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ONTOLOGY REPORT - ANNOTATIONS


Term:postsynaptic specialization assembly
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Accession:GO:0098698 term browser browse the term
Definition:The aggregation, arrangement and bonding together of a set of components to form a postsynaptic specialization, a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane.


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postsynaptic specialization assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nlgn1 neuroligin 1 involved_in ISO (MGI:5284797|PMID:15620359) RGD PMID:15620359 MGI:5284797 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
G Nlgn2 neuroligin 2 involved_in ISO (MGI:4411943|PMID:19755106), (MGI:5284797|PMID:15620359) RGD PMID:15620359 PMID:19755106 MGI:4411943 MGI:5284797 NCBI chr10:56,431,586...56,444,847
Ensembl chr10:56,431,573...56,444,847
JBrowse link
G Nlgn3 neuroligin 3 involved_in IDA PMID:17897391 SynGO PMID:17897391 RGD:9831151 NCBI chr  X:71,199,390...71,227,460
Ensembl chr  X:71,199,491...71,222,732
JBrowse link
G Ntng2 netrin G2 involved_in ISO (MGI:3664681|PMID:16980967) RGD PMID:16980967 MGI:3664681 NCBI chr 3:7,742,511...7,800,834
Ensembl chr 3:7,742,531...7,796,385
JBrowse link
gephyrin clustering involved in postsynaptic density assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nlgn2 neuroligin 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5284797|PMID:15620359)
GO_REF:0000107
BHF-UCL
RGD
Ensembl
PMID:15620359 GO_REF:0000024 GO_REF:0000107 MGI:5284797 NCBI chr10:56,431,586...56,444,847
Ensembl chr10:56,431,573...56,444,847
JBrowse link
G Nrxn1 neurexin 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5284797|PMID:15620359), (MGI:5285129|PMID:21424692)
BHF-UCL
RGD
PMID:15620359 PMID:21424692 GO_REF:0000024 MGI:5284797 MGI:5285129 NCBI chr 6:13,886,757...15,191,660
Ensembl chr 6:13,886,740...15,191,660
JBrowse link
G Nrxn2 neurexin 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5285129|PMID:21424692)
GO_REF:0000107
BHF-UCL
RGD
Ensembl
PMID:21424692 GO_REF:0000024 GO_REF:0000107 MGI:5285129 NCBI chr 1:221,792,191...221,908,047
Ensembl chr 1:221,792,221...221,908,049
JBrowse link
G Zdhhc12 zinc finger DHHC-type palmitoyltransferase 12 involved_in ISS
ISO
GO_REF:0000024
(MGI:5586946|PMID:25025157)
UniProt
RGD
PMID:25025157 GO_REF:0000024 MGI:5586946 NCBI chr 3:8,656,397...8,659,102
Ensembl chr 3:8,656,412...8,659,102
JBrowse link
postsynaptic density assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pten phosphatase and tensin homolog involved_in ISO (MGI:3772418|PMID:18082964) RGD PMID:18082964 MGI:3772418 NCBI chr 1:251,421,814...251,487,634
Ensembl chr 1:251,421,596...251,487,832
JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:4948759|PMID:21423165)
GO_REF:0000107
BHF-UCL
RGD
Ensembl
PMID:21423165 GO_REF:0000024 GO_REF:0000107 MGI:4948759 NCBI chr 7:130,474,278...130,534,679
Ensembl chr 7:130,474,279...130,534,679
JBrowse link
regulation of postsynaptic density assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi3bp ABI family member 3 binding protein involved_in IMP PMID:22485184 ARUK-UCL PMID:22485184 RGD:42721990 NCBI chr11:46,206,932...46,422,791
Ensembl chr11:46,208,075...46,369,577
JBrowse link
G Cbln1 cerebellin 1 precursor involved_in ISO (MGI:4441214|PMID:20395510) RGD PMID:20395510 MGI:4441214 NCBI chr19:20,607,507...20,611,316
Ensembl chr19:20,607,507...20,611,316
JBrowse link
G Grid2 glutamate ionotropic receptor delta type subunit 2 involved_in IEA
ISO
GO_REF:0000107
(MGI:4441214|PMID:20395510)
Ensembl
RGD
PMID:20395510 GO_REF:0000107 MGI:4441214 NCBI chr 4:94,068,112...95,476,864
Ensembl chr 4:94,696,965...95,442,778
JBrowse link
G Il1rap interleukin 1 receptor accessory protein involved_in IEA
ISO
GO_REF:0000107
(MGI:5315316|PMID:22357843)
Ensembl
RGD
PMID:22357843 GO_REF:0000107 MGI:5315316 NCBI chr11:77,456,648...77,593,208
Ensembl chr11:77,463,954...77,593,207
JBrowse link
G Lrfn1 leucine rich repeat and fibronectin type III domain containing 1 involved_in IMP
IDA
PMID:16630835 SynGO PMID:16630835, PMID:16630835 RGD:13702351, RGD:13702351 NCBI chr 1:85,290,887...85,308,498
Ensembl chr 1:85,291,462...85,300,825
JBrowse link
G Lrfn4 leucine rich repeat and fibronectin type III domain containing 4 involved_in IBA
IMP
IDA
PMID:21873635
PMID:20410109
GO_Central
SynGO
PMID:21873635, PMID:20410109, PMID:20410109 RGD:13792537, RGD:13702463, RGD:13702463 NCBI chr 1:219,850,037...219,855,771
Ensembl chr 1:219,850,037...219,853,329
JBrowse link
G Lrrc4b leucine rich repeat containing 4B involved_in IMP
IBA
IDA
PMID:19252495
PMID:21873635
SynGO
GO_Central
PMID:19252495, PMID:21873635, PMID:19252495 RGD:13702321, RGD:13792537, RGD:13702321 NCBI chr 1:100,434,418...100,468,914
Ensembl chr 1:100,447,998...100,468,868
JBrowse link
G LRRTM1 leucine rich repeat transmembrane neuronal 1 involved_in IMP
IDA
PMID:19285470 SynGO PMID:19285470, PMID:19285470 RGD:8554788, RGD:8554788 NCBI chr 4:108,300,927...108,316,373
Ensembl chr 4:108,301,129...108,316,373
JBrowse link
G Lrrtm2 leucine rich repeat transmembrane neuronal 2 involved_in IDA
IMP
PMID:19285470 SynGO PMID:19285470, PMID:19285470 RGD:8554788, RGD:8554788 NCBI chr18:28,012,877...28,017,925
Ensembl chr18:28,012,877...28,017,925
JBrowse link
G Nptx1 neuronal pentraxin 1 involved_in IDA
EXP
IMP
PMID:29024665 SynGO PMID:29024665, PMID:29024665, PMID:29024665 RGD:13702141, RGD:13702141, RGD:13702141 NCBI chr10:108,682,637...108,691,592
Ensembl chr10:108,682,638...108,691,367
JBrowse link
G Nrxn1 neurexin 1 involved_in ISO (MGI:5294741|PMID:21410790) RGD PMID:21410790 MGI:5294741 NCBI chr 6:13,886,757...15,191,660
Ensembl chr 6:13,886,740...15,191,660
JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 involved_in EXP
IDA
PMID:21262467 SynGO PMID:21262467, PMID:21262467 RGD:13702219, RGD:13702219 NCBI chr 1:139,890,537...140,262,503
Ensembl chr 1:139,890,560...140,262,503
JBrowse link
G Ptprd protein tyrosine phosphatase, receptor type, D involved_in EXP
ISO
IDA
PMID:29024665
(MGI:5315316|PMID:22357843)
RGD PMID:22357843, PMID:29024665, PMID:29024665 MGI:5315316, RGD:13702141, RGD:13702141 NCBI chr 5:92,862,229...93,514,071
Ensembl chr 5:92,862,267...93,244,202
JBrowse link
G Ptprs protein tyrosine phosphatase, receptor type, S involved_in IDA
ISO
IMP
EXP
IEA
PMID:21262467
(MGI:4887276|PMID:21262467)
GO_REF:0000107
RGD
Ensembl
PMID:21262467, PMID:21262467, PMID:21262467, PMID:21262467 GO_REF:0000107 MGI:4887276, RGD:13702219, RGD:13702219, RGD:13702219 NCBI chr 9:10,585,360...10,646,205
Ensembl chr 9:10,603,813...10,645,939
JBrowse link
G Sipa1l1 signal-induced proliferation-associated 1 like 1 involved_in IMP
IDA
PMID:11502259 SynGO PMID:11502259, PMID:11502259 RGD:8554032, RGD:8554032 NCBI chr 6:106,052,212...106,163,249
Ensembl chr 6:106,039,991...106,163,302
JBrowse link
regulation of postsynaptic specialization assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef9 Cdc42 guanine nucleotide exchange factor 9 involved_in ISO (MGI:3722960|PMID:17690689) RGD PMID:17690689 MGI:3722960 NCBI chr  X:64,249,576...64,428,444
Ensembl chr  X:64,248,278...64,428,592
JBrowse link
G Gap43 growth associated protein 43 involved_in IDA
IMP
PMID:25755278 SynGO PMID:25755278, PMID:25755278 RGD:13702431, RGD:13702431 NCBI chr11:58,624,198...58,717,916
Ensembl chr11:58,624,198...58,717,914
JBrowse link
G Nptxr neuronal pentraxin receptor involved_in ISO (MGI:6189241|PMID:27986928) RGD PMID:27986928 MGI:6189241 NCBI chr 7:121,011,678...121,029,754
Ensembl chr 7:121,011,680...121,029,754
JBrowse link
G Nrxn1 neurexin 1 involved_in ISO (MGI:5284797|PMID:15620359) RGD PMID:15620359 MGI:5284797 NCBI chr 6:13,886,757...15,191,660
Ensembl chr 6:13,886,740...15,191,660
JBrowse link
G Numb NUMB, endocytic adaptor protein involved_in IDA
IMP
PMID:16394100 SynGO PMID:16394100, PMID:16394100 RGD:2302413, RGD:2302413 NCBI chr 6:107,279,917...107,325,345
Ensembl chr 6:107,279,920...107,325,345
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19491
    cellular process 18343
      cellular component organization or biogenesis 6721
        cellular component organization 6481
          organelle organization 4060
            organelle assembly 956
              postsynaptic specialization assembly 27
                postsynaptic density assembly + 20
                regulation of postsynaptic specialization assembly + 19
Path 2
Term Annotations click to browse term
  biological_process 19491
    cellular process 18343
      cellular component organization or biogenesis 6721
        cellular component biogenesis 3292
          cellular component assembly 2996
            cell junction assembly 459
              synapse assembly 195
                postsynapse assembly 32
                  postsynaptic specialization assembly 27
                    postsynaptic density assembly + 20
                    regulation of postsynaptic specialization assembly + 19
paths to the root