGD PMID:12584241 MGI:2653770 NCBI chr 1:225,923,448...225,953,384
Ensembl chr 1:225,925,773...225,952,516
JBrowse link
G Lig3 DNA ligase 3 ISO (MGI:85057|PMID:9001252) RGD PMID:9001252 MGI:85057 NCBI chr10:70,134,734...70,158,051
Ensembl chr10:70,134,729...70,158,055
JBrowse link
G LOC100366231 X-linked lymphocyte-regulated 5C-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:147,060,791...147,076,946
Ensembl chr 1:146,976,975...146,989,858
Ensembl chr 1:146,976,975...146,989,858
JBrowse link
G LOC100911002 synaptonemal complex protein 3-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:146,972,526...146,989,856
Ensembl chr 1:146,976,975...146,989,858
Ensembl chr 1:146,976,975...146,989,858
JBrowse link
G LOC100911047 X-linked lymphocyte-regulated protein 3A-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:147,000,037...147,012,436
Ensembl chr 1:147,003,850...147,011,657
JBrowse link
G LOC103690322 X-linked lymphocyte-regulated protein 3A-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr  X:153,072,908...153,080,915 JBrowse link
G Mlh1 mutL homolog 1 IDA
ISO
IEA
PMID:16968740
(MGI:3056006|PMID:15467367), (MGI:3612193|PMID:16260499)
GO_REF:0000107
RGD
Ensembl
PMID:15467367 PMID:16260499, PMID:16968740 GO_REF:0000107 MGI:3056006 MGI:3612193, RGD:8554354 NCBI chr 8:119,486,655...119,523,716
Ensembl chr 8:119,486,691...119,523,964
JBrowse link
G Mlh3 mutL homolog 3 ISO (MGI:3056006|PMID:15467367), (MGI:3612193|PMID:16260499) RGD PMID:15467367 PMID:16260499 MGI:3056006 MGI:3612193 NCBI chr 6:109,059,386...109,095,876
Ensembl chr 6:109,059,341...109,095,557
JBrowse link
G Msh4 mutS homolog 4 ISO
IBA
(MGI:1858570|PMID:10809667), (MGI:3612193|PMID:16260499)
PMID:21873635
RGD PMID:10809667 PMID:16260499, PMID:21873635 MGI:1858570 MGI:3612193, RGD:13792537 NCBI chr 2:260,057,708...260,108,897
Ensembl chr 2:260,057,855...260,108,897
JBrowse link
G Msh5 mutS homolog 5 ISO (MGI:3612193|PMID:16260499) RGD PMID:16260499 MGI:3612193 NCBI chr20:5,020,690...5,037,125
Ensembl chr20:5,020,667...5,037,088
JBrowse link
G P3h4 prolyl 3-hydroxylase family member 4 IDA RGD PMID:1363622 RGD:633987 NCBI chr10:88,318,231...88,325,326
Ensembl chr10:88,318,817...88,325,326
JBrowse link
G Plk1 polo-like kinase 1 IEA
ISO
GO_REF:0000107
(MGI:5504589|PMID:22854038)
Ensembl
RGD
PMID:22854038 GO_REF:0000107 MGI:5504589 NCBI chr 1:192,115,990...192,125,969
Ensembl chr 1:192,115,966...192,125,989
JBrowse link
G Rad21 RAD21 cohesin complex component IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:91,511,755...91,538,673
Ensembl chr 7:91,511,756...91,538,673
JBrowse link
G Rad21l1 RAD21 cohesin complex component like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:147,163,335...147,191,008
Ensembl chr 3:147,163,838...147,188,929
JBrowse link
G Rec8 REC8 meiotic recombination protein ISO
IBA
(MGI:2667549|PMID:12759374)
PMID:21873635
RGD PMID:12759374, PMID:21873635 MGI:2667549, RGD:13792537 NCBI chr15:34,296,922...34,304,387
Ensembl chr15:34,296,922...34,304,552
JBrowse link
G RGD1559891 similar to synaptonemal complex protein 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:201,901,213...201,903,582
Ensembl chr 1:201,901,342...201,902,031
JBrowse link
G Rnf212 ring finger protein 212 colocalizes_with IBA
ISO
PMID:21873635
(MGI:5487470|PMID:23396135), (MGI:5545848|PMID:24390283)
RGD PMID:23396135 PMID:24390283, PMID:21873635 MGI:5487470 MGI:5545848, RGD:13792537 NCBI chr14:1,959,148...1,998,077
Ensembl chr14:1,959,610...1,998,102
JBrowse link
G Smc1b structural maintenance of chromosomes 1B ISO (MGI:2150452|PMID:11564881), (MGI:3664716|PMID:16968740) RGD PMID:11564881 PMID:16968740 MGI:2150452 MGI:3664716 NCBI chr 7:125,966,480...126,028,287
Ensembl chr 7:125,966,480...126,028,279
JBrowse link
G Stag3 stromal antigen 3 TAS
ISO
(MGI:1354041|PMID:10698974) RGD PMID:10698974, PMID:11599053 MGI:1354041, RGD:727325 NCBI chr12:19,599,741...19,630,775
Ensembl chr12:19,599,834...19,630,780
JBrowse link
G Syce1 synaptonemal complex central element protein 1 IDA
IBA
PMID:16968740
PMID:21873635
MGI
GO_Central
PMID:16968740, PMID:21873635 RGD:8554354, RGD:13792537 NCBI chr 1:213,523,638...213,534,641
Ensembl chr 1:213,523,639...213,534,641
JBrowse link
G Syce1l synaptonemal complex central element protein 1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:45,946,422...45,956,822
Ensembl chr19:45,946,236...45,956,844
JBrowse link
G Sycp1 synaptonemal complex protein 1 IDA
ISO
(MGI:2664436|PMID:12815066), (MGI:3579731|PMID:15937223), (MGI:3664716|PMID:16968740), (MGI:3719060|PMID:17696610), (MGI:3771519|PMID:18070917), (MGI:3774244|PMID:18316482), (MGI:4457793|PMID:20551173), (MGI:5314623|PMID:22011390), (MGI:5661094|PMID:25675407), (MGI:5697228|PMID:26358182), (MGI:5700253|PMID:26490168), (MGI:5805564|PMID:27760146), (MGI:5811689|PMID:27856912), (MGI:5824447|PMID:27473657) RGD PMID:12815066 PMID:15937223 PMID:16968740 PMID:17696610 PMID:18070917 PMID:18316482 PMID:20551173 PMID:22011390 PMID:25675407 PMID:26358182 PMID:26490168 PMID:27473657 PMID:27760146 PMID:27856912, PMID:8660935 MGI:2664436 MGI:3579731 MGI:3664716 MGI:3719060 MGI:3771519 MGI:3774244 MGI:4457793 MGI:5314623 MGI:5661094 MGI:5697228 MGI:5700253 MGI:5805564 MGI:5811689 MGI:5824447, RGD:9686370 NCBI chr 2:205,274,766...205,426,869
Ensembl chr 2:205,274,769...205,426,869
JBrowse link
G Sycp2 synaptonemal complex protein 2 IDA
ISO
(MGI:3774244|PMID:18316482), (MGI:5692009|PMID:26362258) RGD PMID:18316482 PMID:26362258, PMID:9592139 MGI:3774244 MGI:5692009, RGD:69387 NCBI chr 3:173,884,559...173,948,304
Ensembl chr 3:173,884,287...173,947,018
JBrowse link
G Sycp3 synaptonemal complex protein 3 ISO
IBA
(PMID:9774970)
PMID:21873635
(MGI:2664436|PMID:12815066), (MGI:3027482|PMID:14736746), (MGI:3528534|PMID:15657431), (MGI:3615835|PMID:16428451), (MGI:3664716|PMID:16968740), (MGI:3695528|PMID:17141210), (MGI:3719060|PMID:17696610), (MGI:3770581|PMID:17912366), (MGI:3771519|PMID:18070917), (MGI:4457793|PMID:20551173), (MGI:5504589|PMID:22854038), (MGI:5509253|PMID:23810942), (MGI:5697228|PMID:26358182), (MGI:5700253|PMID:26490168), (MGI:5805564|PMID:27760146), (MGI:5811689|PMID:27856912), (MGI:5824447|PMID:27473657)
RGD PMID:9774970 PMID:12815066 PMID:14736746 PMID:15657431 PMID:16428451 PMID:16968740 PMID:17141210 PMID:17696610 PMID:17912366 PMID:18070917 PMID:20551173 PMID:22854038 PMID:23810942 PMID:26358182 PMID:26490168 PMID:27473657 PMID:27760146 PMID:27856912, PMID:21873635 MGI:2664436 MGI:3027482 MGI:3528534 MGI:3615835 MGI:3664716 MGI:3695528 MGI:3719060 MGI:3770581 MGI:3771519 MGI:4457793 MGI:5504589 MGI:5509253 MGI:5697228 MGI:5700253 MGI:5805564 MGI:5811689 MGI:5824447, RGD:13792537 NCBI chr 7:29,029,887...29,044,344
Ensembl chr 7:29,029,263...29,044,251
JBrowse link
G Syn1 synapsin I ISO (MGI:3027482|PMID:14736746) RGD PMID:14736746 MGI:3027482 NCBI chr  X:1,321,315...1,379,202
Ensembl chr  X:1,321,315...1,379,198
JBrowse link
G Tex11 testis expressed 11 colocalizes_with ISO
IBA
(MGI:3797180|PMID:18369460)
PMID:21873635
RGD PMID:18369460, PMID:21873635 MGI:3797180, RGD:13792537 NCBI chr  X:70,670,212...70,946,621
Ensembl chr  X:70,670,322...70,946,565
JBrowse link
G Tex12 testis expressed 12 ISO (MGI:3664716|PMID:16968740) RGD PMID:16968740 MGI:3664716 NCBI chr 8:54,991,501...54,999,454
Ensembl chr 8:54,992,841...54,994,871
JBrowse link
G Wapl WAPL cohesin release factor ISO (MGI:3525912|PMID:15620708) RGD PMID:15620708 MGI:3525912 NCBI chr16:11,029,325...11,108,867
Ensembl chr16:11,032,531...11,106,589
JBrowse link
G Xlr3a X-linked lymphocyte-regulated 3A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:147,033,269...147,050,622
Ensembl chr 1:147,034,668...147,046,809
JBrowse link
G Xlr4a X-linked lymphocyte-regulated 4A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:153,072,965...153,081,324
Ensembl chr  X:153,072,908...153,080,915
JBrowse link
transverse filament term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stag3 stromal antigen 3 ISO (MGI:3578071|PMID:15870106) RGD PMID:15870106 MGI:3578071 NCBI chr12:19,599,741...19,630,775
Ensembl chr12:19,599,834...19,630,780
JBrowse link
G Sycp1 synaptonemal complex protein 1 IDA
IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(MGI:3578071|PMID:15870106), (MGI:3794139|PMID:18283110), (MGI:5049827|PMID:21539824), (MGI:5428050|PMID:22711701)
Ensembl
RGD
PMID:15870106 PMID:18283110 PMID:21539824 PMID:22711701, PMID:1464329, PMID:21873635 GO_REF:0000107 MGI:3578071 MGI:3794139 MGI:5049827 MGI:5428050, RGD:729937, RGD:13792537 NCBI chr 2:205,274,766...205,426,869
Ensembl chr 2:205,274,769...205,426,869
JBrowse link
G Sycp3 synaptonemal complex protein 3 ISO (MGI:3578071|PMID:15870106) RGD PMID:15870106 MGI:3578071 NCBI chr 7:29,029,887...29,044,344
Ensembl chr 7:29,029,263...29,044,251
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20615
    cellular anatomical entity 20304
      synaptonemal structure 48
        linear element 0
        synaptonemal complex + 48
Path 2
Term Annotations click to browse term
  cellular_component 20615
    cellular anatomical entity 20304
      organelle 13278
        membrane-bounded organelle 11263
          intracellular membrane-bounded organelle 10518
            nucleus 6987
              nuclear lumen 3830
                nuclear chromosome 246
                  condensed nuclear chromosome 96
                    synaptonemal structure 48
                      linear element 0
                      synaptonemal complex + 48
paths to the root