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ONTOLOGY REPORT - ANNOTATIONS

Term:cell aggregation
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Accession:GO:0098743 term browser browse the term
Definition:The clustering together and adhesion of initially separate cells to form an aggregate. Examples include the clustering of unicellular organisms or blood cells in suspension and the condensation of mesenchymal cells during cartilage formation.

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cell aggregation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mpz myelin protein zero involved_in ISO (PMID:18337304) UniProt PMID:18337304 NCBI chrNW_004955468:13,041,911...13,047,026
Ensembl chrNW_004955468:13,041,011...13,047,284 		JBrowse link
G Tmigd1 transmembrane and immunoglobulin domain containing 1 acts_upstream_of_or_within ISO (PMID:26342724) MGI PMID:26342724 NCBI chrNW_004955481:2,977,245...3,009,724
Ensembl chrNW_004955481:2,995,922...3,013,408 		JBrowse link
cartilage condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan acts_upstream_of_or_within ISO (PMID:3070812) MGI PMID:3070812 NCBI chrNW_004955416:16,125,536...16,186,046 JBrowse link
G Barx2 BARX homeobox 2 acts_upstream_of_or_within ISO (PMID:15800003) MGI PMID:15800003 NCBI chrNW_004955412:30,345,837...30,418,186
Ensembl chrNW_004955412:30,345,311...30,418,232 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO (PMID:10631181) MGI PMID:10631181 NCBI chrNW_004955405:5,408,171...5,784,930
Ensembl chrNW_004955405:5,700,162...5,787,957 		JBrowse link
G Ccn2 cellular communication network factor 2 acts_upstream_of_or_within ISO (PMID:15305294) MGI PMID:15305294 NCBI chrNW_004955436:12,523,602...12,526,986
Ensembl chrNW_004955436:12,522,944...12,526,480 		JBrowse link
G Chad chondroadherin ISO RGD PMID:9461555 RGD:69806 NCBI chrNW_004955451:11,285,822...11,289,644
Ensembl chrNW_004955451:11,285,822...11,289,644 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO (PMID:3070812) MGI PMID:3070812 NCBI chrNW_004955435:7,352,617...7,545,235
Ensembl chrNW_004955435:7,352,617...7,545,235 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within ISO (PMID:3070812) MGI PMID:3070812 NCBI chrNW_004955500:6,860,771...6,885,466
Ensembl chrNW_004955500:6,860,771...6,885,473 		JBrowse link
G Fgf4 fibroblast growth factor 4 acts_upstream_of_or_within ISO (PMID:8565825) MGI PMID:8565825 NCBI chrNW_004955422:16,362,418...16,364,126 JBrowse link
G Fgf6 fibroblast growth factor 6 acts_upstream_of_or_within ISO (PMID:8565825) MGI PMID:8565825 NCBI chrNW_004955413:2,246,965...2,257,883
Ensembl chrNW_004955413:2,246,965...2,257,883 		JBrowse link
G Mapk14 mitogen-activated protein kinase 14 involved_in ISO (MGI:5487758|PMID:17202865) AgBase PMID:17202865 MGI:5487758 NCBI chrNW_004955437:3,836,331...3,884,083
Ensembl chrNW_004955437:3,838,232...3,884,083 		JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (PMID:17360777) MGI PMID:17360777 NCBI chrNW_004955487:9,219,528...9,224,818
Ensembl chrNW_004955487:9,219,528...9,224,818 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO (PMID:8565825) MGI PMID:8565825 NCBI chrNW_004955405:19,345,943...19,348,453
Ensembl chrNW_004955405:19,345,943...19,348,453 		JBrowse link
G Otor otoraplin acts_upstream_of_or_within ISO (PMID:10998416) MGI PMID:10998416 NCBI chrNW_004955415:25,897,320...25,901,059
Ensembl chrNW_004955415:25,897,320...25,901,059 		JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO (PMID:11593033) MGI PMID:11593033 NCBI chrNW_004955442:15,132,555...15,178,377
Ensembl chrNW_004955442:15,145,640...15,178,377 		JBrowse link
G Ror2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:14745966) MGI PMID:14745966 NCBI chrNW_004955515:313,612...554,751
Ensembl chrNW_004955515:313,604...553,774 		JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in ISO (MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235) UniProt PMID:11702786 PMID:14993235 MGI:2446758 MGI:3037234 NCBI chrNW_004955413:18,831,931...19,676,371
Ensembl chrNW_004955413:18,831,931...19,204,217 		JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISO (MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235) UniProt PMID:11702786 PMID:14993235 MGI:2446758 MGI:3037234 NCBI chrNW_004955414:30,965,626...31,532,473
Ensembl chrNW_004955414:30,971,920...31,335,263 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:10319868)
(PMID:12414734)		 MGI PMID:10319868 PMID:12414734 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563 		JBrowse link
G Tgfb2 transforming growth factor beta 2 acts_upstream_of_or_within ISO (PMID:8565825) MGI PMID:8565825 NCBI chrNW_004955406:174,949...249,248
Ensembl chrNW_004955406:172,814...249,248 		JBrowse link
G Thra thyroid hormone receptor alpha acts_upstream_of_or_within ISO (PMID:9250685) MGI PMID:9250685 NCBI chrNW_004955451:14,731,746...14,743,545
Ensembl chrNW_004955451:14,731,746...14,744,367 		JBrowse link
G Uncx UNC homeobox acts_upstream_of_or_within ISO (PMID:10804168)
(PMID:10804169)		 MGI PMID:10804168 PMID:10804169 NCBI chrNW_004955460:8,941,629...8,945,761 JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:17202865) AgBase PMID:17202865 NCBI chrNW_004955429:12,647,993...12,693,998
Ensembl chrNW_004955429:12,647,993...12,694,895 		JBrowse link
negative regulation of single-species biofilm formation in or on host organism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bpifa1 BPI fold containing family A member 1 involved_in ISO (PMID:23499554)
(MGI:5484728|PMID:23499554)		 UniProt PMID:23499554 MGI:5484728 NCBI chrNW_004955422:28,063,077...28,069,939 JBrowse link
G Ltf lactotransferrin involved_in ISO (PMID:12037568) UniProt PMID:12037568 NCBI chrNW_004955420:25,580,449...25,604,277
Ensembl chrNW_004955420:25,580,359...25,604,331 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12346
    cellular process 11480
      cell aggregation 26
        aggregation of unicellular organisms + 2
        cartilage condensation + 22
paths to the root