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ONTOLOGY REPORT - ANNOTATIONS

Term:hippocampal mossy fiber to CA3 synapse
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Accession:GO:0098686 term browser browse the term
Definition:One of the giant synapses that form between the mossy fiber axons of dentate gyrus granule cells and the large complex spines of CA3 pyramidal cells. It consists of a giant bouton known as the mossy fiber expansion, synapsed to the complex, multiheaded spine (thorny excresence) of a CA3 pyramidal cell.


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hippocampal mossy fiber to CA3 synapse term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adcy1 adenylate cyclase 1 is_active_in ISO (PMID:9547227) RGD PMID:9547227 NCBI chr14:81,911,240...82,020,594
Ensembl chr14:81,911,099...82,028,969 		JBrowse link
G Adcy8 adenylate cyclase 8 is_active_in ISO
IEA 		(PMID:14585998)
GO_REF:0000107 		RGD
Ensembl		 PMID:14585998 GO_REF:0000107 NCBI chr 7:96,417,310...96,665,911
Ensembl chr 7:96,417,324...96,665,911 		JBrowse link
G Afdn afadin, adherens junction formation factor is_active_in ISO (PMID:11827984) RGD PMID:11827984 NCBI chr 1:53,905,344...54,034,216
Ensembl chr 1:53,905,373...54,034,216 		JBrowse link
G Akap7 A-kinase anchoring protein 7 is_active_in ISO (PMID:27911261) RGD PMID:27911261 NCBI chr 1:20,087,190...20,217,799
Ensembl chr 1:20,087,373...20,217,797 		JBrowse link
G Anks1b ankyrin repeat and sterile alpha motif domain containing 1B is_active_in IDA PMID:20575057 SynGO PMID:20575057 RGD:13702247 NCBI chr 7:24,313,339...25,479,307
Ensembl chr 7:24,312,843...25,477,693 		JBrowse link
G Bace1 beta-secretase 1 is_active_in ISO
IEA 		(PMID:18753368), (PMID:23820808)
GO_REF:0000107 		RGD
Ensembl		 PMID:18753368 PMID:23820808 GO_REF:0000107 NCBI chr 8:46,142,060...46,166,268
Ensembl chr 8:46,142,116...46,165,876 		JBrowse link
G Bdnf brain-derived neurotrophic factor is_active_in ISO (PMID:22412021) RGD PMID:22412021 NCBI chr 3:96,165,042...96,215,621
Ensembl chr 3:96,165,042...96,215,615 		JBrowse link
G Bsn bassoon (presynaptic cytomatrix protein) is_active_in IDA PMID:9679147
PMID:10340516 		SynGO PMID:9679147 PMID:10340516 RGD:69780, RGD:13702152 NCBI chr 8:108,784,849...108,875,819
Ensembl chr 8:108,788,542...108,875,819 		JBrowse link
G C1ql2 complement C1q like 2 is_active_in ISO
IEA 		(PMID:27133466)
GO_REF:0000107 		RGD
Ensembl		 PMID:27133466 GO_REF:0000107 NCBI chr13:31,471,150...31,472,685
Ensembl chr13:31,471,150...31,472,689 		JBrowse link
G C1ql3 complement C1q like 3 is_active_in ISO (PMID:27133466) RGD PMID:27133466 NCBI chr17:76,119,344...76,129,170
Ensembl chr17:76,119,447...76,128,530 		JBrowse link
G Cacng2 calcium voltage-gated channel auxiliary subunit gamma 2 is_active_in ISO
IEA 		(PMID:11140673)
GO_REF:0000107 		RGD
Ensembl		 PMID:11140673 GO_REF:0000107 NCBI chr 7:109,572,838...109,698,516
Ensembl chr 7:109,574,459...109,697,227 		JBrowse link
G Calb1 calbindin 1 is_active_in ISO
IEA 		(PMID:12691666)
GO_REF:0000107 		RGD
Ensembl		 PMID:12691666 GO_REF:0000107 NCBI chr 5:29,375,624...29,402,532
Ensembl chr 5:29,375,642...29,402,431 		JBrowse link
G Calca calcitonin-related polypeptide alpha is_active_in IDA PMID:9383204 SynGO PMID:9383204 RGD:155230740 NCBI chr 1:168,878,212...168,883,176
Ensembl chr 1:168,878,214...168,883,105 		JBrowse link
G Capzb capping actin protein of muscle Z-line subunit beta is_active_in ISO (PMID:20545768) RGD PMID:20545768 NCBI chr 5:151,435,600...151,535,409
Ensembl chr 5:151,434,871...151,535,409 		JBrowse link
G Cdh9 cadherin 9 is_active_in
located_in 		ISO (PMID:21867881) RGD PMID:21867881 NCBI chr 2:66,280,422...66,367,121
Ensembl chr 2:66,228,117...66,367,121 		JBrowse link
G Ctnna2 catenin alpha 2 is_active_in ISO (PMID:8909549) RGD PMID:8909549 NCBI chr 4:109,294,249...110,443,409
Ensembl chr 4:109,293,978...110,443,522 		JBrowse link
G Ctnnd1 catenin delta 1 is_active_in IDA PMID:12727444 SynGO PMID:12727444 RGD:2316208 NCBI chr 3:69,683,328...69,734,550
Ensembl chr 3:69,683,313...69,734,516 		JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 is_active_in ISO
IEA 		(PMID:16980328)
GO_REF:0000107 		RGD
Ensembl		 PMID:16980328 GO_REF:0000107 NCBI chr17:19,685,218...19,776,668
Ensembl chr17:19,685,215...19,776,661 		JBrowse link
G Efnb3 ephrin B3 is_active_in ISO (PMID:16571754) RGD PMID:16571754 NCBI chr10:54,274,506...54,281,951
Ensembl chr10:54,274,506...54,280,471 		JBrowse link
G Epha7 Eph receptor A7 is_active_in IDA PMID:26780036 SynGO PMID:26780036 RGD:13702137 NCBI chr 5:42,975,353...43,128,703
Ensembl chr 5:42,975,405...43,127,112 		JBrowse link
G Ephb2 Eph receptor B2 is_active_in ISO
IEA 		(PMID:30185604)
GO_REF:0000107 		RGD
Ensembl		 PMID:30185604 GO_REF:0000107 NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:148,897,246...149,077,059 		JBrowse link
G Fmr1 fragile X messenger ribonucleoprotein 1 is_active_in ISO (PMID:19193898) RGD PMID:19193898 NCBI chr  X:147,240,239...147,278,057
Ensembl chr  X:147,240,301...147,278,050 		JBrowse link
G Gabra6 gamma-aminobutyric acid type A receptor subunit alpha6 is_active_in IDA PMID:8613776 SynGO PMID:8613776 RGD:1626602 NCBI chr10:26,810,411...26,825,768
Ensembl chr10:26,810,423...26,825,769 		JBrowse link
G Gnai2 G protein subunit alpha i2 is_active_in ISO
IEA 		(PMID:16606834)
GO_REF:0000107 		RGD
Ensembl		 PMID:16606834 GO_REF:0000107 NCBI chr 8:108,288,401...108,309,009
Ensembl chr 8:108,288,401...108,308,979 		JBrowse link
G Gper1 G protein-coupled estrogen receptor 1 is_active_in ISO (PMID:29421611) RGD PMID:29421611 NCBI chr12:15,217,217...15,222,679
Ensembl chr12:15,217,442...15,221,889 		JBrowse link
G Grik2 glutamate ionotropic receptor kainate type subunit 2 is_active_in ISO
IEA 		(PMID:22345355), (PMID:9580260)
GO_REF:0000107 		RGD
Ensembl		 PMID:9580260 PMID:22345355 GO_REF:0000107 NCBI chr20:52,135,325...52,833,061
Ensembl chr20:52,133,851...52,838,375 		JBrowse link
G Grik4 glutamate ionotropic receptor kainate type subunit 4 is_active_in ISO
IEA 		(PMID:12954862)
GO_REF:0000107 		RGD
Ensembl		 PMID:12954862 GO_REF:0000107 NCBI chr 8:42,903,043...43,331,990
Ensembl chr 8:42,905,056...43,193,751 		JBrowse link
G Grik5 glutamate ionotropic receptor kainate type subunit 5 is_active_in ISO
IEA 		(PMID:12954862), (PMID:22345355)
GO_REF:0000107 		RGD
Ensembl		 PMID:12954862 PMID:22345355 GO_REF:0000107 NCBI chr 1:80,605,878...80,667,896
Ensembl chr 1:80,605,892...80,667,125 		JBrowse link
G Grin1 glutamate ionotropic receptor NMDA type subunit 1 is_active_in IDA PMID:23159309 SynGO PMID:23159309 RGD:13702288 NCBI chr 3:8,103,680...8,130,603
Ensembl chr 3:8,103,680...8,130,603 		JBrowse link
G Grin2b glutamate ionotropic receptor NMDA type subunit 2B is_active_in IDA PMID:23159309 SynGO PMID:23159309 RGD:13702288 NCBI chr 4:168,580,824...169,044,110
Ensembl chr 4:168,599,546...169,042,279 		JBrowse link
G Grin2d glutamate ionotropic receptor NMDA type subunit 2D is_active_in IDA PMID:23159309 SynGO PMID:23159309 RGD:13702288 NCBI chr 1:96,306,871...96,346,994
Ensembl chr 1:96,308,365...96,344,793 		JBrowse link
G Grin3b glutamate ionotropic receptor NMDA type subunit 3B is_active_in IDA PMID:23159309 SynGO PMID:23159309 RGD:13702288 NCBI chr 7:9,730,861...9,737,183
Ensembl chr 7:9,730,862...9,737,183 		JBrowse link
G Igsf8 immunoglobulin superfamily, member 8 is_active_in EXP
IDA 		PMID:33057002 SynGO PMID:33057002 PMID:33057002 RGD:405650219, RGD:405650219 NCBI chr13:84,770,348...84,781,534
Ensembl chr13:84,770,279...84,778,576 		JBrowse link
G Lnx1 ligand of numb-protein X 1 is_active_in ISO
IEA 		(PMID:30185604)
GO_REF:0000107 		RGD
Ensembl		 PMID:30185604 GO_REF:0000107 NCBI chr14:33,868,517...33,971,217
Ensembl chr14:33,514,436...33,617,086 		JBrowse link
G Lrrtm2 leucine rich repeat transmembrane neuronal 2 is_active_in IDA
IMP
IEP 		PMID:19285470 SynGO PMID:19285470 PMID:19285470 PMID:19285470 RGD:8554788, RGD:8554788, RGD:8554788 NCBI chr18:26,817,816...26,822,864
Ensembl chr18:26,817,816...26,822,864 		JBrowse link
G Mal2 mal, T-cell differentiation protein 2 is_active_in EXP
IDA
IEP 		PMID:20053882 SynGO PMID:20053882 PMID:20053882 PMID:20053882 RGD:13702398, RGD:13702398, RGD:13702398 NCBI chr 7:85,900,453...85,933,433
Ensembl chr 7:85,900,453...85,933,429 		JBrowse link
G Napepld N-acyl phosphatidylethanolamine phospholipase D is_active_in ISO (PMID:18234884) RGD PMID:18234884 NCBI chr 4:13,360,532...13,398,815
Ensembl chr 4:13,361,006...13,398,748 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 is_active_in ISO
IEA 		(PMID:11827984)
GO_REF:0000107 		RGD
Ensembl		 PMID:11827984 GO_REF:0000107 NCBI chr 8:44,101,776...44,164,863
Ensembl chr 8:44,101,776...44,189,787 		JBrowse link
G Nectin3 nectin cell adhesion molecule 3 is_active_in ISO
IEA 		(PMID:11827984)
GO_REF:0000107 		RGD
Ensembl		 PMID:11827984 GO_REF:0000107 NCBI chr11:54,362,712...54,469,351
Ensembl chr11:54,364,487...54,462,519 		JBrowse link
G Ntm neurotrimin is_active_in IDA PMID:12373100 SynGO PMID:12373100 RGD:2314481 NCBI chr 8:27,376,582...28,366,604
Ensembl chr 8:27,377,773...28,366,595 		JBrowse link
G P2rx3 purinergic receptor P2X 3 is_active_in ISO (PMID:17074061) RGD PMID:17074061 NCBI chr 3:70,080,850...70,124,664
Ensembl chr 3:70,080,851...70,125,178 		JBrowse link
G Pdyn prodynorphin is_active_in ISO
IEA 		(PMID:10098940)
GO_REF:0000107 		RGD
Ensembl		 PMID:10098940 GO_REF:0000107 NCBI chr 3:116,900,990...116,913,334
Ensembl chr 3:116,900,992...116,913,334 		JBrowse link
G Ppp3r1 protein phosphatase 3, regulatory subunit B, alpha is_active_in ISO (PMID:23825400) RGD PMID:23825400 NCBI chr14:91,556,743...91,606,391
Ensembl chr14:91,604,121...91,606,907 		JBrowse link
G Prkar1b protein kinase cAMP-dependent type I regulatory subunit beta is_active_in ISO
IEA 		(PMID:8548807)
GO_REF:0000107 		RGD
Ensembl		 PMID:8548807 GO_REF:0000107 NCBI chr12:20,606,066...20,738,766
Ensembl chr12:15,511,801...15,624,942 		JBrowse link
G Ptprd protein tyrosine phosphatase, receptor type, D is_active_in ISO (PMID:10856223) RGD PMID:10856223 NCBI chr 5:90,046,993...90,698,977
NCBI chr 5:91,122,354...91,641,754
Ensembl chr 5:90,048,966...92,369,396 		JBrowse link
G Rapgef4 Rap guanine nucleotide exchange factor 4 is_active_in ISO (PMID:25904804) RGD PMID:25904804 NCBI chr 3:77,217,024...77,509,933
Ensembl chr 3:56,809,270...57,102,316 		JBrowse link
G RGD1359108 similar to RIKEN cDNA 3110043O21 is_active_in ISO
IEA 		(PMID:31651360)
GO_REF:0000107 		RGD
Ensembl		 PMID:31651360 GO_REF:0000107 NCBI chr 5:49,766,340...49,791,434
Ensembl chr 5:49,766,325...49,791,408 		JBrowse link
G Rnf19a ring finger protein 19A, RBR E3 ubiquitin protein ligase is_active_in ISO (PMID:26553645) RGD PMID:26553645 NCBI chr 7:69,310,947...69,350,567
Ensembl chr 7:67,425,837...67,465,222 		JBrowse link
G Rogdi rogdi atypical leucine zipper is_active_in IMP
IDA 		PMID:29150638 SynGO PMID:29150638 PMID:29150638 RGD:155230779, RGD:155230779 NCBI chr10:10,567,834...10,572,453
Ensembl chr10:10,567,834...10,572,452 		JBrowse link
G Sh3gl1 SH3 domain containing GRB2 like 1, endophilin A2 is_active_in IDA PMID:11518713 RGD
SynGO		 PMID:11518713 PMID:11518713 RGD:13464360, RGD:13464360 NCBI chr 9:842,285...869,753
Ensembl chr 9:842,288...869,716 		JBrowse link
G Sh3gl2 SH3 domain containing GRB2 like 2, endophilin A1 is_active_in IDA PMID:11518713 SynGO PMID:11518713 RGD:13464360 NCBI chr 5:99,653,189...99,827,500
Ensembl chr 5:99,653,152...100,113,843 		JBrowse link
G Shank2 SH3 and multiple ankyrin repeat domains 2 is_active_in IDA PMID:10414979 SynGO PMID:10414979 RGD:634008 NCBI chr 1:199,146,210...199,590,962
Ensembl chr 1:199,169,429...199,589,394 		JBrowse link
G Shh sonic hedgehog signaling molecule is_active_in IDA PMID:22446553 SynGO PMID:22446553 RGD:405650294 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Slc16a7 solute carrier family 16 member 7 is_active_in IDA PMID:15749979 SynGO PMID:15749979 RGD:13702297 NCBI chr 7:62,929,067...63,096,995
Ensembl chr 7:61,051,167...61,154,994 		JBrowse link
G Slc30a3 solute carrier family 30 member 3 is_active_in ISO (PMID:9990090) RGD PMID:9990090 NCBI chr 6:25,264,310...25,284,720
Ensembl chr 6:25,275,528...25,284,720 		JBrowse link
G Slc39a3 solute carrier family 39 member 3 located_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:35169020) 		UniProt
Ensembl
RGD		 PMID:35169020 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:8,676,845...8,682,846
Ensembl chr 7:8,676,759...8,685,149 		JBrowse link
G Slc6a9 solute carrier family 6 member 9 is_active_in IDA PMID:15749988 SynGO PMID:15749988 RGD:13702293 NCBI chr 5:131,374,562...131,408,733
Ensembl chr 5:131,374,542...131,408,728 		JBrowse link
G Snap47 synaptosome associated protein 47 is_active_in IDA PMID:28751858 SynGO PMID:28751858 RGD:13702396 NCBI chr10:44,192,886...44,234,435
Ensembl chr10:44,191,218...44,234,424 		JBrowse link
G Stxbp5 syntaxin binding protein 5 is_active_in ISO
IEA 		(PMID:18936251)
GO_REF:0000107 		RGD
Ensembl		 PMID:18936251 GO_REF:0000107 NCBI chr 1:4,182,489...4,335,290
Ensembl chr 1:4,185,529...4,335,101 		JBrowse link
G Sumo2 small ubiquitin-like modifier 2 is_active_in ISO (PMID:37009224) RGD PMID:37009224 NCBI chr10:101,270,899...101,283,458
Ensembl chr10:100,686,797...100,784,513
Ensembl chr 5:100,686,797...100,784,513 		JBrowse link
G Synpr synaptoporin is_active_in IMP
IDA 		PMID:23312519 SynGO PMID:23312519 PMID:23312519 RGD:155230703, RGD:155230703 NCBI chr15:11,573,373...11,900,255
Ensembl chr15:11,574,231...11,900,243 		JBrowse link
G Syt1 synaptotagmin 1 is_active_in IDA PMID:7298720 SynGO PMID:7298720 RGD:13702422 NCBI chr 7:43,813,204...44,358,020
Ensembl chr 7:43,815,785...44,357,803 		JBrowse link
G Syt12 synaptotagmin 12 is_active_in
located_in 		ISO
IEA 		(PMID:23739973)
GO_REF:0000107 		RGD
Ensembl		 PMID:23739973 GO_REF:0000107 NCBI chr 1:201,729,307...201,760,192
Ensembl chr 1:201,730,371...201,759,609 		JBrowse link
G Syt7 synaptotagmin 7 is_active_in IDA
IEP 		PMID:11395007 SynGO PMID:11395007 PMID:11395007 RGD:634203, RGD:634203 NCBI chr 1:207,031,359...207,093,787
Ensembl chr 1:207,031,592...207,089,026 		JBrowse link
G Syt9 synaptotagmin 9 is_active_in ISO (PMID:17521570) RGD PMID:17521570 NCBI chr 1:161,275,882...161,456,384
Ensembl chr 1:161,275,734...161,455,007 		JBrowse link
G Tnr tenascin R is_active_in IDA PMID:11598921 SynGO PMID:11598921 RGD:13702357 NCBI chr13:71,751,714...72,172,731
Ensembl chr13:72,091,585...72,167,641 		JBrowse link
G Unc13b unc-13 homolog B is_active_in ISO (PMID:19700493) RGD PMID:19700493 NCBI chr 5:57,288,999...57,504,110
Ensembl chr 5:57,289,227...57,502,926 		JBrowse link
G Vamp7 vesicle-associated membrane protein 7 is_active_in IDA
IEP 		PMID:14596849 SynGO PMID:14596849 PMID:14596849 RGD:13702238, RGD:13702238 NCBI chr12:16,728,486...16,764,261
Ensembl chr12:16,728,524...16,764,097 		JBrowse link
G Vti1a vesicle transport through interaction with t-SNAREs 1A is_active_in IDA
IEP 		PMID:10908612
PMID:12067063 		SynGO PMID:10908612 PMID:12067063 PMID:12067063 RGD:634537, RGD:1299316, RGD:1299316 NCBI chr 1:254,356,343...254,661,854
Ensembl chr 1:254,356,429...254,661,852 		JBrowse link
G Ywhaz tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta is_active_in ISO
IEA 		(PMID:22124272)
GO_REF:0000107 		RGD
Ensembl		 PMID:22124272 GO_REF:0000107 NCBI chr 7:67,941,353...67,963,651
Ensembl chr 7:67,940,017...67,963,668 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21350
    cellular anatomical structure 21054
      cell junction 2607
        synapse 2002
          neuron to neuron synapse 555
            hippocampal mossy fiber to CA3 synapse 70
paths to the root