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ONTOLOGY REPORT - ANNOTATIONS

Term:postsynaptic specialization assembly
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Accession:GO:0098698 term browser browse the term
Definition:The aggregation, arrangement and bonding together of a set of components to form a postsynaptic specialization, a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane.

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postsynaptic specialization assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crk CRK proto-oncogene, adaptor protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:7,581,453...7,609,543
Ensembl chrNW_004936538:7,581,498...7,609,544 		JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936619:2,447,686...2,479,589
Ensembl chrNW_004936619:2,447,614...2,479,805 		JBrowse link
G Dock7 dedicator of cytokinesis 7 involved_in ISO (PMID:21041412) SynGO PMID:21041412 NCBI chrNW_004936692:161,979...354,028
Ensembl chrNW_004936692:162,390...353,721 		JBrowse link
G Nlgn1 neuroligin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936703:951,935...1,415,991
Ensembl chrNW_004936703:758,647...1,414,185 		JBrowse link
G Nlgn2 neuroligin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936595:692,340...704,650
Ensembl chrNW_004936595:692,334...704,602 		JBrowse link
G Nlgn3 neuroligin 3 involved_in ISO PMID:17897391 SynGO PMID:17897391 RGD:9831151 NCBI chrNW_004936762:435,729...458,261
Ensembl chrNW_004936762:435,729...458,423 		JBrowse link
G Ntng2 netrin G2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:18,779,470...18,838,245
Ensembl chrNW_004936487:18,783,058...18,837,481 		JBrowse link
gephyrin clustering involved in postsynaptic density assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nlgn2 neuroligin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29107521) Ensembl
MGI		 PMID:29107521 GO_REF:0000107 NCBI chrNW_004936595:692,340...704,650
Ensembl chrNW_004936595:692,334...704,602 		JBrowse link
G Nrxn1 neurexin 1 involved_in ISO (MGI:5284797|PMID:15620359), (MGI:5285129|PMID:21424692) BHF-UCL PMID:15620359 PMID:21424692 MGI:5284797 MGI:5285129 NCBI chrNW_004936508:1,889,640...2,954,039 JBrowse link
G Nrxn2 neurexin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:4,592,411...4,692,866
Ensembl chrNW_004936599:4,592,405...4,690,516 		JBrowse link
G Slitrk3 SLIT and NTRK like family member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29107521) Ensembl
MGI		 PMID:29107521 GO_REF:0000107 NCBI chrNW_004936707:1,315,267...1,324,793
Ensembl chrNW_004936707:1,315,267...1,324,026 		JBrowse link
G Zdhhc12 zinc finger DHHC-type palmitoyltransferase 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:16,201,288...16,203,818
Ensembl chrNW_004936487:16,199,742...16,203,858 		JBrowse link
postsynaptic density assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1ql2 complement C1q like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936469:51,198,074...51,200,751
Ensembl chrNW_004936469:51,198,719...51,201,308 		JBrowse link
G C1ql3 complement C1q like 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936520:10,656,437...10,665,067
Ensembl chrNW_004936520:10,656,432...10,666,413 		JBrowse link
G Csmd2 CUB and Sushi multiple domains 2 involved_in ISO (PMID:31068362) SynGO PMID:31068362 NCBI chrNW_004936474:16,323,899...16,607,712
Ensembl chrNW_004936474:16,326,666...16,866,720 		JBrowse link
G Nptx1 neuronal pentraxin 1 involved_in ISO PMID:29024665 SynGO PMID:29024665 RGD:13702141 NCBI chrNW_004936594:4,373,500...4,384,394
Ensembl chrNW_004936594:4,373,473...4,384,461 		JBrowse link
G Nrxn3 neurexin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936488:6,920,133...8,466,316
Ensembl chrNW_004936488:6,985,998...8,466,466 		JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 involved_in ISO PMID:21262467 SynGO PMID:21262467 RGD:13702219 NCBI chrNW_004936483:13,912,904...14,291,881
Ensembl chrNW_004936483:13,909,109...14,291,887 		JBrowse link
G Pten phosphatase and tensin homolog involved_in ISO (MGI:3772418|PMID:18082964) CACAO PMID:18082964 MGI:3772418 NCBI chrNW_004936735:1,252,414...1,338,318
Ensembl chrNW_004936735:1,252,414...1,338,323 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936629:114,175...168,697
Ensembl chrNW_004936629:114,850...167,505 		JBrowse link
G Slitrk3 SLIT and NTRK like family member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29107521) Ensembl
MGI		 PMID:29107521 GO_REF:0000107 NCBI chrNW_004936707:1,315,267...1,324,793
Ensembl chrNW_004936707:1,315,267...1,324,026 		JBrowse link
regulation of postsynaptic density assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi3bp ABI family member 3 binding protein involved_in ISO PMID:22485184 ARUK-UCL PMID:22485184 RGD:42721990 NCBI chrNW_004936630:2,286,089...2,518,588
Ensembl chrNW_004936630:2,286,153...2,517,511 		JBrowse link
G Caskin1 CASK interacting protein 1 involved_in ISO (PMID:31727973) SynGO PMID:31727973 NCBI chrNW_004936694:1,856,529...1,868,107
Ensembl chrNW_004936694:1,856,603...1,866,617 		JBrowse link
G Cbln1 cerebellin 1 precursor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:2,493,280...2,496,738
Ensembl chrNW_004936475:2,494,156...2,496,743 		JBrowse link
G Cript CXXC repeat containing interactor of PDZ3 domain involved_in ISO PMID:10570482 SynGO PMID:10570482 RGD:8554363 NCBI chrNW_004936508:5,650,057...5,658,966
Ensembl chrNW_004936508:5,650,057...5,658,950 		JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 involved_in ISO (PMID:32324534) SynGO PMID:32324534 NCBI chrNW_004936710:1,760,365...1,815,269
Ensembl chrNW_004936710:1,760,089...1,815,508 		JBrowse link
G Grid2 glutamate ionotropic receptor delta type subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936687:20,126...1,421,075
Ensembl chrNW_004936687:549,947...1,421,133 		JBrowse link
G Il1rap interleukin 1 receptor accessory protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004937049:48,267...185,766
Ensembl chrNW_004937049:48,274...181,281 		JBrowse link
G Lrfn1 leucine rich repeat and fibronectin type III domain containing 1 involved_in ISO PMID:16630835 SynGO PMID:16630835 RGD:13702351 NCBI chrNW_004936661:2,167,264...2,179,193
Ensembl chrNW_004936661:2,167,198...2,174,336 		JBrowse link
G Lrfn4 leucine rich repeat and fibronectin type III domain containing 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936599:2,781,439...2,784,627
Ensembl chrNW_004936599:2,780,745...2,784,627 		JBrowse link
G Lrrc4b leucine rich repeat containing 4B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936889:328,465...361,778 JBrowse link
G Lrrtm1 leucine rich repeat transmembrane neuronal 1 involved_in ISO PMID:19285470 SynGO PMID:19285470 RGD:8554788 NCBI chrNW_004936556:5,915,265...5,934,004
Ensembl chrNW_004936556:5,928,622...5,931,499 		JBrowse link
G Lrrtm2 leucine rich repeat transmembrane neuronal 2 involved_in ISO PMID:19285470 SynGO PMID:19285470 RGD:8554788 NCBI chrNW_004936531:7,968,111...7,973,823
Ensembl chrNW_004936531:7,967,213...7,974,266 		JBrowse link
G Nlgn1 neuroligin 1 involved_in ISO (PMID:32324534) SynGO PMID:32324534 NCBI chrNW_004936703:951,935...1,415,991
Ensembl chrNW_004936703:758,647...1,414,185 		JBrowse link
G Nrxn1 neurexin 1 involved_in ISO (PMID:21410790) SynGO PMID:21410790 NCBI chrNW_004936508:1,889,640...2,954,039 JBrowse link
G Prickle1 prickle planar cell polarity protein 1 involved_in ISO (PMID:34613779) SynGO PMID:34613779 NCBI chrNW_004936512:1,165,159...1,270,138
Ensembl chrNW_004936512:1,163,615...1,270,255 		JBrowse link
G Prickle2 prickle planar cell polarity protein 2 involved_in ISO (PMID:23711981), (PMID:34613779) SynGO PMID:23711981 PMID:34613779 NCBI chrNW_004936637:2,225,400...2,299,307
Ensembl chrNW_004936637:2,003,209...2,333,278 		JBrowse link
G Ptk2b protein tyrosine kinase 2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936675:216,970...325,670
Ensembl chrNW_004936675:275,288...324,810 		JBrowse link
G Ptprd protein tyrosine phosphatase receptor type D involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936539:2,564,815...3,369,975
Ensembl chrNW_004936539:2,564,793...2,945,293 		JBrowse link
G Ptprs protein tyrosine phosphatase receptor type S involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936588:3,021,418...3,073,080
Ensembl chrNW_004936588:3,022,321...3,072,993 		JBrowse link
G Sipa1l1 signal induced proliferation associated 1 like 1 involved_in ISO PMID:11502259 SynGO PMID:11502259 RGD:8554032 NCBI chrNW_004936488:819,503...1,175,043
Ensembl chrNW_004936488:860,129...1,175,051 		JBrowse link
regulation of postsynaptic specialization assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef9 Cdc42 guanine nucleotide exchange factor 9 involved_in ISO (PMID:17690689) SynGO PMID:17690689 NCBI chrNW_004936635:3,817,034...3,956,928
Ensembl chrNW_004936635:3,816,606...3,960,190 		JBrowse link
G Gap43 growth associated protein 43 involved_in ISO PMID:25755278 SynGO PMID:25755278 RGD:13702431 NCBI chrNW_004936536:2,995,654...3,091,079 JBrowse link
G Nptxr neuronal pentraxin receptor involved_in ISO (PMID:27986928) SynGO PMID:27986928 NCBI chrNW_004936492:2,546,774...2,568,206
Ensembl chrNW_004936492:2,522,170...2,564,874 		JBrowse link
G Nrxn1 neurexin 1 involved_in ISO (PMID:15620359) SynGO PMID:15620359 NCBI chrNW_004936508:1,889,640...2,954,039 JBrowse link
G Sptbn2 spectrin beta, non-erythrocytic 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:2,890,404...2,928,502
Ensembl chrNW_004936599:2,890,817...2,928,499 		JBrowse link
G Wnt5a Wnt family member 5A involved_in ISO PMID:19332546 SynGO PMID:19332546 RGD:155230776 NCBI chrNW_004936473:6,031,627...6,052,211
Ensembl chrNW_004936473:6,029,976...6,052,159 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15969
    cellular process 15075
      cellular component organization or biogenesis 6470
        cellular component organization 6258
          organelle organization 3506
            organelle assembly 994
              postsynaptic specialization assembly 42
                postsynaptic density assembly + 32
                regulation of postsynaptic specialization assembly + 25
Path 2
Term Annotations click to browse term
  biological_process 15969
    cellular process 15075
      cellular component organization or biogenesis 6470
        cellular component biogenesis 3195
          cellular component assembly 2923
            cell junction assembly 517
              synapse assembly 269
                postsynapse assembly 90
                  postsynaptic specialization assembly 42
                    postsynaptic density assembly + 32
                    regulation of postsynaptic specialization assembly + 25
paths to the root