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ONTOLOGY REPORT - ANNOTATIONS


Term:9+0 non-motile cilium
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Accession:GO:0097731 term browser browse the term
Definition:A non-motile cilium where the axoneme has a ring of nine outer microtubule doublets but no central microtubules (and is therefore called a 9+0 axoneme).
Comment:This type of cilia may be present in solitary (authentic primary cilia in many cell types) or in multiple copies (e.g. in Grueneberg ganglion neurons).
Synonyms:exact_synonym: 9+0 immotile cilium
 narrow_synonym: primary cilium


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9+0 non-motile cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CUNH1orf115 chromosome unknown C1orf115 homolog located_in ISO (PMID:29257953) GO_Central PMID:29257953 NCBI chrNW_004936650:1,575,098...1,586,515 JBrowse link
G CUNH4orf47 chromosome unknown C4orf47 homolog located_in ISO (PMID:29257953) GO_Central PMID:29257953 NCBI chrNW_004936554:3,908,570...3,925,957 JBrowse link
G Dynll2 dynein light chain LC8-type 2 located_in ISO (PMID:29257953) GO_Central PMID:29257953 NCBI chrNW_004936490:4,968,806...4,977,691 JBrowse link
G Ift80 intraflagellar transport 80 ISO (MGI:5807019|PMID:26996322) MGI PMID:26996322 MGI:5807019 NCBI chrNW_004936708:238,302...362,537 JBrowse link
G Iftap intraflagellar transport associated protein ISO (MGI:5807035|PMID:26703212) MGI PMID:26703212 MGI:5807035 NCBI chrNW_004936533:1,746,762...1,805,191 JBrowse link
G Pkhd1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin ISO (MGI:5604763|PMID:24586199) MGI PMID:24586199 MGI:5604763 NCBI chrNW_004936476:8,730,766...9,160,102 JBrowse link
G Smo smoothened, frizzled class receptor ISO (MGI:5807019|PMID:26996322) MGI PMID:26996322 MGI:5807019 NCBI chrNW_004936579:5,893,064...5,917,021 JBrowse link
G Ttll4 tubulin tyrosine ligase like 4 ISO (MGI:3771321|PMID:17499049) MGI PMID:17499049 MGI:3771321 NCBI chrNW_004936569:1,153,376...1,201,704 JBrowse link
G Ttll5 tubulin tyrosine ligase like 5 ISO (MGI:3771321|PMID:17499049) MGI PMID:17499049 MGI:3771321 NCBI chrNW_004936488:4,723,314...4,983,926 JBrowse link
G Ttll6 tubulin tyrosine ligase like 6 ISO (MGI:3771321|PMID:17499049) MGI PMID:17499049 MGI:3771321 NCBI chrNW_004936490:12,625,977...12,652,318 JBrowse link
G Ttll7 tubulin tyrosine ligase like 7 ISO (MGI:3771321|PMID:17499049) MGI PMID:17499049 MGI:3771321 NCBI chrNW_004936608:1,534,847...1,675,997 JBrowse link
G Tulp3 TUB like protein 3 part_of ISO (PMID:20889716) MGI PMID:20889716 NCBI chrNW_004936606:3,209,170...3,278,809 JBrowse link
cone photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guca1a guanylate cyclase activator 1A located_in ISO (PMID:9620085) UniProt PMID:9620085 NCBI chrNW_004936476:17,690,484...17,701,288 JBrowse link
G Guca1b guanylate cyclase activator 1B located_in ISO (PMID:9620085) UniProt PMID:9620085 NCBI chrNW_004936476:17,679,505...17,688,970 JBrowse link
G Rd3 RD3 regulator of GUCY2D ISO (MGI:4867355|PMID:21078983) UniProt PMID:21078983 MGI:4867355 NCBI chrNW_004936557:1,852,996...1,873,070 JBrowse link
G Tmem237 transmembrane protein 237 ISO (MGI:4830641|PMID:20375344) MGI PMID:20375344 MGI:4830641 NCBI chrNW_004936726:872,368...892,185 JBrowse link
photoreceptor cell cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1a4 ATPase Na+/K+ transporting subunit alpha 4 located_in ISO (PMID:26373354) ARUK-UCL PMID:26373354 NCBI chrNW_004936740:445,952...478,580 JBrowse link
G Cfap410 cilia and flagella associated protein 410 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004936500:82,702...90,525 JBrowse link
G Fam161a FAM161 centrosomal protein A ISO (MGI:5438885|PMID:22791751) UniProt PMID:22791751 MGI:5438885 NCBI chrNW_004936491:7,202,877...7,221,493 JBrowse link
G Ift52 intraflagellar transport 52 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004936530:2,965,587...3,003,758 JBrowse link
G Pex6 peroxisomal biogenesis factor 6 located_in ISO (MGI:5816430|PMID:26593283)
(PMID:26593283)
UniProt PMID:26593283 MGI:5816430 NCBI chrNW_004936476:16,948,137...16,963,601 JBrowse link
G Rp1 RP1 axonemal microtubule associated ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004936496:1,396,838...1,411,082 JBrowse link
G Sdccag8 SHH signaling and ciliogenesis regulator SDCCAG8 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004936526:7,202,147...7,431,455 JBrowse link
photoreceptor connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 ISO (MGI:3774983|PMID:17906286) MGI PMID:17906286 MGI:3774983 NCBI chrNW_004936469:8,653,031...9,209,840 JBrowse link
G Arl3 ADP ribosylation factor like GTPase 3 located_in ISO (PMID:12417528) UniProt PMID:12417528 NCBI chrNW_004936600:3,190,212...3,229,831 JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 ISO (MGI:5525015|PMID:23943788) MGI PMID:23943788 MGI:5525015 NCBI chrNW_004936471:31,962,500...32,019,516 JBrowse link
G Cep290 centrosomal protein 290 ISO (MGI:3624140|PMID:16632484), (MGI:3653539|PMID:16682973), (MGI:5525015|PMID:23943788) UniProt PMID:16632484 PMID:16682973 PMID:23943788 MGI:3624140 MGI:3653539 MGI:5525015 NCBI chrNW_004936507:5,223,756...5,305,392 JBrowse link
G Cetn1 centrin 1 ISO (MGI:3525432|PMID:15347651), (MGI:6393223|PMID:30120214) MGI PMID:15347651 PMID:30120214 MGI:3525432 MGI:6393223 NCBI chrNW_004936550:102,360...103,032 JBrowse link
G Cetn2 centrin 2 ISO (MGI:3525432|PMID:15347651) MGI PMID:15347651 MGI:3525432 NCBI chrNW_004936714:274,098...279,177 JBrowse link
G Cetn3 centrin 3 ISO (MGI:3525432|PMID:15347651), (MGI:5303017|PMID:22031837), (MGI:5588761|PMID:24833722) MGI PMID:15347651 PMID:22031837 PMID:24833722 MGI:3525432 MGI:5303017 MGI:5588761 NCBI chrNW_004936469:8,501,572...8,516,722 JBrowse link
G Cfap410 cilia and flagella associated protein 410 ISO (MGI:5770162|PMID:26974433) UniProt PMID:26974433 MGI:5770162 NCBI chrNW_004936500:82,702...90,525 JBrowse link
G Fam161a FAM161 centrosomal protein A located_in ISO PMID:22940612
(PMID:22940612)
(MGI:5438885|PMID:22791751), (MGI:5442623|PMID:22940612), (MGI:5588761|PMID:24833722)
UniProt PMID:22791751 PMID:22940612 PMID:24833722 MGI:5438885 MGI:5442623 MGI:5588761 RGD:8553427 NCBI chrNW_004936491:7,202,877...7,221,493 JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO (MGI:3757777|PMID:17881533) MGI PMID:17881533 MGI:3757777 NCBI chrNW_004936529:1,735,258...1,740,297 JBrowse link
G Ift122 intraflagellar transport 122 ISO (MGI:3839506|PMID:19208653) UniProt PMID:19208653 MGI:3839506 NCBI chrNW_004936602:908,034...956,634 JBrowse link
G Ift140 intraflagellar transport 140 ISO (MGI:4460838|PMID:20368623), (MGI:5604762|PMID:24619649) MGI PMID:20368623 PMID:24619649 MGI:4460838 MGI:5604762 NCBI chrNW_004936694:2,344,448...2,419,396 JBrowse link
G Ift20 intraflagellar transport 20 ISO (MGI:5317282|PMID:21307337) MGI PMID:21307337 MGI:5317282 NCBI chrNW_004936538:4,484,484...4,491,688 JBrowse link
G Ift52 intraflagellar transport 52 ISO (MGI:4460838|PMID:20368623) MGI PMID:20368623 MGI:4460838 NCBI chrNW_004936530:2,965,587...3,003,758 JBrowse link
G Ift57 intraflagellar transport 57 ISO (MGI:4460838|PMID:20368623) MGI PMID:20368623 MGI:4460838 NCBI chrNW_004936645:1,471,393...1,524,193 JBrowse link
G Ift88 intraflagellar transport 88 ISO (MGI:3839506|PMID:19208653), (MGI:4460838|PMID:20368623) MGI PMID:19208653 PMID:20368623 MGI:3839506 MGI:4460838 NCBI chrNW_004936720:1,041,216...1,168,725 JBrowse link
G Iqcb1 IQ motif containing B1 located_in ISO (MGI:3763297|PMID:15723066)
(PMID:15723066)
HGNC-UCL PMID:15723066 MGI:3763297 NCBI chrNW_004936536:8,164,120...8,213,690 JBrowse link
G Kiaa1549 KIAA1549 ortholog ISO (MGI:6393223|PMID:30120214) UniProt PMID:30120214 MGI:6393223 NCBI chrNW_004936592:3,132,166...3,215,835 JBrowse link
G Kif17 kinesin family member 17 ISO (MGI:4353477|PMID:19384852) MGI PMID:19384852 MGI:4353477 NCBI chrNW_004936474:6,598,641...6,642,491 JBrowse link
G Kif3a kinesin family member 3A ISO (MGI:3839506|PMID:19208653) UniProt PMID:19208653 MGI:3839506 NCBI chrNW_004936647:2,461,017...2,502,550 JBrowse link
G Kifap3 kinesin associated protein 3 ISO (MGI:4353477|PMID:19384852) MGI PMID:19384852 MGI:4353477 NCBI chrNW_004936481:16,664,025...16,777,440 JBrowse link
G Lca5 lebercilin LCA5 located_in ISO PMID:17546029
(PMID:21606596)
(MGI:5050784|PMID:21606596)
UniProt PMID:17546029 PMID:21606596 MGI:5050784 RGD:14397561 NCBI chrNW_004936510:10,652,378...10,702,761 JBrowse link
G Mak male germ cell associated kinase ISO (MGI:5298333|PMID:21148103) MGI PMID:21148103 MGI:5298333 NCBI chrNW_004936534:2,170,853...2,239,647 JBrowse link
G Myo7a myosin VIIA ISO (MGI:1343017|PMID:10414956) MGI PMID:10414956 MGI:1343017 NCBI chrNW_004936498:5,758,572...5,824,526 JBrowse link
G Nphp4 nephrocystin 4 ISO (MGI:4867588|PMID:21078623) MGI PMID:21078623 MGI:4867588 NCBI chrNW_004936623:802,152...904,198 JBrowse link
G Rp1 RP1 axonemal microtubule associated part_of ISO (MGI:2156902|PMID:11773008), (MGI:2676521|PMID:14507858)
(PMID:11767049)
UniProt
MGI
PMID:11767049 PMID:11773008 PMID:14507858 MGI:2156902 MGI:2676521 NCBI chrNW_004936496:1,396,838...1,411,082 JBrowse link
G Rp1l1 RP1 like 1 ISO (MGI:4353917|PMID:19657028) UniProt PMID:19657028 MGI:4353917 NCBI chrNW_004936675:2,527,406...2,564,464 JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator ISO (MGI:1354839|PMID:10725384) MGI PMID:10725384 MGI:1354839 NCBI chrNW_004936502:5,163,164...5,212,940 JBrowse link
G Rpgrip1 RPGR interacting protein 1 ISO (MGI:5608598|PMID:25398945) UniProt PMID:25398945 MGI:5608598 NCBI chrNW_004936880:440,900...511,503 JBrowse link
G Rpgrip1l RPGRIP1 like ISO RGD PMID:17558407 RGD:11537356 NCBI chrNW_004936475:6,219,187...6,321,612 JBrowse link
G Septin2 septin 2 located_in ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chrNW_004936745:518,650...555,187 JBrowse link
G Spata7 spermatogenesis associated 7 ISO (MGI:5608598|PMID:25398945) UniProt PMID:25398945 MGI:5608598 NCBI chrNW_004936488:15,878,167...15,911,301 JBrowse link
G Sptbn5 spectrin beta, non-erythrocytic 5 part_of ISO (PMID:23704327) MGI PMID:23704327 NCBI chrNW_004936471:5,154,294...5,195,083 JBrowse link
G Tbcc tubulin folding cofactor C located_in ISO (PMID:12417528) UniProt PMID:12417528 NCBI chrNW_004936476:17,145,956...17,147,299 JBrowse link
G Tmem237 transmembrane protein 237 ISO (MGI:4830641|PMID:20375344) MGI PMID:20375344 MGI:4830641 NCBI chrNW_004936726:872,368...892,185 JBrowse link
G Topors TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase located_in ISO (MGI:4939557|PMID:21159800)
(PMID:21159800)
BHF-UCL PMID:21159800 MGI:4939557 NCBI chrNW_004936524:1,219,101...1,229,937 JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 ISO (MGI:2677624|PMID:14520415) BHF-UCL PMID:14520415 MGI:2677624 NCBI chrNW_004936488:16,258,247...16,306,077 JBrowse link
G Ush1g USH1 protein network component sans ISO (MGI:3774983|PMID:17906286) MGI PMID:17906286 MGI:3774983 NCBI chrNW_004936594:258,115...262,739 JBrowse link
G Ush2a usherin colocalizes_with ISO (MGI:3774983|PMID:17906286), (MGI:4950337|PMID:21212183) RGD
MGI
PMID:16434480 PMID:17906286 PMID:21212183 MGI:3774983 MGI:4950337 RGD:1600128 NCBI chrNW_004936628:2,123,917...2,859,958 JBrowse link
G Wdr19 WD repeat domain 19 ISO (MGI:3839506|PMID:19208653) UniProt PMID:19208653 MGI:3839506 NCBI chrNW_004936482:6,863,592...6,937,810 JBrowse link
G Whrn whirlin colocalizes_with ISO (MGI:3774983|PMID:17906286), (MGI:4950337|PMID:21212183) RGD
MGI
PMID:16434480 PMID:17906286 PMID:21212183 MGI:3774983 MGI:4950337 RGD:1600128 NCBI chrNW_004936487:3,668,465...3,748,234 JBrowse link
photoreceptor disc membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin located_in ISO (PMID:25664179) UniProt PMID:25664179 NCBI chrNW_004936602:896,730...901,480 JBrowse link
G Sptbn5 spectrin beta, non-erythrocytic 5 part_of ISO (PMID:23704327) MGI PMID:23704327 NCBI chrNW_004936471:5,154,294...5,195,083 JBrowse link
photoreceptor distal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004936560:2,881,631...3,057,256 JBrowse link
G Cep290 centrosomal protein 290 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004936507:5,223,756...5,305,392 JBrowse link
G Nphp4 nephrocystin 4 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004936623:802,152...904,198 JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004936502:5,163,164...5,212,940 JBrowse link
G Rpgrip1 RPGR interacting protein 1 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004936880:440,900...511,503 JBrowse link
G Spata7 spermatogenesis associated 7 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004936488:15,878,167...15,911,301 JBrowse link
photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:4461813|PMID:20592197) MGI PMID:20592197 MGI:4461813 NCBI chrNW_004936560:2,881,631...3,057,256 JBrowse link
G Arr3 arrestin 3 ISO (MGI:1354839|PMID:10725384), (MGI:3616100|PMID:12486395) MGI PMID:10725384 PMID:12486395 MGI:1354839 MGI:3616100 NCBI chrNW_004936762:1,194,251...1,207,914 JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 ISO (MGI:5525015|PMID:23943788) MGI PMID:23943788 MGI:5525015 NCBI chrNW_004936471:31,962,500...32,019,516 JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 ISO (MGI:5525015|PMID:23943788) MGI PMID:23943788 MGI:5525015 NCBI chrNW_004936662:1,081,237...1,116,719 JBrowse link
G Bsg basigin (Ok blood group) ISO (MGI:6436439|PMID:25957687) UniProt PMID:25957687 MGI:6436439 NCBI chrNW_004936588:181,688...189,795 JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F ISO RGD PMID:11526344 RGD:632484 NCBI chrNW_004936721:1,078,570...1,106,153 JBrowse link
G Cep250 centrosomal protein 250 ISO (MGI:6254746|PMID:28005958) UniProt PMID:28005958 MGI:6254746 NCBI chrNW_004936561:5,283,258...5,331,688 JBrowse link
G Cep290 centrosomal protein 290 ISO (MGI:5525015|PMID:23943788) MGI PMID:23943788 MGI:5525015 NCBI chrNW_004936507:5,223,756...5,305,392 JBrowse link
G Cerkl ceramide kinase like ISO (MGI:5571037|PMID:23142158) MGI PMID:23142158 MGI:5571037 NCBI chrNW_004936509:10,294,247...10,404,743 JBrowse link
G Cfap410 cilia and flagella associated protein 410 located_in ISO (PMID:27548899) UniProt PMID:27548899 NCBI chrNW_004936500:82,702...90,525 JBrowse link
G Cib2 calcium and integrin binding family member 2 ISO (MGI:5487486|PMID:23023331) UniProt PMID:23023331 MGI:5487486 NCBI chrNW_004936471:36,859,018...36,879,170 JBrowse link
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 ISO (MGI:1354839|PMID:10725384), (MGI:3527312|PMID:15634774), (MGI:4461813|PMID:20592197) MGI PMID:10725384 PMID:15634774 PMID:20592197 MGI:1354839 MGI:3527312 MGI:4461813 NCBI chrNW_004936482:14,091,343...14,107,793 JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 ISO (MGI:1355614|PMID:10813773), (MGI:3527312|PMID:15634774) MGI PMID:10813773 PMID:15634774 MGI:1355614 MGI:3527312 NCBI chrNW_004936744:1,499,431...1,537,784 JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 ISO (MGI:5587954|PMID:22183407) MGI PMID:22183407 MGI:5587954 NCBI chrNW_004936475:9,844,438...9,908,009 JBrowse link
G Cngb3 cyclic nucleotide gated channel subunit beta 3 ISO (MGI:3527312|PMID:15634774) MGI PMID:15634774 MGI:3527312 NCBI chrNW_004936544:1,166,896...1,305,339 JBrowse link
G Gnat1 G protein subunit alpha transducin 1 located_in ISO (PMID:2534964)
(MGI:3778702|PMID:18367617), (MGI:4461813|PMID:20592197), (MGI:6383261|PMID:31696965)
RGD
UniProt
MGI
PMID:2534964 PMID:10396627 PMID:11931744 PMID:18367617 PMID:20592197 PMID:31696965 MGI:3778702 MGI:4461813 MGI:6383261 RGD:1599009 RGD:6893629 NCBI chrNW_004936529:1,735,258...1,740,297 JBrowse link
G Gnat2 G protein subunit alpha transducin 2 located_in ISO (PMID:2534964) RGD
UniProt
PMID:2534964 PMID:17591908 RGD:2302146 NCBI chrNW_004936704:1,079,255...1,093,732 JBrowse link
G Gnb1 G protein subunit beta 1 ISO (MGI:3778702|PMID:18367617) MGI PMID:18367617 MGI:3778702 NCBI chrNW_004936737:1,518,855...1,554,926 JBrowse link
G Gnb5 G protein subunit beta 5 ISO (MGI:5507748|PMID:23555598) MGI PMID:23555598 MGI:5507748 NCBI chrNW_004936471:13,952,462...14,001,663 JBrowse link
G Gngt1 G protein subunit gamma transducin 1 ISO RGD PMID:10396627 PMID:11931744 RGD:1599009 RGD:6893629 NCBI chrNW_004936803:67,933...71,508 JBrowse link
G Grk1 G protein-coupled receptor kinase 1 ISO (MGI:5587954|PMID:22183407) MGI PMID:22183407 MGI:5587954 NCBI chrNW_004936472:152,202...165,134 JBrowse link
G Guca1a guanylate cyclase activator 1A ISO RGD PMID:9620085 RGD:1599354 NCBI chrNW_004936476:17,690,484...17,701,288 JBrowse link
G Guca1b guanylate cyclase activator 1B ISO RGD PMID:9620085 RGD:1599354 NCBI chrNW_004936476:17,679,505...17,688,970 JBrowse link
G Guca2b guanylate cyclase activator 2B ISO (MGI:5587954|PMID:22183407) MGI PMID:22183407 MGI:5587954 NCBI chrNW_004936474:23,632,836...23,634,330 JBrowse link
G Gucy2d guanylate cyclase 2D, retinal located_in ISO (PMID:7912093) UniProt PMID:7912093 NCBI chrNW_004936595:1,235,747...1,250,294 JBrowse link
G Hnf1a HNF1 homeobox A ISO (MGI:1334099|PMID:10090727) MGI PMID:10090727 MGI:1334099 NCBI chrNW_004936668:62,103...81,549 JBrowse link
G Ift140 intraflagellar transport 140 ISO (MGI:5604762|PMID:24619649) MGI PMID:24619649 MGI:5604762 NCBI chrNW_004936694:2,344,448...2,419,396 JBrowse link
G Ift20 intraflagellar transport 20 ISO (MGI:5317282|PMID:21307337) MGI PMID:21307337 MGI:5317282 NCBI chrNW_004936538:4,484,484...4,491,688 JBrowse link
G Inha inhibin subunit alpha ISO RGD PMID:7596220 RGD:2290440 NCBI chrNW_004936569:1,949,747...1,954,179 JBrowse link
G Iqcb1 IQ motif containing B1 ISO (MGI:3763297|PMID:15723066) HGNC-UCL PMID:15723066 MGI:3763297 NCBI chrNW_004936536:8,164,120...8,213,690 JBrowse link
G LOC101958197 regulator of G protein signaling 9 ISO (MGI:5507748|PMID:23555598) MGI PMID:23555598 MGI:5507748 NCBI chrNW_004936541:7,472,195...7,525,220 JBrowse link
G LOC101965031 protocadherin-15 located_in ISO (MGI:3722521|PMID:14570705)
(PMID:14570705)
MGI
HGNC-UCL
PMID:14570705 MGI:3722521 NCBI chrNW_004936910:233,800...602,145 JBrowse link
G LOC101967789 SH3 and multiple ankyrin repeat domains protein 2 ISO (MGI:5306573|PMID:19299912) CACAO PMID:19299912 MGI:5306573 NCBI chrNW_004936599:196,512...463,749 JBrowse link
G Lyar Ly1 antibody reactive ISO (MGI:6107438|PMID:25735755) UniProt PMID:25735755 MGI:6107438 NCBI chrNW_004936477:16,934,401...16,958,722 JBrowse link
G Mak male germ cell associated kinase ISO (MGI:5298333|PMID:21148103) MGI PMID:21148103 MGI:5298333 NCBI chrNW_004936534:2,170,853...2,239,647 JBrowse link
G Map1a microtubule associated protein 1A ISO (MGI:5587952|PMID:24664738) MGI PMID:24664738 MGI:5587952 NCBI chrNW_004936471:6,685,565...6,706,860 JBrowse link
G Map1b microtubule associated protein 1B ISO (MGI:5587952|PMID:24664738) MGI PMID:24664738 MGI:5587952 NCBI chrNW_004936549:4,266,371...4,371,579 JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase ISO RGD PMID:11861639 RGD:1299193 NCBI chrNW_004936783:607,425...704,879 JBrowse link
G Myo3b myosin IIIB ISO (MGI:4352610|PMID:19332056) MGI PMID:19332056 MGI:4352610 NCBI chrNW_004936509:615,958...1,074,742 JBrowse link
G Myo5a myosin VA ISO (MGI:3047015|PMID:14978221) MGI PMID:14978221 MGI:3047015 NCBI chrNW_004936471:14,105,832...14,257,386 JBrowse link
G Myo7a myosin VIIA NOT
located_in
NOT|located_in
ISO PMID:8842737
(PMID:8842737)
(MGI:81971|PMID:8842737)
UniProt PMID:8842737 MGI:81971 RGD:8553559 NCBI chrNW_004936498:5,758,572...5,824,526 JBrowse link
G Myrip myosin VIIA and Rab interacting protein ISO (MGI:2180422|PMID:11964381) UniProt PMID:11964381 MGI:2180422 NCBI chrNW_004936473:28,921,837...29,252,737 JBrowse link
G Nup42 nucleoporin 42 ISO (MGI:5587954|PMID:22183407) MGI PMID:22183407 MGI:5587954 NCBI chrNW_004936478:345,997...362,501 JBrowse link
G Ocrl OCRL inositol polyphosphate-5-phosphatase located_in ISO (PMID:22543976) UniProt PMID:22543976 NCBI chrNW_004936479:1,955,362...2,011,608 JBrowse link
G Opn1sw opsin 1, short wave sensitive ISO (MGI:1354839|PMID:10725384), (MGI:1355614|PMID:10813773), (MGI:2654998|PMID:12651948), (MGI:4352610|PMID:19332056), (MGI:5488667|PMID:23351594), (MGI:5494796|PMID:23386608), (MGI:5587954|PMID:22183407), (MGI:6305433|PMID:26420485) RGD
MGI
PMID:10725384 PMID:10813773 PMID:12651948 PMID:19332056 PMID:20209167 PMID:22183407 PMID:23351594 PMID:23386608 PMID:26420485 MGI:1354839 MGI:1355614 MGI:2654998 MGI:4352610 MGI:5488667 MGI:5494796 MGI:5587954 MGI:6305433 RGD:6893562 NCBI chrNW_004936479:15,696,063...15,702,311 JBrowse link
G Pcare photoreceptor cilium actin regulator ISO (MGI:5636574|PMID:25616964) MGI PMID:25616964 MGI:5636574 NCBI chrNW_004936493:3,768,032...3,781,511 JBrowse link
G Pdc phosducin ISO (MGI:3778702|PMID:18367617) MGI PMID:18367617 MGI:3778702 NCBI chrNW_004936481:3,974,831...3,995,431 JBrowse link
G Pde6b phosphodiesterase 6B ISO (MGI:5587954|PMID:22183407) MGI PMID:22183407 MGI:5587954 NCBI chrNW_004936477:22,418,037...22,472,251 JBrowse link
G Prcd photoreceptor disc component ISO (MGI:5819338|PMID:23672200) HGNC PMID:23672200 MGI:5819338 NCBI chrNW_004936594:1,615,165...1,628,455 JBrowse link
G Prkca protein kinase C alpha ISO (MGI:1355614|PMID:10813773) MGI PMID:10813773 MGI:1355614 NCBI chrNW_004936541:6,231,604...6,488,201 JBrowse link
G Prom1 prominin 1 ISO (MGI:3838023|PMID:19228982) UniProt PMID:19228982 MGI:3838023 NCBI chrNW_004936477:11,878,261...12,017,228 JBrowse link
G Prph peripherin ISO (MGI:5587954|PMID:22183407) MGI PMID:22183407 MGI:5587954 NCBI chrNW_004936512:7,046,275...7,050,958 JBrowse link
G Prph2 peripherin 2 ISO (MGI:5587954|PMID:22183407), (MGI:5905515|PMID:28053051), (MGI:6305433|PMID:26420485) MGI PMID:22183407 PMID:26420485 PMID:28053051 MGI:5587954 MGI:5905515 MGI:6305433 NCBI chrNW_004936476:17,159,756...17,174,226 JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 ISO (MGI:2429331|PMID:12355421) MGI PMID:12355421 MGI:2429331 NCBI chrNW_004936487:10,745,465...10,758,812 JBrowse link
G Ptprk protein tyrosine phosphatase receptor type K ISO (MGI:3794228|PMID:18308476) MGI PMID:18308476 MGI:3794228 NCBI chrNW_004936639:1,279,795...1,683,944 JBrowse link
G Rab27a RAB27A, member RAS oncogene family ISO (MGI:2180422|PMID:11964381) UniProt PMID:11964381 MGI:2180422 NCBI chrNW_004936471:16,738,204...16,815,561 JBrowse link
G Rapgef4 Rap guanine nucleotide exchange factor 4 ISO RGD PMID:19883736 RGD:2314691 NCBI chrNW_004936509:2,722,279...3,006,436 JBrowse link
G Rd3 RD3 regulator of GUCY2D ISO (MGI:6368063|PMID:29515371) UniProt PMID:29515371 MGI:6368063 NCBI chrNW_004936557:1,852,996...1,873,070 JBrowse link
G Rgs9bp regulator of G protein signaling 9 binding protein ISO (MGI:5507748|PMID:23555598) MGI PMID:23555598 MGI:5507748 NCBI chrNW_004936570:3,042,233...3,043,884 JBrowse link
G Rho rhodopsin part_of ISO (PMID:11767049), (PMID:23704327)
(MGI:1354839|PMID:10725384), (MGI:2654998|PMID:12651948), (MGI:4352610|PMID:19332056), (MGI:4461813|PMID:20592197), (MGI:4949555|PMID:21444805), (MGI:4950337|PMID:21212183), (MGI:5462139|PMID:22869374), (MGI:5467890|PMID:23178122), (MGI:5488667|PMID:23351594), (MGI:5525015|PMID:23943788), (MGI:5587954|PMID:22183407), (MGI:5607451|PMID:25224828), (MGI:6305433|PMID:26420485)
RGD
MGI
PMID:8814134 PMID:10725384 PMID:11767049 PMID:12651948 PMID:19332056 PMID:20592197 PMID:21212183 PMID:21444805 PMID:22183407 PMID:22869374 PMID:23178122 PMID:23351594 PMID:23704327 PMID:23943788 PMID:25224828 PMID:26420485 MGI:1354839 MGI:2654998 MGI:4352610 MGI:4461813 MGI:4949555 MGI:4950337 MGI:5462139 MGI:5467890 MGI:5488667 MGI:5525015 MGI:5587954 MGI:5607451 MGI:6305433 RGD:6893595 NCBI chrNW_004936602:896,730...901,480 JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:4461813|PMID:20592197), (MGI:5587954|PMID:22183407), (MGI:6305433|PMID:26420485) MGI PMID:20592197 PMID:22183407 PMID:26420485 MGI:4461813 MGI:5587954 MGI:6305433 NCBI chrNW_004936581:642,322...644,286 JBrowse link
G Rp1 RP1 axonemal microtubule associated ISO (MGI:2676521|PMID:14507858), (MGI:3629826|PMID:15269252) UniProt PMID:14507858 PMID:15269252 MGI:2676521 MGI:3629826 NCBI chrNW_004936496:1,396,838...1,411,082 JBrowse link
G Rp1l1 RP1 like 1 ISO (MGI:4353917|PMID:19657028) UniProt PMID:19657028 MGI:4353917 NCBI chrNW_004936675:2,527,406...2,564,464 JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (PMID:12140192) UniProt PMID:12140192 NCBI chrNW_004936502:5,163,164...5,212,940 JBrowse link
G Sag S-antigen visual arrestin located_in ISO (PMID:3720866)
(MGI:5462139|PMID:22869374)
RGD
UniProt
MGI
PMID:3720866 PMID:10396627 PMID:22869374 MGI:5462139 RGD:6893629 NCBI chrNW_004936525:3,932,118...3,965,651 JBrowse link
G Tulp1 TUB like protein 1 ISO (MGI:4397555|PMID:19218615) UniProt PMID:19218615 MGI:4397555 NCBI chrNW_004936476:23,744,707...23,757,002 JBrowse link
G Ush1c USH1 protein network component harmonin ISO (MGI:2679149|PMID:14578428), (MGI:3774983|PMID:17906286) RGD
MGI
PMID:14578428 PMID:17906286 MGI:2679149 MGI:3774983 RGD:1303964 NCBI chrNW_004936528:1,552,175...1,594,740 JBrowse link
photoreceptor outer segment membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdhr1 cadherin related family member 1 ISO (MGI:3814988|PMID:18654668) BHF-UCL PMID:18654668 MGI:3814988 NCBI chrNW_004936767:805,910...829,838 JBrowse link
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 ISO (MGI:3814988|PMID:18654668) BHF-UCL PMID:18654668 MGI:3814988 NCBI chrNW_004936482:14,091,343...14,107,793 JBrowse link
G Gnb1 G protein subunit beta 1 ISO RGD PMID:11931744 RGD:1599009 NCBI chrNW_004936737:1,518,855...1,554,926 JBrowse link
G Gucy2d guanylate cyclase 2D, retinal located_in ISO PMID:9153227
(MGI:5049799|PMID:21598940)
UniProt PMID:9153227 PMID:21598940 MGI:5049799 RGD:1599625 NCBI chrNW_004936595:1,235,747...1,250,294 JBrowse link
G Phlpp2 PH domain and leucine rich repeat protein phosphatase 2 ISO RGD PMID:20089132 RGD:5131540 NCBI chrNW_004936475:22,074,620...22,138,308 JBrowse link
G Prcd photoreceptor disc component located_in ISO (MGI:5812604|PMID:27613864), (MGI:6271388|PMID:27509380)
(PMID:27613864)
UniProt PMID:27509380 PMID:27613864 MGI:5812604 MGI:6271388 NCBI chrNW_004936594:1,615,165...1,628,455 JBrowse link
G Prom1 prominin 1 located_in ISO (PMID:18654668) BHF-UCL PMID:18654668 NCBI chrNW_004936477:11,878,261...12,017,228 JBrowse link
G Prph peripherin ISO (MGI:1343017|PMID:10414956) MGI PMID:10414956 MGI:1343017 NCBI chrNW_004936512:7,046,275...7,050,958 JBrowse link
G Rdh11 retinol dehydrogenase 11 NOT ISO (MGI:3584215|PMID:15790565) MGI PMID:15790565 MGI:3584215 NCBI chrNW_004936495:11,065,946...11,082,104 JBrowse link
G Rho rhodopsin located_in ISO (PMID:19934218) RGD
UniProt
PMID:2209754 PMID:19934218 RGD:6893561 NCBI chrNW_004936602:896,730...901,480 JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:3814988|PMID:18654668) BHF-UCL PMID:18654668 MGI:3814988 NCBI chrNW_004936581:642,322...644,286 JBrowse link
photoreceptor proximal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep290 centrosomal protein 290 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004936507:5,223,756...5,305,392 JBrowse link
rod photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1a4 ATPase Na+/K+ transporting subunit alpha 4 located_in ISO (PMID:26373354) ARUK-UCL PMID:26373354 NCBI chrNW_004936740:445,952...478,580 JBrowse link
G Cep290 centrosomal protein 290 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004936507:5,223,756...5,305,392 JBrowse link
G Gucy2f guanylate cyclase 2F, retinal ISO (MGI:4867355|PMID:21078983) UniProt PMID:21078983 MGI:4867355 NCBI chrNW_004936499:5,653,384...5,752,732 JBrowse link
G Rd3 RD3 regulator of GUCY2D ISO (MGI:4867355|PMID:21078983) UniProt PMID:21078983 MGI:4867355 NCBI chrNW_004936557:1,852,996...1,873,070 JBrowse link
G Spata7 spermatogenesis associated 7 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004936488:15,878,167...15,911,301 JBrowse link
G Tmem237 transmembrane protein 237 ISO (MGI:4830641|PMID:20375344) MGI PMID:20375344 MGI:4830641 NCBI chrNW_004936726:872,368...892,185 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 12184
    cellular anatomical entity 12039
      organelle 9485
        cilium 577
          non-motile cilium 148
            9+0 non-motile cilium 115
              photoreceptor cell cilium + 103
Path 2
Term Annotations click to browse term
  cellular_component 12184
    cellular anatomical entity 12039
      cell projection 2051
        plasma membrane bounded cell projection 2024
          cilium 577
            non-motile cilium 148
              9+0 non-motile cilium 115
                photoreceptor cell cilium + 103
paths to the root