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ONTOLOGY REPORT - ANNOTATIONS

Term:hippocampal mossy fiber to CA3 synapse
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Accession:GO:0098686 term browser browse the term
Definition:One of the giant synapses that form between the mossy fiber axons of dentate gyrus granule cells and the large complex spines of CA3 pyramidal cells. It consists of a giant bouton known as the mossy fiber expansion, synapsed to the complex, multiheaded spine (thorny excresence) of a CA3 pyramidal cell.


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hippocampal mossy fiber to CA3 synapse term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADCY1 adenylate cyclase 1 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr 7:46,289,042...46,436,839
Ensembl chr 7:46,354,640...46,492,549 		JBrowse link
G ADCY8 adenylate cyclase 8 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr 8:127,418,407...127,681,217
Ensembl chr 8:130,398,288...130,661,073 		JBrowse link
G AFDN afadin, adherens junction formation factor is_active_in ISO (PMID:11827984) SynGO PMID:11827984 NCBI chr 6:165,778,026...165,923,685
Ensembl chr 6:170,775,904...170,882,784 		JBrowse link
G AKAP7 A-kinase anchoring protein 7 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr 6:128,936,583...129,084,018
Ensembl chr 6:133,043,403...133,190,745 		JBrowse link
G ANKS1B ankyrin repeat and sterile alpha motif domain containing 1B is_active_in ISO PMID:20575057 SynGO PMID:20575057 RGD:13702247 NCBI chr12:96,313,293...97,559,597
Ensembl chr12:99,737,252...100,968,475 		JBrowse link
G BACE1 beta-secretase 1 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr11:112,120,950...112,151,505
Ensembl chr11:116,054,303...116,084,812 		JBrowse link
G BDNF brain derived neurotrophic factor is_active_in ISO (PMID:22412021) SynGO PMID:22412021 NCBI chr11:27,618,322...27,687,661
Ensembl chr11:27,520,312...27,589,239 		JBrowse link
G BSN bassoon presynaptic cytomatrix protein is_active_in ISO PMID:9679147
PMID:10340516 		SynGO PMID:9679147 PMID:10340516 RGD:13702152 RGD:69780 NCBI chr 3:49,483,652...49,603,928
Ensembl chr 3:50,790,552...50,841,178 		JBrowse link
G C1QL2 complement C1q like 2 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr2B:6,097,758...6,102,622
Ensembl chr2B:119,679,840...119,686,120 		JBrowse link
G C1QL3 complement C1q like 3 is_active_in ISO (PMID:27133466) SynGO PMID:27133466 NCBI chr10:16,829,350...16,839,614 JBrowse link
G C9orf72 C9orf72-SMCR8 complex subunit is_active_in ISO (PMID:31651360) SynGO PMID:31651360 NCBI chr 9:27,395,054...27,422,282
Ensembl chr 9:28,001,813...28,022,066 		JBrowse link
G CACNG2 calcium voltage-gated channel auxiliary subunit gamma 2 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr22:17,475,693...17,618,299
Ensembl chr22:35,317,121...35,454,850 		JBrowse link
G CALB1 calbindin 1 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr 8:86,747,702...86,771,995
Ensembl chr 8:88,699,532...88,723,814 		JBrowse link
G CALCA calcitonin related polypeptide alpha is_active_in ISO PMID:9383204 SynGO PMID:9383204 RGD:155230740 NCBI chr11:15,055,897...15,061,539
Ensembl chr11:14,745,588...14,751,267 		JBrowse link
G CAPZB capping actin protein of muscle Z-line subunit beta is_active_in IEA Ensembl GO_REF:0000107 NCBI chr 1:18,297,434...18,444,011
Ensembl chr 1:19,344,154...19,488,133 		JBrowse link
G CDH9 cadherin 9 is_active_in
located_in 		ISO (PMID:21867881) SynGO
SynGO-UCL		 PMID:21867881 NCBI chr 5:83,370,927...83,529,513
Ensembl chr 5:88,910,116...89,067,493 		JBrowse link
G CTNNA2 catenin alpha 2 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr2A:79,594,694...80,745,885
Ensembl chr2A:81,303,559...82,307,258 		JBrowse link
G CTNND1 catenin delta 1 is_active_in ISO PMID:12727444 SynGO PMID:12727444 RGD:2316208 NCBI chr11:53,000,582...53,058,054
Ensembl chr11:56,470,174...56,527,593 		JBrowse link
G DTNBP1 dystrobrevin binding protein 1 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr 6:15,377,263...15,523,317
Ensembl chr 6:15,741,698...15,887,256 		JBrowse link
G EFNB3 ephrin B3 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr17:7,737,297...7,743,732
Ensembl chr17:7,724,983...7,731,270 		JBrowse link
G EPHA7 EPH receptor A7 is_active_in ISO PMID:26780036 SynGO PMID:26780036 RGD:13702137 NCBI chr 6:91,143,240...91,322,040
Ensembl chr 6:94,392,353...94,566,716 		JBrowse link
G EPHB2 EPH receptor B2 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr 1:21,895,961...22,107,649
Ensembl chr 1:22,912,570...23,047,118 		JBrowse link
G FMR1 fragile X messenger ribonucleoprotein 1 is_active_in ISO (PMID:19193898) SynGO PMID:19193898 NCBI chr  X:136,937,889...136,976,828
Ensembl chr  X:147,365,748...147,405,321 		JBrowse link
G GABRA6 gamma-aminobutyric acid type A receptor subunit alpha6 is_active_in ISO PMID:8613776 SynGO PMID:8613776 RGD:1626602 NCBI chr 5:157,072,915...157,089,994
Ensembl chr 5:163,767,304...163,784,331 		JBrowse link
G GNAI2 G protein subunit alpha i2 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr 3:50,154,731...50,187,948
Ensembl chr 3:51,398,981...51,421,988 		JBrowse link
G GPER1 G protein-coupled estrogen receptor 1 is_active_in ISO (PMID:29421611) SynGO PMID:29421611 NCBI chr 7:1,331,586...1,338,194 JBrowse link
G GRIK2 glutamate ionotropic receptor kainate type subunit 2 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr 6:98,720,430...99,903,582
Ensembl chr 6:103,334,707...103,783,092 		JBrowse link
G GRIK4 glutamate ionotropic receptor kainate type subunit 4 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr11:115,348,836...115,827,873
Ensembl chr11:119,564,412...119,750,000 		JBrowse link
G GRIK5 glutamate ionotropic receptor kainate type subunit 5 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr19:38,886,108...38,956,938
Ensembl chr19:47,389,804...47,544,604 		JBrowse link
G GRIN1 glutamate ionotropic receptor NMDA type subunit 1 is_active_in ISO PMID:23159309 SynGO PMID:23159309 RGD:13702288 NCBI chr 9:108,198,350...108,228,887
Ensembl chr 9:137,168,722...137,197,382 		JBrowse link
G GRIN2B glutamate ionotropic receptor NMDA type subunit 2B is_active_in ISO PMID:23159309 SynGO PMID:23159309 RGD:13702288 NCBI chr12:13,543,104...13,987,437
Ensembl chr12:13,969,387...14,388,799 		JBrowse link
G GRIN2D glutamate ionotropic receptor NMDA type subunit 2D is_active_in ISO PMID:23159309 SynGO PMID:23159309 RGD:13702288 NCBI chr19:45,392,258...45,447,004 JBrowse link
G GRIN3B glutamate ionotropic receptor NMDA type subunit 3B is_active_in ISO PMID:23159309 SynGO PMID:23159309 RGD:13702288 Ensembl chr19:975,872...982,757 JBrowse link
G IGSF8 immunoglobulin superfamily member 8 is_active_in ISO PMID:33057002 SynGO PMID:33057002 RGD:405650219 NCBI chr 1:135,445,180...135,452,684
Ensembl chr 1:139,366,228...139,374,732 		JBrowse link
G LNX1 ligand of numb-protein X 1 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr 4:70,374,106...70,497,058
Ensembl chr 4:76,911,082...77,050,270 		JBrowse link
G LRRTM2 leucine rich repeat transmembrane neuronal 2 is_active_in ISO PMID:19285470 SynGO PMID:19285470 RGD:8554788 NCBI chr 5:134,247,933...134,254,188 JBrowse link
G MAL2 mal, T cell differentiation protein 2 is_active_in ISO PMID:20053882 SynGO PMID:20053882 RGD:13702398 NCBI chr 8:115,894,617...115,935,359
Ensembl chr 8:118,413,391...118,452,972 		JBrowse link
G NAPEPLD N-acyl phosphatidylethanolamine phospholipase D is_active_in IEA Ensembl GO_REF:0000107 NCBI chr 7:95,074,084...95,123,936
Ensembl chr 7:107,923,960...107,973,269 		JBrowse link
G NECTIN1 nectin cell adhesion molecule 1 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr11:114,497,177...114,565,338
Ensembl chr11:118,401,321...118,493,090 		JBrowse link
G NECTIN3 nectin cell adhesion molecule 3 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr 3:108,223,380...108,354,079
Ensembl chr 3:115,148,481...115,270,507 		JBrowse link
G NTM neurotrimin is_active_in ISO PMID:12373100 SynGO PMID:12373100 RGD:2314481 NCBI chr11:126,189,660...127,154,890
Ensembl chr11:130,617,876...131,037,876 		JBrowse link
G P2RX3 purinergic receptor P2X 3 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr11:52,579,190...52,614,329
Ensembl chr 3:160,070,875...160,106,120 		JBrowse link
G PDYN prodynorphin is_active_in IEA Ensembl GO_REF:0000107 NCBI chr20:2,092,171...2,108,141
Ensembl chr20:1,856,850...1,872,452 		JBrowse link
G PPP3R1 protein phosphatase 3 regulatory subunit B, alpha is_active_in ISO (PMID:23825400) SynGO PMID:23825400 NCBI chr2A:68,227,282...68,300,482 JBrowse link
G PRKAR1B protein kinase cAMP-dependent type I regulatory subunit beta is_active_in IEA Ensembl GO_REF:0000107 NCBI chr 7:700,691...876,497
Ensembl chr 7:923,668...1,097,456 		JBrowse link
G PTPRD protein tyrosine phosphatase receptor type D is_active_in IEA Ensembl GO_REF:0000107 NCBI chr 9:8,113,171...10,420,732
Ensembl chr 9:8,288,569...8,831,227 		JBrowse link
G RAPGEF4 Rap guanine nucleotide exchange factor 4 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr2B:60,022,738...60,339,981
Ensembl chr2B:177,655,733...177,793,644 		JBrowse link
G RNF19A ring finger protein 19A, RBR E3 ubiquitin protein ligase is_active_in ISO (PMID:26553645) SynGO PMID:26553645 NCBI chr 8:96,897,388...96,950,440
Ensembl chr 8:99,070,813...99,123,495 		JBrowse link
G ROGDI rogdi atypical leucine zipper is_active_in ISO PMID:29150638 SynGO PMID:29150638 RGD:155230779 NCBI chr16:3,721,063...3,727,056
Ensembl chr16:4,887,051...4,892,607 		JBrowse link
G SH3GL1 SH3 domain containing GRB2 like 1, endophilin A2 is_active_in ISO PMID:11518713 RGD
SynGO		 PMID:11518713 RGD:13464360 NCBI chr19:3,383,267...3,423,165
Ensembl chr19:4,329,750...4,340,121 		JBrowse link
G SH3GL2 SH3 domain containing GRB2 like 2, endophilin A1 is_active_in ISO PMID:11518713 SynGO PMID:11518713 RGD:13464360 NCBI chr 9:17,386,298...17,605,722
Ensembl chr 9:18,045,198...18,097,579 		JBrowse link
G SHANK2 SH3 and multiple ankyrin repeat domains 2 is_active_in ISO PMID:10414979 SynGO PMID:10414979 RGD:634008 NCBI chr11:65,570,677...66,268,139
Ensembl chr11:68,860,606...69,437,925 		JBrowse link
G SHH sonic hedgehog signaling molecule is_active_in ISO PMID:22446553 SynGO PMID:22446553 RGD:405650294 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651 		JBrowse link
G SLC16A7 solute carrier family 16 member 7 is_active_in ISO PMID:15749979 SynGO PMID:15749979 RGD:13702297 NCBI chr12:29,128,600...29,317,797
Ensembl chr12:29,390,576...29,528,851 		JBrowse link
G SLC30A3 solute carrier family 30 member 3 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr2A:27,255,944...27,276,720
Ensembl chr2A:27,344,045...27,353,543 		JBrowse link
G SLC39A3 solute carrier family 39 member 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr19:1,756,535...1,764,099
Ensembl chr19:2,714,852...2,722,654 		JBrowse link
G SLC6A9 solute carrier family 6 member 9 is_active_in ISO PMID:15749988 SynGO PMID:15749988 RGD:13702293 NCBI chr 1:43,298,326...43,333,345
Ensembl chr 1:44,664,839...44,704,882 		JBrowse link
G SNAP47 synaptosome associated protein 47 is_active_in ISO PMID:28751858 SynGO PMID:28751858 RGD:13702396 NCBI chr 1:203,128,827...203,181,521
Ensembl chr 1:208,115,118...208,161,139 		JBrowse link
G STXBP5 syntaxin binding protein 5 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr 6:145,006,696...145,192,467
Ensembl chr 6:149,719,064...149,902,662 		JBrowse link
G SUMO2 small ubiquitin like modifier 2 is_active_in ISO (PMID:37009224) SynGO PMID:37009224 NCBI chr17:69,115,433...69,130,065 JBrowse link
G SYNPR synaptoporin is_active_in ISO PMID:23312519 SynGO PMID:23312519 RGD:155230703 NCBI chr 3:63,186,196...63,523,267
Ensembl chr 3:64,569,397...64,908,183 		JBrowse link
G SYT1 synaptotagmin 1 is_active_in ISO PMID:7298720 SynGO PMID:7298720 RGD:13702422 NCBI chr12:76,392,955...76,981,800
Ensembl chr12:79,595,704...79,829,923 		JBrowse link
G SYT12 synaptotagmin 12 is_active_in
located_in 		IEA
ISO 		(PMID:23739973) Ensembl
UniProt		 PMID:23739973 GO_REF:0000107 NCBI chr11:62,383,485...62,412,451
Ensembl chr11:65,709,808...65,733,010 		JBrowse link
G SYT7 synaptotagmin 7 is_active_in ISO PMID:11395007 SynGO PMID:11395007 RGD:634203 NCBI chr11:56,814,694...56,880,439
Ensembl chr11:60,175,403...60,242,375 		JBrowse link
G SYT9 synaptotagmin 9 is_active_in IEA Ensembl GO_REF:0000107 NCBI chr11:7,350,612...7,565,272
Ensembl chr11:7,032,803...7,247,187 		JBrowse link
G TNR tenascin R is_active_in ISO PMID:11598921 SynGO PMID:11598921 RGD:13702357 NCBI chr 1:150,826,892...151,257,301
Ensembl chr 1:154,532,582...154,615,538 		JBrowse link
G UNC13B unc-13 homolog B is_active_in ISO (PMID:19700493) SynGO PMID:19700493 NCBI chr 9:35,011,350...35,255,148
Ensembl chr 9:35,817,353...36,059,894 		JBrowse link
G VAMP7 vesicle associated membrane protein 7 is_active_in ISO PMID:14596849 SynGO PMID:14596849 RGD:13702238 NCBI chr  X:145,362,432...145,425,097
Ensembl chr  X:155,257,185...155,320,215 		JBrowse link
G VTI1A vesicle transport through interaction with t-SNAREs 1A is_active_in ISO PMID:10908612
PMID:12067063 		SynGO PMID:10908612 PMID:12067063 RGD:1299316 RGD:634537 NCBI chr10:109,037,834...109,539,019
Ensembl chr10:112,476,859...112,845,615 		JBrowse link
G YWHAZ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta is_active_in ISO (PMID:22124272) SynGO PMID:22124272 NCBI chr 8:97,560,251...97,595,117
Ensembl chr 8:99,730,393...99,762,990 		JBrowse link
Term paths to the root
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Term Annotations click to browse term
  cellular_component 20330
    cellular anatomical structure 19896
      cell junction 2451
        synapse 1887
          neuron to neuron synapse 539
            hippocampal mossy fiber to CA3 synapse 70
paths to the root