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ONTOLOGY REPORT - ANNOTATIONS


Term:cell aggregation
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Accession:GO:0098743 term browser browse the term
Definition:The clustering together and adhesion of initially separate cells to form an aggregate. Examples include the clustering of unicellular organisms or blood cells in suspension and the condensation of mesenchymal cells during cartilage formation.



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cell aggregation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mpz myelin protein zero involved_in ISO
ISS
(PMID:18337304)
GO_REF:0000024
RGD
UniProt
PMID:18337304 GO_REF:0000024 NCBI chr13:83,570,811...83,576,680
Ensembl chr13:83,570,811...83,576,679
JBrowse link
cartilage condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856465 (MGI:2664273|PMID:3070812)
Ensembl
RGD
PMID:3070812 GO_REF:0000107 MGI:2664273 NCBI chr 1:132,981,034...133,044,416
Ensembl chr 1:132,981,582...133,043,627
JBrowse link
G Barx2 BARX homeobox 2 acts_upstream_of_or_within ISO (MGI:3578585|PMID:15800003) RGD PMID:15800003 MGI:3578585 NCBI chr 8:30,251,132...30,319,105
Ensembl chr 8:30,251,132...30,319,013
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO MGI:2158498 (MGI:1351297|PMID:10631181) RGD PMID:10631181 MGI:1351297 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368
JBrowse link
G Ccn2 cellular communication network factor 2 acts_upstream_of_or_within ISO (MGI:3050271|PMID:15305294) RGD PMID:15305294 MGI:3050271 NCBI chr 1:20,802,199...20,805,315
Ensembl chr 1:20,802,199...20,805,734
JBrowse link
G Chad chondroadherin IEP RGD PMID:9461555 RGD:69806 NCBI chr10:79,512,170...79,515,941
Ensembl chr10:79,511,931...79,515,940
JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (MGI:2664273|PMID:3070812) RGD PMID:3070812 MGI:2664273 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853
JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857275 (MGI:2664273|PMID:3070812)
Ensembl
RGD
PMID:3070812 GO_REF:0000107 MGI:2664273 NCBI chr 7:129,098,489...129,127,620
Ensembl chr 7:129,098,786...129,127,546
JBrowse link
G Fgf4 fibroblast growth factor 4 acts_upstream_of_or_within ISO MGI:98726 (MGI:78390|PMID:8565825) RGD PMID:8565825 MGI:78390 NCBI chr 1:200,023,937...200,027,793
Ensembl chr 1:200,024,056...200,025,466
JBrowse link
G Fgf6 fibroblast growth factor 6 acts_upstream_of_or_within ISO MGI:98726 (MGI:78390|PMID:8565825) RGD PMID:8565825 MGI:78390 NCBI chr 4:159,854,913...159,863,447
Ensembl chr 4:159,854,913...159,863,447
JBrowse link
G Mapk14 mitogen activated protein kinase 14 involved_in IEA
ISO
GO_REF:0000107
(MGI:5487758|PMID:17202865)
Ensembl
RGD
PMID:17202865 GO_REF:0000107 MGI:5487758 NCBI chr20:6,749,646...6,810,590
Ensembl chr20:6,749,670...6,810,589
JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3790402|PMID:17360777)
Ensembl
RGD
PMID:17360777 GO_REF:0000107 MGI:3790402 NCBI chr 6:35,717,764...35,723,590
Ensembl chr 6:35,717,764...35,723,590
JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO MGI:1857219 (MGI:78390|PMID:8565825) RGD PMID:8565825 MGI:78390 NCBI chr 7:42,802,946...42,806,177
Ensembl chr 7:42,802,946...42,806,177
JBrowse link
G Otor otoraplin involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:1928405|PMID:10998416)
RGD PMID:10998416 PMID:21873635 MGI:1928405, RGD:13792537 NCBI chr 3:130,415,339...130,418,601
Ensembl chr 3:130,415,339...130,418,601
JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO MGI:2152589 (MGI:2152028|PMID:11593033) RGD PMID:11593033 MGI:2152028 NCBI chr10:13,573,779...13,621,138
Ensembl chr10:13,573,021...13,621,128
JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2183225 (MGI:3037488|PMID:14745966) RGD PMID:14745966 MGI:3037488 NCBI chr17:11,972,830...12,148,152
Ensembl chr17:11,972,830...12,148,152
JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in ISS
ISO
GO_REF:0000024
(MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235)
UniProt
RGD
PMID:11702786 PMID:14993235 GO_REF:0000024 MGI:2446758 MGI:3037234 NCBI chr 4:176,781,375...177,736,833
Ensembl chr 4:176,785,892...177,736,852
JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISS
ISO
GO_REF:0000024
(MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235)
UniProt
RGD
PMID:11702786 PMID:14993235 GO_REF:0000024 MGI:2446758 MGI:3037234 NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2158693|MGI:2385468 (MGI:2159578|PMID:10319868), (MGI:2389523|PMID:12414734)
UniProt
RGD
PMID:10319868 PMID:12414734 GO_REF:0000024 MGI:2159578 MGI:2389523 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Sulf1 sulfatase 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:6,362,896...6,526,174
Ensembl chr 5:6,362,911...6,525,584
JBrowse link
G Tgfb2 transforming growth factor, beta 2 acts_upstream_of_or_within ISO MGI:95518|MGI:95520 (MGI:78390|PMID:8565825) RGD PMID:8565825 MGI:78390 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
JBrowse link
G Thra thyroid hormone receptor alpha involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1860442 (MGI:894529|PMID:9250685)
Ensembl
RGD
PMID:9250685 GO_REF:0000107 MGI:894529 NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936
JBrowse link
G Uncx UNC homeobox involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1859373|MGI:1928812 (MGI:1855901|PMID:10804169), (MGI:1855902|PMID:10804168)
Ensembl
RGD
PMID:10804168 PMID:10804169 GO_REF:0000107 MGI:1855901 MGI:1855902 NCBI chr12:15,092,779...15,097,300
Ensembl chr12:15,092,784...15,097,300
JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO (PMID:17202865) RGD PMID:17202865 NCBI chr 4:123,863,108...123,908,981
Ensembl chr 4:123,863,108...123,908,981
JBrowse link
negative regulation of single-species biofilm formation in or on host organism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bpifa1 BPI fold containing family A, member 1 involved_in ISS
ISO
IBA
GO_REF:0000024
(MGI:5484728|PMID:23499554)
PMID:21873635
(PMID:23499554)
UniProt
RGD
PMID:23499554 PMID:21873635 GO_REF:0000024 MGI:5484728, RGD:13792537 NCBI chr 3:142,627,810...142,633,553
Ensembl chr 3:142,627,810...142,633,552
JBrowse link
G Bpifa5 BPI fold containing family A, member 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:142,646,103...142,652,884
Ensembl chr 3:142,646,103...142,652,883
JBrowse link
G Ltf lactotransferrin involved_in ISO (PMID:12037568) RGD PMID:12037568 NCBI chr 8:110,999,948...111,022,795
Ensembl chr 8:110,999,948...111,022,795
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19497
    cellular process 18359
      cell aggregation 27
        aggregation of unicellular organisms + 3
        cartilage condensation + 23
paths to the root