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ONTOLOGY REPORT - ANNOTATIONS

Term:cell aggregation
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Accession:GO:0098743 term browser browse the term
Definition:The clustering together and adhesion of initially separate cells to form an aggregate. Examples include the clustering of unicellular organisms or blood cells in suspension and the condensation of mesenchymal cells during cartilage formation.


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cell aggregation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mpz myelin protein zero involved_in ISO
ISS
IEA 		(PMID:18337304)
GO_REF:0000024
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:18337304 GO_REF:0000024 GO_REF:0000107 NCBI chr13:83,570,811...83,576,680
Ensembl chr13:83,570,811...83,576,679 		JBrowse link
G Tmigd1 transmembrane and immunoglobulin domain containing 1 acts_upstream_of_or_within ISO
IEA 		(PMID:26342724)
GO_REF:0000107 		RGD
Ensembl		 PMID:26342724 GO_REF:0000107 NCBI chr10:61,739,071...61,751,025
Ensembl chr10:61,736,462...61,751,025 		JBrowse link
cartilage condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan acts_upstream_of_or_within ISO
IEA 		MGI:1856465 (PMID:3070812)
GO_REF:0000107 		RGD
Ensembl		 PMID:3070812 GO_REF:0000107 NCBI chr 1:132,981,582...133,044,416
Ensembl chr 1:132,981,582...133,043,627 		JBrowse link
G Barx2 BARX homeobox 2 acts_upstream_of_or_within ISO
IEA 		(PMID:15800003)
GO_REF:0000107 		RGD
Ensembl		 PMID:15800003 GO_REF:0000107 NCBI chr 8:30,251,132...30,319,105
Ensembl chr 8:30,251,132...30,319,013 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO
IEA 		MGI:2158498 (PMID:10631181)
GO_REF:0000107 		RGD
Ensembl		 PMID:10631181 GO_REF:0000107 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368 		JBrowse link
G Ccn2 cellular communication network factor 2 acts_upstream_of_or_within ISO (PMID:15305294) RGD PMID:15305294 NCBI chr 1:20,802,199...20,805,315
Ensembl chr 1:20,802,199...20,805,734 		JBrowse link
G Chad chondroadherin IEP RGD PMID:9461555 RGD:69806 NCBI chr10:79,512,170...79,515,941
Ensembl chr10:79,511,931...79,515,940 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (PMID:3070812) RGD PMID:3070812 NCBI chr 2:201,820,715...202,013,853
Ensembl chr 2:201,820,715...202,013,853 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within ISO
IEA 		MGI:1857275 (PMID:3070812)
GO_REF:0000107 		RGD
Ensembl		 PMID:3070812 GO_REF:0000107 NCBI chr 7:129,098,489...129,127,560
Ensembl chr 7:129,098,786...129,127,546 		JBrowse link
G Fgf4 fibroblast growth factor 4 acts_upstream_of_or_within ISO
IEA 		MGI:98726 (PMID:8565825)
GO_REF:0000107 		RGD
Ensembl		 PMID:8565825 GO_REF:0000107 NCBI chr 1:200,023,937...200,027,793
Ensembl chr 1:200,024,056...200,025,466 		JBrowse link
G Fgf6 fibroblast growth factor 6 acts_upstream_of_or_within ISO
IEA 		MGI:98726 (PMID:8565825)
GO_REF:0000107 		RGD
Ensembl		 PMID:8565825 GO_REF:0000107 NCBI chr 4:159,854,913...159,863,447
Ensembl chr 4:159,854,913...159,863,447 		JBrowse link
G Mapk14 mitogen activated protein kinase 14 involved_in IEA
ISO 		GO_REF:0000107
(PMID:17202865) 		Ensembl
RGD		 PMID:17202865 GO_REF:0000107 NCBI chr20:6,749,646...6,810,590
Ensembl chr20:6,749,670...6,810,589 		JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO
IEA 		(PMID:17360777)
GO_REF:0000107 		RGD
Ensembl		 PMID:17360777 GO_REF:0000107 NCBI chr 6:35,717,764...35,723,590
Ensembl chr 6:35,717,764...35,723,590 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO
IEA 		MGI:1857219 (PMID:8565825)
GO_REF:0000107 		RGD
Ensembl		 PMID:8565825 GO_REF:0000107 NCBI chr 7:42,802,946...42,806,177
Ensembl chr 7:42,802,946...42,806,177 		JBrowse link
G Otor otoraplin involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
(PMID:10998416) 		GO_Central
Ensembl
RGD		 PMID:10998416 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:130,415,339...130,418,601
Ensembl chr 3:130,415,339...130,418,601 		JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO
IEA 		MGI:2152589 (PMID:11593033)
GO_REF:0000107 		RGD
Ensembl		 PMID:11593033 GO_REF:0000107 NCBI chr10:13,573,779...13,621,138
Ensembl chr10:13,573,021...13,621,128 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2183225 (PMID:14745966) RGD PMID:14745966 NCBI chr17:11,972,830...12,148,152
Ensembl chr17:11,972,830...12,148,152 		JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in ISS
ISO 		GO_REF:0000024
(PMID:11702786), (PMID:14993235) 		UniProt
RGD		 PMID:11702786 PMID:14993235 GO_REF:0000024 NCBI chr 4:176,781,375...177,736,833
Ensembl chr 4:176,785,892...177,736,852 		JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISS
ISO 		GO_REF:0000024
(PMID:11702786), (PMID:14993235) 		UniProt
RGD		 PMID:11702786 PMID:14993235 GO_REF:0000024 NCBI chr 1:169,723,306...170,334,846
Ensembl chr 1:169,729,194...170,277,386 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:2158693|MGI:2385468 (PMID:10319868), (PMID:12414734) 		UniProt
Ensembl
RGD		 PMID:10319868 PMID:12414734 GO_REF:0000024 GO_REF:0000107 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Sulf1 sulfatase 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:6,362,894...6,526,174
Ensembl chr 5:6,362,911...6,525,584 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 acts_upstream_of_or_within ISO
IEA 		MGI:95518|MGI:95520 (PMID:8565825)
GO_REF:0000107 		RGD
Ensembl		 PMID:8565825 GO_REF:0000107 NCBI chr13:100,691,540...100,793,227
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
G Thra thyroid hormone receptor alpha acts_upstream_of_or_within ISO MGI:1860442 (PMID:9250685) RGD PMID:9250685 NCBI chr10:83,701,885...83,729,408
Ensembl chr10:83,700,755...83,729,936 		JBrowse link
G Uncx UNC homeobox acts_upstream_of_or_within ISO
IEA 		MGI:1859373|MGI:1928812 (PMID:10804168), (PMID:10804169)
GO_REF:0000107 		RGD
Ensembl		 PMID:10804168 PMID:10804169 GO_REF:0000107 NCBI chr12:15,092,779...15,097,300
Ensembl chr12:15,092,784...15,097,300 		JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO
IEA 		(PMID:17202865)
GO_REF:0000107 		RGD
Ensembl		 PMID:17202865 GO_REF:0000107 NCBI chr 4:125,420,276...125,466,149
Ensembl chr 4:123,863,108...123,908,981 		JBrowse link
negative regulation of single-species biofilm formation in or on host organism term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bpifa1 BPI fold containing family A, member 1 involved_in ISS
ISO
IBA 		GO_REF:0000024
(PMID:23499554)
GO_REF:0000033 		UniProt
RGD
GO_Central		 PMID:23499554 GO_REF:0000024 GO_REF:0000033 NCBI chr 3:142,627,810...142,633,553
Ensembl chr 3:142,627,810...142,633,552 		JBrowse link
G Bpifa5 BPI fold containing family A, member 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:142,646,103...142,652,884
Ensembl chr 3:142,646,103...142,652,883 		JBrowse link
G Ltf lactotransferrin involved_in ISO (PMID:12037568) RGD PMID:12037568 NCBI chr 8:110,999,948...111,022,795
Ensembl chr 8:110,999,948...111,022,795 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    cellular process 19534
      cell aggregation 28
        aggregation of unicellular organisms + 3
        cartilage condensation + 23
paths to the root