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ONTOLOGY REPORT - ANNOTATIONS


Term:cell aggregation
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Accession:GO:0098743 term browser browse the term
Definition:The clustering together and adhesion of initially separate cells to form an aggregate. Examples include the clustering of unicellular organisms or blood cells in suspension and the condensation of mesenchymal cells during cartilage formation.



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cell aggregation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MPZ myelin protein zero involved_in IMP (PMID:18337304) UniProt
UniProt
PMID:18337304 NCBI chr 1:161,303,594...161,309,969
Ensembl chr 1:161,304,735...161,309,968
JBrowse link
cartilage condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAN aggrecan involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2664273|PMID:3070812) Ensembl
Ensembl
MGI
PMID:3070812 GO_REF:0000107 MGI:2664273 NCBI chr15:88,803,436...88,875,353
Ensembl chr15:88,803,436...88,875,353
JBrowse link
G BARX2 BARX homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3578585|PMID:15800003) Ensembl
Ensembl
MGI
PMID:15800003 GO_REF:0000107 MGI:3578585 NCBI chr11:129,375,237...129,452,279
Ensembl chr11:129,375,848...129,452,279
JBrowse link
G BMP1 bone morphogenetic protein 1 involved_in TAS (PMID:3201241) PINC
PINC
PMID:3201241 NCBI chr 8:22,165,372...22,212,326
Ensembl chr 8:22,165,140...22,212,326
JBrowse link
G BMPR1B bone morphogenetic protein receptor type 1B acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1351297|PMID:10631181) MGI
Ensembl
Ensembl
PMID:10631181 GO_REF:0000107 MGI:1351297 NCBI chr 4:94,757,955...95,158,453
Ensembl chr 4:94,757,955...95,158,448
JBrowse link
G CCN2 cellular communication network factor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3050271|PMID:15305294) Ensembl
Ensembl
MGI
PMID:15305294 GO_REF:0000107 MGI:3050271 NCBI chr 6:131,948,176...131,951,372
Ensembl chr 6:131,948,176...131,951,372
JBrowse link
G CHAD chondroadherin ISO RGD PMID:9461555 RGD:69806 NCBI chr17:50,464,492...50,469,881
Ensembl chr17:50,464,496...50,468,906
JBrowse link
G COL11A1 collagen type XI alpha 1 chain involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2664273|PMID:3070812) Ensembl
Ensembl
MGI
PMID:3070812 GO_REF:0000107 MGI:2664273 NCBI chr 1:102,876,473...103,108,580
Ensembl chr 1:102,876,467...103,108,872
JBrowse link
G COL2A1 collagen type II alpha 1 chain involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2664273|PMID:3070812) Ensembl
Ensembl
MGI
PMID:3070812 GO_REF:0000107 MGI:2664273 NCBI chr12:47,972,967...48,006,212
Ensembl chr12:47,972,967...48,004,554
JBrowse link
G FGF4 fibroblast growth factor 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:78390|PMID:8565825) Ensembl
Ensembl
MGI
PMID:8565825 GO_REF:0000107 MGI:78390 NCBI chr11:69,771,022...69,775,341
Ensembl chr11:69,771,022...69,775,341
JBrowse link
G FGF6 fibroblast growth factor 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:78390|PMID:8565825) Ensembl
Ensembl
MGI
PMID:8565825 GO_REF:0000107 MGI:78390 NCBI chr12:4,434,142...4,445,815
Ensembl chr12:4,428,155...4,445,815
JBrowse link
G MAPK14 mitogen-activated protein kinase 14 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:36,027,711...36,122,964
Ensembl chr 6:36,027,677...36,111,236
JBrowse link
G MGP matrix Gla protein involved_in TAS (PMID:9916809) PINC
PINC
PMID:9916809 NCBI chr12:14,880,864...14,885,854
Ensembl chr12:14,880,864...14,885,857
JBrowse link
G MYCN MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (MGI:3790402|PMID:17360777) MGI PMID:17360777 MGI:3790402 NCBI chr 2:15,940,550...15,947,004
Ensembl chr 2:15,940,550...15,947,007
JBrowse link
G MYF5 myogenic factor 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:78390|PMID:8565825) Ensembl
Ensembl
MGI
PMID:8565825 GO_REF:0000107 MGI:78390 NCBI chr12:80,716,912...80,719,671
Ensembl chr12:80,716,912...80,719,671
JBrowse link
G OTOR otoraplin involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
(PMID:21873635)
(MGI:1928405|PMID:10998416)
GO_Central
Ensembl
GO_Central
MGI
PMID:10998416 PMID:21873635 GO_REF:0000107 MGI:1928405 NCBI chr20:16,748,358...16,752,164
Ensembl chr20:16,748,358...16,770,062
JBrowse link
G PKD1 polycystin 1, transient receptor potential channel interacting involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2152028|PMID:11593033) Ensembl
Ensembl
MGI
PMID:11593033 GO_REF:0000107 MGI:2152028 NCBI chr16:2,088,708...2,135,898
Ensembl chr16:2,088,708...2,135,898
JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3037488|PMID:14745966) Ensembl
Ensembl
MGI
PMID:14745966 GO_REF:0000107 MGI:3037488 NCBI chr 9:91,722,598...91,950,228
Ensembl chr 9:91,563,091...91,950,228
JBrowse link
G SOX5 SRY-box transcription factor 5 involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr12:23,529,499...24,562,701
Ensembl chr12:23,529,504...24,562,544
JBrowse link
G SOX6 SRY-box transcription factor 6 involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr11:15,966,449...16,738,477
Ensembl chr11:15,966,449...16,739,591
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISS
IEA
ISO
(MGI:2389523|PMID:12414734)
(MGI:2159578|PMID:10319868)
UniProt
Ensembl
UniProt
MGI
PMID:10319868 PMID:12414734 GO_REF:0000024 GO_REF:0000107 MGI:2159578 MGI:2389523 NCBI chr17:72,121,020...72,126,416
Ensembl chr17:72,121,020...72,126,416
JBrowse link
G TGFB2 transforming growth factor beta 2 acts_upstream_of_or_within ISO (MGI:78390|PMID:8565825) MGI PMID:8565825 MGI:78390 NCBI chr 1:218,345,336...218,444,619
Ensembl chr 1:218,345,336...218,444,619
JBrowse link
G THRA thyroid hormone receptor alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:894529|PMID:9250685) Ensembl
Ensembl
MGI
PMID:9250685 GO_REF:0000107 MGI:894529 NCBI chr17:40,062,193...40,093,867
Ensembl chr17:40,058,290...40,093,867
JBrowse link
G UNCX UNC homeobox involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1855902|PMID:10804168)
(MGI:1855901|PMID:10804169)
Ensembl
Ensembl
MGI
PMID:10804168 PMID:10804169 GO_REF:0000107 MGI:1855901 MGI:1855902 NCBI chr 7:1,232,872...1,237,326
Ensembl chr 7:1,232,872...1,237,326
JBrowse link
G WNT7A Wnt family member 7A involved_in IDA (PMID:17202865) AgBase
AgBase
PMID:17202865 NCBI chr 3:13,816,258...13,880,071
Ensembl chr 3:13,816,258...13,880,071
JBrowse link
negative regulation of single-species biofilm formation in or on host organism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BPIFA1 BPI fold containing family A member 1 involved_in IMP
IBA
(PMID:23499554)
(PMID:21873635)
UniProt
UniProt
GO_Central
GO_Central
PMID:21873635 PMID:23499554 NCBI chr20:33,235,996...33,243,306
Ensembl chr20:33,235,995...33,243,311
JBrowse link
G LTF lactotransferrin involved_in IDA (PMID:12037568) UniProt
UniProt
PMID:12037568 NCBI chr 3:46,435,645...46,485,234
Ensembl chr 3:46,435,645...46,485,234
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18661
    cellular process 17546
      cell aggregation 27
        aggregation of unicellular organisms + 2
        cartilage condensation + 24
paths to the root