Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:postsynaptic specialization assembly
go back to main search page
Accession:GO:0098698 term browser browse the term
Definition:The aggregation, arrangement and bonding together of a set of components to form a postsynaptic specialization, a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane.


show annotations for term's descendants           Sort by:
postsynaptic specialization assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRK CRK proto-oncogene, adaptor protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:1,406,335...1,438,587
Ensembl chr17:1,306,509...1,336,569 		JBrowse link
G CRKL CRK like proto-oncogene, adaptor protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:3,141,147...3,177,448
Ensembl chr22:19,632,359...19,668,858 		JBrowse link
G DOCK7 dedicator of cytokinesis 7 involved_in ISO (PMID:21041412) SynGO PMID:21041412 NCBI chr 1:61,713,217...61,946,371
Ensembl chr 1:63,529,227...63,740,970 		JBrowse link
G NLGN1 neuroligin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:170,416,885...171,333,094
Ensembl chr 3:178,810,253...179,503,756 		JBrowse link
G NLGN2 neuroligin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:7,438,853...7,454,014 JBrowse link
G NLGN3 neuroligin 3 involved_in ISO PMID:17897391 SynGO PMID:17897391 RGD:9831151 NCBI chr  X:60,413,098...60,439,359
Ensembl chr  X:70,469,764...70,496,526 		JBrowse link
G NTNG2 netrin G2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:103,281,915...103,362,786
Ensembl chr 9:131,917,760...131,998,107 		JBrowse link
gephyrin clustering involved in postsynaptic density assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NLGN2 neuroligin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29107521) Ensembl
MGI		 PMID:29107521 GO_REF:0000107 NCBI chr17:7,438,853...7,454,014 JBrowse link
G NRXN1 neurexin 1 involved_in ISO (MGI:5284797|PMID:15620359), (MGI:5285129|PMID:21424692) BHF-UCL PMID:15620359 PMID:21424692 MGI:5284797 MGI:5285129 NCBI chr2A:50,063,398...51,178,659
Ensembl chr2A:50,985,067...52,091,277 		JBrowse link
G NRXN2 neurexin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:59,959,917...60,078,093
Ensembl chr11:63,303,659...63,409,687 		JBrowse link
G SLITRK3 SLIT and NTRK like family member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29107521) Ensembl
MGI		 PMID:29107521 GO_REF:0000107 NCBI chr 3:162,207,530...162,223,830
Ensembl chr 3:170,265,342...170,268,275 		JBrowse link
G ZDHHC12 zinc finger DHHC-type palmitoyltransferase 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:99,844,535...99,847,806
Ensembl chr 9:128,510,739...128,514,004 		JBrowse link
postsynaptic density assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1QL2 complement C1q like 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:6,097,758...6,102,622
Ensembl chr2B:119,679,840...119,686,120 		JBrowse link
G C1QL3 complement C1q like 3 involved_in ISO (PMID:27133466) SynGO PMID:27133466 NCBI chr10:16,829,350...16,839,614 JBrowse link
G CSMD2 CUB and Sushi multiple domains 2 involved_in ISO (PMID:31068362) SynGO PMID:31068362 NCBI chr 1:32,800,267...33,443,599
Ensembl chr 1:33,989,876...34,625,977 		JBrowse link
G NPTX1 neuronal pentraxin 1 involved_in ISO PMID:29024665 SynGO PMID:29024665 RGD:13702141 NCBI chr17:74,896,150...74,905,917 JBrowse link
G NRXN3 neurexin 3 involved_in ISO (PMID:27133466) SynGO PMID:27133466 NCBI chr14:58,729,335...60,444,769
Ensembl chr14:78,002,036...79,619,696 		JBrowse link
G NTRK3 neurotrophic receptor tyrosine kinase 3 involved_in ISO PMID:21262467 SynGO PMID:21262467 RGD:13702219 NCBI chr15:66,566,219...66,953,279
Ensembl chr15:85,776,832...86,157,204 		JBrowse link
G PTEN phosphatase and tensin homolog involved_in ISO (MGI:3772418|PMID:18082964) CACAO PMID:18082964 MGI:3772418 NCBI chr10:84,587,841...84,689,043
Ensembl chr10:88,093,539...88,194,605 		JBrowse link
G SHANK3 SH3 and multiple ankyrin repeat domains 3 involved_in ISO (MGI:4948759|PMID:21423165) BHF-UCL PMID:21423165 MGI:4948759 NCBI chr22:30,951,866...30,973,608 JBrowse link
G SLITRK3 SLIT and NTRK like family member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:29107521) Ensembl
MGI		 PMID:29107521 GO_REF:0000107 NCBI chr 3:162,207,530...162,223,830
Ensembl chr 3:170,265,342...170,268,275 		JBrowse link
regulation of postsynaptic density assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABI3BP ABI family member 3 binding protein involved_in ISO PMID:22485184 ARUK-UCL PMID:22485184 RGD:42721990 NCBI chr 3:97,842,070...98,086,311
Ensembl chr 3:104,523,470...104,765,688 		JBrowse link
G CASKIN1 CASK interacting protein 1 involved_in ISO (PMID:31727973) SynGO PMID:31727973 NCBI chr16:1,035,826...1,055,005 JBrowse link
G CBLN1 cerebellin 1 precursor involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:29,538,723...29,542,625
Ensembl chr16:48,427,645...48,430,512 		JBrowse link
G CRIPT CXXC repeat containing interactor of PDZ3 domain involved_in ISO PMID:10570482 SynGO PMID:10570482 RGD:8554363 NCBI chr2A:46,732,683...46,740,589
Ensembl chr2A:47,663,304...47,671,463 		JBrowse link
G FGFR1 fibroblast growth factor receptor 1 involved_in ISO (PMID:32324534) SynGO PMID:32324534 NCBI chr 8:37,713,133...37,773,098
Ensembl chr 8:34,890,147...34,948,904 		JBrowse link
G GRID2 glutamate ionotropic receptor delta type subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:84,663,030...86,170,778
Ensembl chr 4:95,339,460...96,807,748 		JBrowse link
G IL1RAP interleukin 1 receptor accessory protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:187,535,880...187,680,628
Ensembl chr 3:196,089,208...196,231,379 		JBrowse link
G LRFN1 leucine rich repeat and fibronectin type III domain containing 1 involved_in ISO PMID:16630835 SynGO PMID:16630835 RGD:13702351 NCBI chr19:36,405,065...36,419,178
Ensembl chr19:44,952,799...44,960,507 		JBrowse link
G LRFN4 leucine rich repeat and fibronectin type III domain containing 4 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:62,214,340...62,217,742
Ensembl chr11:65,536,427...65,539,629 		JBrowse link
G LRRC4B leucine rich repeat containing 4B involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:47,481,678...47,533,446
Ensembl chr19:56,381,130...56,423,084 		JBrowse link
G LRRTM1 leucine rich repeat transmembrane neuronal 1 involved_in ISO PMID:19285470 SynGO PMID:19285470 RGD:8554788 NCBI chr2A:80,376,582...80,392,899
Ensembl chr2A:81,953,891...81,955,459 		JBrowse link
G LRRTM2 leucine rich repeat transmembrane neuronal 2 involved_in ISO PMID:19285470 SynGO PMID:19285470 RGD:8554788 NCBI chr 5:134,247,933...134,254,188 JBrowse link
G NLGN1 neuroligin 1 involved_in ISO (PMID:32324534) SynGO PMID:32324534 NCBI chr 3:170,416,885...171,333,094
Ensembl chr 3:178,810,253...179,503,756 		JBrowse link
G NRXN1 neurexin 1 involved_in ISO (PMID:21410790) SynGO PMID:21410790 NCBI chr2A:50,063,398...51,178,659
Ensembl chr2A:50,985,067...52,091,277 		JBrowse link
G PRICKLE1 prickle planar cell polarity protein 1 involved_in ISO (PMID:34613779) SynGO PMID:34613779 NCBI chr12:46,127,673...46,262,333
Ensembl chr12:47,100,393...47,126,102 		JBrowse link
G PRICKLE2 prickle planar cell polarity protein 2 involved_in ISO (PMID:23711981), (PMID:34613779) SynGO PMID:23711981 PMID:34613779 NCBI chr 3:63,995,566...64,347,679
Ensembl chr 3:65,377,760...65,723,662 		JBrowse link
G PTK2B protein tyrosine kinase 2 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:26,580,855...26,729,378
Ensembl chr 8:23,869,825...23,932,474 		JBrowse link
G PTPRD protein tyrosine phosphatase receptor type D involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:8,113,171...10,420,732
Ensembl chr 9:8,288,569...8,831,227 		JBrowse link
G PTPRS protein tyrosine phosphatase receptor type S involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:4,227,038...4,361,958
Ensembl chr19:5,168,599...5,247,778 		JBrowse link
G SIPA1L1 signal induced proliferation associated 1 like 1 involved_in ISO PMID:11502259 SynGO PMID:11502259 RGD:8554032 NCBI chr14:51,909,444...52,328,719
Ensembl chr14:71,038,600...71,192,916 		JBrowse link
regulation of postsynaptic specialization assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARHGEF9 Cdc42 guanine nucleotide exchange factor 9 involved_in ISO (PMID:17690689) SynGO PMID:17690689 NCBI chr  X:52,779,238...52,946,480
Ensembl chr  X:62,862,115...63,010,512 		JBrowse link
G GAP43 growth associated protein 43 involved_in ISO PMID:25755278 SynGO PMID:25755278 RGD:13702431 NCBI chr 3:112,765,576...112,863,118
Ensembl chr 3:119,734,942...119,780,290 		JBrowse link
G NPTXR neuronal pentraxin receptor involved_in ISO (PMID:27986928) SynGO PMID:27986928 NCBI chr22:19,731,443...19,757,125 JBrowse link
G NRXN1 neurexin 1 involved_in ISO (PMID:15620359) SynGO PMID:15620359 NCBI chr2A:50,063,398...51,178,659
Ensembl chr2A:50,985,067...52,091,277 		JBrowse link
G SPTBN2 spectrin beta, non-erythrocytic 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:62,042,617...62,086,634
Ensembl chr11:65,365,588...65,409,207 		JBrowse link
G WNT5A Wnt family member 5A involved_in ISO PMID:19332546 SynGO PMID:19332546 RGD:155230776 NCBI chr 3:55,396,279...55,418,579
Ensembl chr 3:56,621,380...56,638,051 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16440
    cellular process 15499
      cellular component organization or biogenesis 6620
        cellular component organization 6401
          organelle organization 3612
            organelle assembly 1026
              postsynaptic specialization assembly 42
                postsynaptic density assembly + 32
                regulation of postsynaptic specialization assembly + 25
Path 2
Term Annotations click to browse term
  biological_process 16440
    cellular process 15499
      cellular component organization or biogenesis 6620
        cellular component biogenesis 3289
          cellular component assembly 3007
            cell junction assembly 528
              synapse assembly 273
                postsynapse assembly 91
                  postsynaptic specialization assembly 42
                    postsynaptic density assembly + 32
                    regulation of postsynaptic specialization assembly + 25
paths to the root