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ONTOLOGY REPORT - ANNOTATIONS

Term:9+0 non-motile cilium
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Accession:GO:0097731 term browser browse the term
Definition:A non-motile cilium where the axoneme has a ring of nine outer microtubule doublets but no central microtubules (and is therefore called a 9+0 axoneme).
Comment:This type of cilia may be present in solitary (authentic primary cilia in many cell types) or in multiple copies (e.g. in Grueneberg ganglion neurons).
Synonyms:exact_synonym: 9+0 immotile cilium
 narrow_synonym: primary cilium

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9+0 non-motile cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G 1700029J07Rik RIKEN cDNA 1700029J07 gene located_in ISO (PMID:29257953) GO_Central
MGI		 PMID:29257953 GO_REF:0000096 MGI:4834177 NCBI chr 8:45,939,196...45,975,488
Ensembl chr 8:45,953,606...45,975,440
Ensembl chr 8:45,953,606...45,975,440 		JBrowse link
G C130074G19Rik RIKEN cDNA C130074G19 gene located_in ISO (PMID:29257953) GO_Central
MGI		 PMID:29257953 GO_REF:0000096 MGI:4834177 NCBI chr 1:184,871,926...184,883,036
Ensembl chr 1:184,871,926...184,883,218 		JBrowse link
G Dynll2 dynein light chain LC8-type 2 located_in ISO (PMID:29257953) GO_Central
MGI		 PMID:29257953 GO_REF:0000096 MGI:4834177 NCBI chr11:87,979,525...88,003,817
Ensembl chr11:87,979,525...87,987,533 		JBrowse link
G Ift80 intraflagellar transport 80 part_of IDA (MGI:5807019|PMID:26996322) MGI PMID:26996322 MGI:5807019 NCBI chr 3:68,892,499...69,004,680
Ensembl chr 3:68,892,499...69,004,570 		JBrowse link
G Iftap intraflagellar transport associated protein is_active_in
located_in		 IBA
IDA		 (MGI:6201960|PMID:21873635)
(MGI:5807035|PMID:26703212)		 GO_Central
MGI		 PMID:21873635 PMID:26703212 MGI:5807035 MGI:6201960 NCBI chr 2:101,560,779...101,629,031
Ensembl chr 2:101,560,781...101,649,532 		JBrowse link
G Phyh phytanoyl-CoA hydroxylase located_in ISO (PMID:29257953) GO_Central
MGI		 PMID:29257953 GO_REF:0000096 MGI:4834177 NCBI chr 2:4,918,996...4,938,743
Ensembl chr 2:4,919,019...4,938,730 		JBrowse link
G Pkhd1 polycystic kidney and hepatic disease 1 located_in IDA (MGI:5604763|PMID:24586199) MGI PMID:24586199 MGI:5604763 NCBI chr 1:20,057,779...20,618,082
Ensembl chr 1:20,057,779...20,618,064 		JBrowse link
G Smo smoothened, frizzled class receptor part_of IDA (MGI:5807019|PMID:26996322) MGI PMID:26996322 MGI:5807019 NCBI chr 6:29,735,497...29,761,366
Ensembl chr 6:29,735,503...29,761,365 		JBrowse link
G Ttll4 tubulin tyrosine ligase-like family, member 4 part_of IDA (MGI:3771321|PMID:17499049) MGI PMID:17499049 MGI:3771321 NCBI chr 1:74,661,645...74,701,832
Ensembl chr 1:74,661,745...74,703,730 		JBrowse link
G Ttll5 tubulin tyrosine ligase-like family, member 5 part_of IDA (MGI:3771321|PMID:17499049) MGI PMID:17499049 MGI:3771321 NCBI chr12:85,824,693...86,053,760
Ensembl chr12:85,824,659...86,061,893 		JBrowse link
G Ttll6 tubulin tyrosine ligase-like family, member 6 part_of IDA (MGI:3771321|PMID:17499049) MGI PMID:17499049 MGI:3771321 NCBI chr11:96,124,457...96,166,182
Ensembl chr11:96,133,786...96,165,451 		JBrowse link
G Ttll7 tubulin tyrosine ligase-like family, member 7 part_of IDA (MGI:3771321|PMID:17499049) MGI PMID:17499049 MGI:3771321 NCBI chr 3:146,852,184...146,984,009
Ensembl chr 3:146,852,367...146,984,009 		JBrowse link
G Tulp3 tubby-like protein 3 part_of
located_in		 ISO (PMID:20889716) MGI
MGI		 PMID:20889716 GO_REF:0000008 MGI:2154458 NCBI chr 6:128,321,140...128,355,873
Ensembl chr 6:128,321,161...128,355,851 		JBrowse link
cone photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guca1a guanylate cyclase activator 1a (retina) located_in ISO
IDA		 (MGI:6437034|PMID:9620085) MGI
UniProt		 PMID:9620085 GO_REF:0000096 MGI:4834177 MGI:6437034 NCBI chr17:47,394,557...47,413,514
Ensembl chr17:47,394,558...47,400,584 		JBrowse link
G Guca1b guanylate cyclase activator 1B located_in ISO (PMID:9620085) UniProt
MGI		 PMID:9620085 GO_REF:0000096 MGI:4834177 NCBI chr17:47,384,694...47,392,967
Ensembl chr17:47,385,393...47,392,967 		JBrowse link
G Rd3 retinal degeneration 3 located_in IDA (MGI:4867355|PMID:21078983) UniProt PMID:21078983 MGI:4867355 NCBI chr 1:191,956,490...191,988,282
Ensembl chr 1:191,977,370...191,988,283 		JBrowse link
G Tmem237 transmembrane protein 237 located_in IDA (MGI:4830641|PMID:20375344) MGI PMID:20375344 MGI:4830641 NCBI chr 1:59,100,584...59,120,422
Ensembl chr 1:59,100,590...59,120,408 		JBrowse link
photoreceptor cell cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1a4 ATPase, Na+/K+ transporting, alpha 4 polypeptide located_in ISO (PMID:26373354) ARUK-UCL
MGI		 PMID:26373354 GO_REF:0000096 MGI:4834177 NCBI chr 1:172,223,508...172,258,424
Ensembl chr 1:172,223,513...172,258,414 		JBrowse link
G Cfap410 cilia and flagella associated protein 410 part_of IDA (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr10:77,978,530...77,985,438
Ensembl chr10:77,978,524...77,986,905 		JBrowse link
G Fam161a family with sequence similarity 161, member A located_in IDA (MGI:5438885|PMID:22791751) UniProt PMID:22791751 MGI:5438885 NCBI chr11:23,006,721...23,045,743
Ensembl chr11:23,007,531...23,030,788 		JBrowse link
G Ift52 intraflagellar transport 52 part_of IDA (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr 2:163,017,117...163,046,155
Ensembl chr 2:163,017,354...163,046,141 		JBrowse link
G Pex6 peroxisomal biogenesis factor 6 located_in ISO
IDA		 (PMID:26593283)
(MGI:5816430|PMID:26593283)		 UniProt
UniProt
MGI		 PMID:26593283 GO_REF:0000096 MGI:4834177 MGI:5816430 NCBI chr17:46,711,476...46,725,543
Ensembl chr17:46,711,463...46,725,541 		JBrowse link
G Rp1 retinitis pigmentosa 1 (human) part_of IDA (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr 1:4,115,673...4,409,266
Ensembl chr 1:3,999,557...4,409,241 		JBrowse link
G Sdccag8 serologically defined colon cancer antigen 8 part_of IDA (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr 1:176,814,660...177,020,438
Ensembl chr 1:176,814,660...177,020,437 		JBrowse link
photoreceptor connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 located_in IDA (MGI:3774983|PMID:17906286) MGI PMID:17906286 MGI:3774983 NCBI chr13:81,095,068...81,633,391
Ensembl chr13:81,095,068...81,633,154 		JBrowse link
G Arl3 ADP-ribosylation factor-like 3 located_in ISO (PMID:12417528) UniProt
MGI		 PMID:12417528 GO_REF:0000096 MGI:4834177 NCBI chr19:46,531,109...46,573,182
Ensembl chr19:46,531,096...46,573,198 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 (human) located_in IDA (MGI:5525015|PMID:23943788) MGI PMID:23943788 MGI:5525015 NCBI chr 9:59,321,966...59,353,508
Ensembl chr 9:59,321,990...59,353,508 		JBrowse link
G Cep290 centrosomal protein 290 located_in IDA (MGI:3624140|PMID:16632484), (MGI:3653539|PMID:16682973), (MGI:5525015|PMID:23943788) MGI PMID:16632484 PMID:16682973 PMID:23943788 MGI:3624140 MGI:3653539 MGI:5525015 NCBI chr10:100,487,548...100,575,671
Ensembl chr10:100,487,558...100,574,840 		JBrowse link
G Cetn1 centrin 1 located_in IDA (MGI:3525432|PMID:15347651), (MGI:6393223|PMID:30120214) MGI PMID:15347651 PMID:30120214 MGI:3525432 MGI:6393223 NCBI chr18:9,618,419...9,619,469
Ensembl chr18:9,615,524...9,619,478 		JBrowse link
G Cetn2 centrin 2 located_in IDA (MGI:3525432|PMID:15347651) MGI PMID:15347651 MGI:3525432 NCBI chr  X:72,913,565...72,918,344
Ensembl chr  X:72,913,532...72,918,411 		JBrowse link
G Cetn3 centrin 3 located_in IDA (MGI:3525432|PMID:15347651), (MGI:5303017|PMID:22031837), (MGI:5588761|PMID:24833722) MGI PMID:15347651 PMID:22031837 PMID:24833722 MGI:3525432 MGI:5303017 MGI:5588761 NCBI chr13:81,780,636...81,797,155
Ensembl chr13:81,783,077...81,797,155 		JBrowse link
G Cfap410 cilia and flagella associated protein 410 located_in IDA (MGI:5770162|PMID:26974433) UniProt PMID:26974433 MGI:5770162 NCBI chr10:77,978,530...77,985,438
Ensembl chr10:77,978,524...77,986,905 		JBrowse link
G D630045J12Rik RIKEN cDNA D630045J12 gene located_in IDA (MGI:6393223|PMID:30120214) UniProt PMID:30120214 MGI:6393223 NCBI chr 6:38,123,174...38,254,139
Ensembl chr 6:38,123,174...38,254,009 		JBrowse link
G Fam161a family with sequence similarity 161, member A located_in
is_active_in		 ISO
IBA
IDA		 (PMID:22940612)
(MGI:6201960|PMID:21873635)
(MGI:5438885|PMID:22791751), (MGI:5442623|PMID:22940612), (MGI:5588761|PMID:24833722)		 UniProt
GO_Central
MGI		 PMID:21873635 PMID:22791751 PMID:22940612 PMID:24833722 GO_REF:0000096 MGI:4417868 MGI:4834177 MGI:5438885 MGI:5442623 MGI:5588761 MGI:6201960 RGD:8553427 NCBI chr11:23,006,721...23,045,743
Ensembl chr11:23,007,531...23,030,788 		JBrowse link
G Gnat1 guanine nucleotide binding protein, alpha transducing 1 located_in IDA (MGI:3757777|PMID:17881533) MGI PMID:17881533 MGI:3757777 NCBI chr 9:107,674,437...107,679,634
Ensembl chr 9:107,674,474...107,679,712 		JBrowse link
G Ift122 intraflagellar transport 122 located_in IDA (MGI:3839506|PMID:19208653) UniProt PMID:19208653 MGI:3839506 NCBI chr 6:115,853,379...115,926,699
Ensembl chr 6:115,853,470...115,926,699 		JBrowse link
G Ift140 intraflagellar transport 140 located_in IDA (MGI:4460838|PMID:20368623), (MGI:5604762|PMID:24619649) MGI PMID:20368623 PMID:24619649 MGI:4460838 MGI:5604762 NCBI chr17:25,016,083...25,099,499
Ensembl chr17:25,016,085...25,099,495 		JBrowse link
G Ift20 intraflagellar transport 20 located_in IDA (MGI:5317282|PMID:21307337) MGI PMID:21307337 MGI:5317282 NCBI chr11:78,536,361...78,541,732
Ensembl chr11:78,536,361...78,541,737 		JBrowse link
G Ift52 intraflagellar transport 52 located_in IDA (MGI:4460838|PMID:20368623) MGI PMID:20368623 MGI:4460838 NCBI chr 2:163,017,117...163,046,155
Ensembl chr 2:163,017,354...163,046,141 		JBrowse link
G Ift57 intraflagellar transport 57 located_in IDA (MGI:4460838|PMID:20368623) MGI PMID:20368623 MGI:4460838 NCBI chr16:49,699,294...49,765,126
Ensembl chr16:49,699,233...49,765,126 		JBrowse link
G Ift88 intraflagellar transport 88 located_in IDA (MGI:3839506|PMID:19208653), (MGI:4460838|PMID:20368623) MGI PMID:19208653 PMID:20368623 MGI:3839506 MGI:4460838 NCBI chr14:57,424,064...57,517,936
Ensembl chr14:57,424,062...57,517,936 		JBrowse link
G Iqcb1 IQ calmodulin-binding motif containing 1 located_in ISO
IDA		 (PMID:15723066)
(MGI:3763297|PMID:15723066)		 HGNC-UCL
HGNC-UCL
MGI		 PMID:15723066 GO_REF:0000096 MGI:3763297 MGI:4834177 NCBI chr16:36,828,360...36,872,719
Ensembl chr16:36,828,385...36,872,721 		JBrowse link
G Kif17 kinesin family member 17 located_in IDA (MGI:4353477|PMID:19384852) MGI PMID:19384852 MGI:4353477 NCBI chr 4:138,262,251...138,301,973
Ensembl chr 4:138,250,435...138,301,967 		JBrowse link
G Kif3a kinesin family member 3A located_in IDA (MGI:3839506|PMID:19208653) UniProt PMID:19208653 MGI:3839506 NCBI chr11:53,565,701...53,604,248
Ensembl chr11:53,567,379...53,601,967 		JBrowse link
G Kifap3 kinesin-associated protein 3 located_in IDA (MGI:4353477|PMID:19384852) MGI PMID:19384852 MGI:4353477 NCBI chr 1:163,762,138...163,917,107
Ensembl chr 1:163,779,583...163,917,109 		JBrowse link
G Lca5 Leber congenital amaurosis 5 (human) located_in ISO
IDA		 (PMID:21606596)
(MGI:5050784|PMID:21606596)
PMID:17546029		 UniProt
MGI
UniProt		 PMID:17546029 PMID:21606596 GO_REF:0000096 MGI:4417868 MGI:4834177 MGI:5050784 RGD:14397561 NCBI chr 9:83,391,355...83,442,994
Ensembl chr 9:83,390,293...83,441,127 		JBrowse link
G Mak male germ cell-associated kinase located_in IDA (MGI:5298333|PMID:21148103) MGI PMID:21148103 MGI:5298333 NCBI chr13:41,025,007...41,079,706
Ensembl chr13:41,025,008...41,079,706 		JBrowse link
G Myo7a myosin VIIA located_in IDA (MGI:1343017|PMID:10414956) MGI PMID:10414956 MGI:1343017 NCBI chr 7:98,051,054...98,119,522
Ensembl chr 7:98,051,060...98,119,524 		JBrowse link
G Nphp1 nephronophthisis 1 (juvenile) homolog (human) located_in IDA (MGI:4821072|PMID:16885411) UniProt PMID:16885411 MGI:4821072 NCBI chr 2:127,740,732...127,788,913
Ensembl chr 2:127,740,732...127,788,897 		JBrowse link
G Nphp4 nephronophthisis 4 (juvenile) homolog (human) located_in IDA (MGI:4867588|PMID:21078623) MGI PMID:21078623 MGI:4867588 NCBI chr 4:152,476,706...152,563,184
Ensembl chr 4:152,476,706...152,563,183 		JBrowse link
G Pcdhb16 protocadherin beta 16 located_in IDA (MGI:3775581|PMID:18279309) MGI PMID:18279309 MGI:3775581 NCBI chr18:37,477,768...37,483,038
Ensembl chr18:37,477,814...37,483,038 		JBrowse link
G Pcdhb22 protocadherin beta 22 located_in IDA (MGI:3775581|PMID:18279309) MGI PMID:18279309 MGI:3775581 NCBI chr18:37,518,353...37,521,419
Ensembl chr18:37,517,871...37,524,479 		JBrowse link
G Pdzd7 PDZ domain containing 7 colocalizes_with IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr19:45,026,907...45,058,633
Ensembl chr19:45,026,906...45,045,717 		JBrowse link
G Rp1 retinitis pigmentosa 1 (human) part_of
located_in		 ISO
IDA		 (PMID:11767049)
(MGI:2156902|PMID:11773008)
(MGI:2156902|PMID:11773008), (MGI:2676521|PMID:14507858)		 MGI
MGI
UniProt		 PMID:11767049 PMID:11773008 PMID:14507858 MGI:2156902 MGI:2676521 NCBI chr 1:4,115,673...4,409,266
Ensembl chr 1:3,999,557...4,409,241 		JBrowse link
G Rp1l1 retinitis pigmentosa 1 homolog like 1 located_in IDA (MGI:4353917|PMID:19657028) UniProt PMID:19657028 MGI:4353917 NCBI chr14:63,992,431...64,033,506
Ensembl chr14:63,992,506...64,035,025 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in IDA (MGI:1354839|PMID:10725384) MGI PMID:10725384 MGI:1354839 NCBI chr  X:10,158,216...10,216,795
Ensembl chr  X:10,073,621...10,216,920 		JBrowse link
G Rpgrip1 retinitis pigmentosa GTPase regulator interacting protein 1 is_active_in
located_in		 IBA
IDA		 (MGI:6201960|PMID:21873635)
(MGI:5608598|PMID:25398945)		 GO_Central
UniProt		 PMID:21873635 PMID:25398945 MGI:5608598 MGI:6201960 NCBI chr14:52,104,241...52,161,339
Ensembl chr14:52,110,704...52,163,546 		JBrowse link
G Rpgrip1l Rpgrip1-like located_in
is_active_in		 ISO
IBA		 (MGI:6201960|PMID:21873635) MGI
GO_Central		 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 NCBI chr 8:91,217,030...91,313,291
Ensembl chr 8:91,217,030...91,313,262 		JBrowse link
G Septin2 septin 2 located_in ISO (PMID:23572511) GO_Central
MGI		 PMID:23572511 GO_REF:0000096 MGI:4834177 NCBI chr 1:93,478,981...93,509,733
Ensembl chr 1:93,478,964...93,510,260
Ensembl chr 1:93,478,964...93,510,260 		JBrowse link
G Spata7 spermatogenesis associated 7 located_in IDA (MGI:5608598|PMID:25398945) UniProt PMID:25398945 MGI:5608598 NCBI chr12:98,628,129...98,669,819
Ensembl chr12:98,628,157...98,669,815 		JBrowse link
G Sptbn5 spectrin beta, non-erythrocytic 5 part_of
located_in		 ISO (PMID:23704327)
(MGI:5503249|PMID:23704327)		 MGI
MGI		 PMID:23704327 MGI:5503249 NCBI chr 2:120,041,493...120,088,913
Ensembl chr 2:120,041,493...120,085,678 		JBrowse link
G Tbcc tubulin-specific chaperone C located_in ISO (PMID:12417528) UniProt
MGI		 PMID:12417528 GO_REF:0000096 MGI:4834177 NCBI chr17:46,890,621...46,892,463
Ensembl chr17:46,890,684...46,891,847 		JBrowse link
G Tmem237 transmembrane protein 237 located_in IDA (MGI:4830641|PMID:20375344) MGI PMID:20375344 MGI:4830641 NCBI chr 1:59,100,584...59,120,422
Ensembl chr 1:59,100,590...59,120,408 		JBrowse link
G Topors topoisomerase I binding, arginine/serine-rich located_in
is_active_in		 ISO
IBA
IDA		 (PMID:21159800)
(MGI:6201960|PMID:21873635)
(MGI:4939557|PMID:21159800)		 BHF-UCL
GO_Central
BHF-UCL
MGI		 PMID:21159800 PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:4939557 MGI:6201960 NCBI chr 4:40,259,606...40,269,841
Ensembl chr 4:40,259,601...40,269,850 		JBrowse link
G Tsga10ip testis specific 10 interacting protein is_active_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr19:5,390,047...5,402,506
Ensembl chr19:5,390,049...5,402,526 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 located_in IDA (MGI:2677624|PMID:14520415) BHF-UCL PMID:14520415 MGI:2677624 NCBI chr12:98,920,537...98,983,250
Ensembl chr12:98,920,574...98,983,238 		JBrowse link
G Ush1c USH1 protein network component harmonin colocalizes_with IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 7:46,195,350...46,238,490
Ensembl chr 7:46,195,350...46,238,503 		JBrowse link
G Ush1g USH1 protein network component sans located_in IDA (MGI:3774983|PMID:17906286) MGI PMID:17906286 MGI:3774983 NCBI chr11:115,315,192...115,333,736
Ensembl chr11:115,315,192...115,322,041 		JBrowse link
G Ush2a usherin colocalizes_with
located_in		 ISO
IDA		 (MGI:3774983|PMID:17906286), (MGI:4950337|PMID:21212183) MGI PMID:17906286 PMID:21212183 GO_REF:0000096 MGI:3774983 MGI:4417868 MGI:4950337 NCBI chr 1:188,262,838...188,965,497
Ensembl chr 1:188,262,023...188,965,041 		JBrowse link
G Wdr19 WD repeat domain 19 located_in IDA (MGI:3839506|PMID:19208653) UniProt PMID:19208653 MGI:3839506 NCBI chr 5:65,199,696...65,260,415
Ensembl chr 5:65,199,696...65,260,415 		JBrowse link
G Whrn whirlin colocalizes_with
located_in		 IBA
IDA
ISO		 (MGI:6201960|PMID:21873635)
(MGI:3774983|PMID:17906286), (MGI:4950337|PMID:21212183)		 GO_Central
MGI		 PMID:17906286 PMID:21212183 PMID:21873635 GO_REF:0000096 MGI:3774983 MGI:4417868 MGI:4950337 MGI:6201960 NCBI chr 4:63,414,908...63,496,083
Ensembl chr 4:63,414,910...63,495,991 		JBrowse link
photoreceptor disc membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcdhb16 protocadherin beta 16 located_in IDA (MGI:3775581|PMID:18279309) MGI PMID:18279309 MGI:3775581 NCBI chr18:37,477,768...37,483,038
Ensembl chr18:37,477,814...37,483,038 		JBrowse link
G Rho rhodopsin located_in ISO (PMID:25664179) UniProt
MGI		 PMID:25664179 GO_REF:0000096 MGI:4834177 NCBI chr 6:115,926,754...115,940,038
Ensembl chr 6:115,931,748...115,940,036 		JBrowse link
G Sptbn5 spectrin beta, non-erythrocytic 5 part_of
located_in		 ISO (PMID:23704327)
(MGI:5503249|PMID:23704327)		 MGI
MGI		 PMID:23704327 MGI:5503249 NCBI chr 2:120,041,493...120,088,913
Ensembl chr 2:120,041,493...120,085,678 		JBrowse link
photoreceptor distal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 part_of IDA (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr10:20,952,232...21,080,429
Ensembl chr10:20,952,547...21,080,429 		JBrowse link
G Cep290 centrosomal protein 290 part_of IDA (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr10:100,487,548...100,575,671
Ensembl chr10:100,487,558...100,574,840 		JBrowse link
G Nphp1 nephronophthisis 1 (juvenile) homolog (human) part_of IDA (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr 2:127,740,732...127,788,913
Ensembl chr 2:127,740,732...127,788,897 		JBrowse link
G Nphp4 nephronophthisis 4 (juvenile) homolog (human) part_of IDA (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr 4:152,476,706...152,563,184
Ensembl chr 4:152,476,706...152,563,183 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator part_of IDA (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr  X:10,158,216...10,216,795
Ensembl chr  X:10,073,621...10,216,920 		JBrowse link
G Rpgrip1 retinitis pigmentosa GTPase regulator interacting protein 1 part_of IDA (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr14:52,104,241...52,161,339
Ensembl chr14:52,110,704...52,163,546 		JBrowse link
G Spata7 spermatogenesis associated 7 part_of
is_active_in		 IDA
IBA
IMP		 (MGI:6194004|PMID:29899041)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:21873635 PMID:29899041 MGI:6194004 MGI:6201960 NCBI chr12:98,628,129...98,669,819
Ensembl chr12:98,628,157...98,669,815 		JBrowse link
photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP-binding cassette, sub-family A (ABC1), member 4 located_in IDA (MGI:5525015|PMID:23943788) MGI PMID:23943788 MGI:5525015 NCBI chr 3:122,043,891...122,180,070
Ensembl chr 3:122,044,443...122,180,123 		JBrowse link
G Ahi1 Abelson helper integration site 1 located_in IDA (MGI:4461813|PMID:20592197) MGI PMID:20592197 MGI:4461813 NCBI chr10:20,952,232...21,080,429
Ensembl chr10:20,952,547...21,080,429 		JBrowse link
G Arr3 arrestin 3, retinal located_in IDA (MGI:1354839|PMID:10725384), (MGI:3616100|PMID:12486395) MGI PMID:10725384 PMID:12486395 MGI:1354839 MGI:3616100 NCBI chr  X:100,605,480...100,618,493
Ensembl chr  X:100,605,497...100,618,493 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 (human) located_in IDA (MGI:5525015|PMID:23943788) MGI PMID:23943788 MGI:5525015 NCBI chr 9:59,321,966...59,353,508
Ensembl chr 9:59,321,990...59,353,508 		JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 (human) located_in IDA (MGI:5525015|PMID:23943788) MGI PMID:23943788 MGI:5525015 NCBI chr 3:36,573,142...36,613,492
Ensembl chr 3:36,573,142...36,613,477 		JBrowse link
G Bsg basigin located_in IDA (MGI:6436439|PMID:25957687) UniProt PMID:25957687 MGI:6436439 NCBI chr10:79,704,358...79,711,979
Ensembl chr10:79,704,491...79,711,969 		JBrowse link
G Cacna1f calcium channel, voltage-dependent, alpha 1F subunit located_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr  X:7,607,103...7,635,196
Ensembl chr  X:7,607,083...7,635,196 		JBrowse link
G Cep250 centrosomal protein 250 located_in IDA (MGI:6254746|PMID:28005958) UniProt PMID:28005958 MGI:6254746 NCBI chr 2:155,956,285...155,998,900
Ensembl chr 2:155,956,458...155,998,900 		JBrowse link
G Cep290 centrosomal protein 290 located_in IDA (MGI:5525015|PMID:23943788) MGI PMID:23943788 MGI:5525015 NCBI chr10:100,487,548...100,575,671
Ensembl chr10:100,487,558...100,574,840 		JBrowse link
G Cerkl ceramide kinase-like located_in IDA (MGI:5571037|PMID:23142158) MGI PMID:23142158 MGI:5571037 NCBI chr 2:79,332,491...79,428,988
Ensembl chr 2:79,330,543...79,456,785 		JBrowse link
G Cfap410 cilia and flagella associated protein 410 located_in ISO (PMID:27548899) UniProt
MGI		 PMID:27548899 GO_REF:0000096 MGI:4834177 NCBI chr10:77,978,530...77,985,438
Ensembl chr10:77,978,524...77,986,905 		JBrowse link
G Cib2 calcium and integrin binding family member 2 located_in IDA (MGI:5487486|PMID:23023331) UniProt PMID:23023331 MGI:5487486 NCBI chr 9:54,544,794...54,560,190
Ensembl chr 9:54,544,794...54,560,218 		JBrowse link
G Cnga1 cyclic nucleotide gated channel alpha 1 located_in IDA (MGI:1354839|PMID:10725384), (MGI:3527312|PMID:15634774), (MGI:4461813|PMID:20592197) MGI PMID:10725384 PMID:15634774 PMID:20592197 MGI:1354839 MGI:3527312 MGI:4461813 NCBI chr 5:72,603,696...72,642,752
Ensembl chr 5:72,603,696...72,644,275 		JBrowse link
G Cnga3 cyclic nucleotide gated channel alpha 3 located_in IDA
ISO		 (MGI:1355614|PMID:10813773), (MGI:3527312|PMID:15634774) MGI PMID:10813773 PMID:15634774 MGI:1355614 MGI:3527312 NCBI chr 1:37,218,241...37,263,384
Ensembl chr 1:37,214,434...37,263,384 		JBrowse link
G Cngb1 cyclic nucleotide gated channel beta 1 located_in IDA (MGI:5587954|PMID:22183407) MGI PMID:22183407 MGI:5587954 NCBI chr 8:95,239,043...95,306,585
Ensembl chr 8:95,239,045...95,306,585 		JBrowse link
G Cngb3 cyclic nucleotide gated channel beta 3 located_in IDA (MGI:3527312|PMID:15634774) MGI PMID:15634774 MGI:3527312 NCBI chr 4:19,280,850...19,510,623
Ensembl chr 4:19,280,850...19,510,623 		JBrowse link
G Gnat1 guanine nucleotide binding protein, alpha transducing 1 located_in ISO
IDA		 (PMID:2534964)
(MGI:3778702|PMID:18367617), (MGI:4461813|PMID:20592197), (MGI:6383261|PMID:31696965)		 UniProt
MGI		 PMID:2534964 PMID:18367617 PMID:20592197 PMID:31696965 GO_REF:0000096 MGI:3778702 MGI:4417868 MGI:4461813 MGI:4834177 MGI:6383261 NCBI chr 9:107,674,437...107,679,634
Ensembl chr 9:107,674,474...107,679,712 		JBrowse link
G Gnat2 guanine nucleotide binding protein, alpha transducing 2 located_in
is_active_in		 ISO
IBA		 (PMID:2534964)
(MGI:6201960|PMID:21873635)		 UniProt
MGI
GO_Central		 PMID:2534964 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:4834177 MGI:6201960 NCBI chr 3:108,086,788...108,101,432
Ensembl chr 3:108,092,789...108,101,432 		JBrowse link
G Gnat3 guanine nucleotide binding protein, alpha transducing 3 is_active_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 5:17,962,570...18,019,668
Ensembl chr 5:17,962,549...18,019,834 		JBrowse link
G Gnb1 guanine nucleotide binding protein (G protein), beta 1 located_in IDA (MGI:3778702|PMID:18367617) MGI PMID:18367617 MGI:3778702 NCBI chr 4:155,491,300...155,559,269
Ensembl chr 4:155,491,361...155,559,269 		JBrowse link
G Gnb5 guanine nucleotide binding protein (G protein), beta 5 located_in IDA (MGI:5507748|PMID:23555598) MGI PMID:23555598 MGI:5507748 NCBI chr 9:75,306,288...75,345,923
Ensembl chr 9:75,306,288...75,345,876 		JBrowse link
G Gngt1 guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1 located_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 6:3,989,082...3,997,436
Ensembl chr 6:3,993,792...3,997,436 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 located_in IDA (MGI:5587954|PMID:22183407) MGI PMID:22183407 MGI:5587954 NCBI chr 8:13,405,081...13,421,951
Ensembl chr 8:13,405,081...13,421,951 		JBrowse link
G Guca1a guanylate cyclase activator 1a (retina) located_in IDA
ISO		 (MGI:5587954|PMID:22183407) MGI PMID:22183407 GO_REF:0000096 MGI:4417868 MGI:5587954 NCBI chr17:47,394,557...47,413,514
Ensembl chr17:47,394,558...47,400,584 		JBrowse link
G Guca1b guanylate cyclase activator 1B located_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr17:47,384,694...47,392,967
Ensembl chr17:47,385,393...47,392,967 		JBrowse link
G Guca2b guanylate cyclase activator 2b (retina) located_in IDA (MGI:5587954|PMID:22183407) MGI PMID:22183407 MGI:5587954 NCBI chr 4:119,656,601...119,658,945
Ensembl chr 4:119,656,607...119,658,954 		JBrowse link
G Gucy2e guanylate cyclase 2e located_in ISO (PMID:7912093) UniProt
MGI		 PMID:7912093 GO_REF:0000096 MGI:4834177 NCBI chr11:69,218,117...69,237,279
Ensembl chr11:69,218,117...69,237,036 		JBrowse link
G Hnf1a HNF1 homeobox A located_in IGI (MGI:1334099|PMID:10090727) MGI PMID:10090727 MGI:1334099 NCBI chr 5:114,948,980...114,971,062
Ensembl chr 5:114,948,980...114,971,094 		JBrowse link
G Ift140 intraflagellar transport 140 located_in IDA (MGI:5604762|PMID:24619649) MGI PMID:24619649 MGI:5604762 NCBI chr17:25,016,083...25,099,499
Ensembl chr17:25,016,085...25,099,495 		JBrowse link
G Ift20 intraflagellar transport 20 located_in IDA (MGI:5317282|PMID:21307337) MGI PMID:21307337 MGI:5317282 NCBI chr11:78,536,361...78,541,732
Ensembl chr11:78,536,361...78,541,737 		JBrowse link
G Inha inhibin alpha located_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 1:75,507,077...75,510,366
Ensembl chr 1:75,507,077...75,510,366 		JBrowse link
G Iqcb1 IQ calmodulin-binding motif containing 1 located_in IDA (MGI:3763297|PMID:15723066) HGNC-UCL PMID:15723066 MGI:3763297 NCBI chr16:36,828,360...36,872,719
Ensembl chr16:36,828,385...36,872,721 		JBrowse link
G Lyar Ly1 antibody reactive clone located_in IDA (MGI:6107438|PMID:25735755) UniProt PMID:25735755 MGI:6107438 NCBI chr 5:38,220,471...38,234,306
Ensembl chr 5:38,220,470...38,234,306 		JBrowse link
G Mak male germ cell-associated kinase located_in IDA (MGI:5298333|PMID:21148103) MGI PMID:21148103 MGI:5298333 NCBI chr13:41,025,007...41,079,706
Ensembl chr13:41,025,008...41,079,706 		JBrowse link
G Map1a microtubule-associated protein 1 A located_in IDA (MGI:5587952|PMID:24664738) MGI PMID:24664738 MGI:5587952 NCBI chr 2:121,289,590...121,310,832
Ensembl chr 2:121,289,600...121,310,832 		JBrowse link
G Map1b microtubule-associated protein 1B located_in IDA (MGI:5587952|PMID:24664738) MGI PMID:24664738 MGI:5587952 NCBI chr13:99,421,464...99,516,602
Ensembl chr13:99,421,446...99,516,540 		JBrowse link
G Mertk MER proto-oncogene tyrosine kinase located_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 2:128,698,915...128,803,162
Ensembl chr 2:128,698,956...128,802,894 		JBrowse link
G Myo3b myosin IIIB located_in IDA (MGI:4352610|PMID:19332056) MGI PMID:19332056 MGI:4352610 NCBI chr 2:70,039,126...70,429,195
Ensembl chr 2:70,039,126...70,429,198 		JBrowse link
G Myo5a myosin VA located_in IDA (MGI:3047015|PMID:14978221) MGI PMID:14978221 MGI:3047015 NCBI chr 9:75,069,799...75,223,688
Ensembl chr 9:75,071,015...75,223,688 		JBrowse link
G Myo7a myosin VIIA located_in
NOT|located_in		 ISO
IDA		 (PMID:8842737)
(MGI:81971|PMID:8842737)		 UniProt
UniProt		 PMID:8842737 MGI:81971 RGD:8553559 NCBI chr 7:98,051,054...98,119,522
Ensembl chr 7:98,051,060...98,119,524 		JBrowse link
G Myrip myosin VIIA and Rab interacting protein located_in IDA (MGI:2180422|PMID:11964381) UniProt PMID:11964381 MGI:2180422 NCBI chr 9:120,303,520...120,476,101
Ensembl chr 9:120,301,513...120,474,841 		JBrowse link
G Nupl2 nucleoporin like 2 located_in IDA (MGI:5587954|PMID:22183407) MGI PMID:22183407 MGI:5587954 NCBI chr 5:24,164,963...24,184,013
Ensembl chr 5:24,164,963...24,184,013 		JBrowse link
G Ocrl OCRL, inositol polyphosphate-5-phosphatase located_in ISO (PMID:22543976) UniProt
MGI		 PMID:22543976 GO_REF:0000096 MGI:4834177 NCBI chr  X:47,912,418...47,966,428
Ensembl chr  X:47,912,387...47,965,868 		JBrowse link
G Opn1mw opsin 1 (cone pigments), medium-wave-sensitive (color blindness, deutan) is_active_in
located_in		 IBA
IDA
ISO		 (MGI:6201960|PMID:21873635)
(MGI:1354839|PMID:10725384), (MGI:2654998|PMID:12651948), (MGI:4352610|PMID:19332056), (MGI:5488667|PMID:23351594), (MGI:5494796|PMID:23386608)		 GO_Central
MGI		 PMID:10725384 PMID:12651948 PMID:19332056 PMID:21873635 PMID:23351594 PMID:23386608 GO_REF:0000096 MGI:1354839 MGI:2654998 MGI:4352610 MGI:4417868 MGI:5488667 MGI:5494796 MGI:6201960 NCBI chr  X:74,127,466...74,150,756
Ensembl chr  X:74,127,464...74,150,760 		JBrowse link
G Opn1sw opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan) located_in
is_active_in		 ISO
IDA
IBA		 (MGI:1354839|PMID:10725384), (MGI:1355614|PMID:10813773), (MGI:2654998|PMID:12651948), (MGI:4352610|PMID:19332056), (MGI:5488667|PMID:23351594), (MGI:5494796|PMID:23386608), (MGI:5587954|PMID:22183407), (MGI:6305433|PMID:26420485)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:10725384 PMID:10813773 PMID:12651948 PMID:19332056 PMID:21873635 PMID:22183407 PMID:23351594 PMID:23386608 PMID:26420485 GO_REF:0000096 MGI:1354839 MGI:1355614 MGI:2654998 MGI:4352610 MGI:4417868 MGI:5488667 MGI:5494796 MGI:5587954 MGI:6201960 MGI:6305433 NCBI chr 6:29,376,671...29,380,513
Ensembl chr 6:29,376,671...29,388,468 		JBrowse link
G Opn3 opsin 3 is_active_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 1:175,662,421...175,692,901
Ensembl chr 1:175,662,421...175,692,776 		JBrowse link
G Pcare photoreceptor cilium actin regulator located_in
is_active_in		 IDA
IBA		 (MGI:5636574|PMID:25616964)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:21873635 PMID:25616964 MGI:5636574 MGI:6201960 NCBI chr17:71,743,555...71,752,905
Ensembl chr17:71,743,555...71,752,894 		JBrowse link
G Pcdh15 protocadherin 15 located_in ISO
IDA		 (PMID:14570705)
(MGI:3722521|PMID:14570705)		 HGNC-UCL
MGI		 PMID:14570705 GO_REF:0000096 MGI:3722521 MGI:4834177 NCBI chr10:73,096,277...74,649,831
Ensembl chr10:73,099,342...74,649,737 		JBrowse link
G Pdc phosducin located_in IDA (MGI:3778702|PMID:18367617) MGI PMID:18367617 MGI:3778702 NCBI chr 1:150,319,417...150,333,906
Ensembl chr 1:150,319,417...150,333,906 		JBrowse link
G Pde6b phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide located_in IDA (MGI:5587954|PMID:22183407) MGI PMID:22183407 MGI:5587954 NCBI chr 5:108,388,373...108,431,743
Ensembl chr 5:108,388,391...108,432,397 		JBrowse link
G Plekhb1 pleckstrin homology domain containing, family B (evectins) member 1 located_in TAS (MGI:3583854|PMID:15976448) UniProt PMID:15976448 MGI:3583854 NCBI chr 7:100,643,896...100,662,394
Ensembl chr 7:100,642,892...100,662,414 		JBrowse link
G Prcd photoreceptor disc component located_in IDA (MGI:5819338|PMID:23672200) HGNC PMID:23672200 MGI:5819338 NCBI chr11:116,653,889...116,668,389
Ensembl chr11:116,653,534...116,668,389 		JBrowse link
G Prkca protein kinase C, alpha located_in IDA (MGI:1355614|PMID:10813773) MGI PMID:10813773 MGI:1355614 NCBI chr11:107,933,387...108,343,888
Ensembl chr11:107,933,387...108,343,928 		JBrowse link
G Prom1 prominin 1 located_in IDA (MGI:3838023|PMID:19228982) UniProt PMID:19228982 MGI:3838023 NCBI chr 5:43,993,621...44,102,047
Ensembl chr 5:43,993,620...44,102,032 		JBrowse link
G Prph peripherin located_in IDA (MGI:5587954|PMID:22183407) MGI PMID:22183407 MGI:5587954 NCBI chr15:99,053,579...99,058,978
Ensembl chr15:99,055,174...99,058,978 		JBrowse link
G Prph2 peripherin 2 located_in IDA (MGI:5587954|PMID:22183407), (MGI:5905515|PMID:28053051), (MGI:6305433|PMID:26420485) MGI PMID:22183407 PMID:26420485 PMID:28053051 MGI:5587954 MGI:5905515 MGI:6305433 NCBI chr17:46,910,478...46,924,933
Ensembl chr17:46,910,459...46,924,933 		JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 located_in IDA (MGI:2429331|PMID:12355421) MGI PMID:12355421 MGI:2429331 NCBI chr 2:36,216,742...36,258,593
Ensembl chr 2:36,230,426...36,252,272 		JBrowse link
G Ptprk protein tyrosine phosphatase, receptor type, K located_in IDA (MGI:3794228|PMID:18308476) MGI PMID:18308476 MGI:3794228 NCBI chr10:28,074,820...28,597,397
Ensembl chr10:28,074,820...28,597,397 		JBrowse link
G Rab27a RAB27A, member RAS oncogene family located_in IDA (MGI:2180422|PMID:11964381) UniProt PMID:11964381 MGI:2180422 NCBI chr 9:73,044,810...73,097,623
Ensembl chr 9:73,044,854...73,097,629 		JBrowse link
G Rapgef4 Rap guanine nucleotide exchange factor (GEF) 4 located_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 2:71,981,215...72,257,474
Ensembl chr 2:71,981,240...72,257,474 		JBrowse link
G Rd3 retinal degeneration 3 located_in IDA (MGI:6368063|PMID:29515371) UniProt PMID:29515371 MGI:6368063 NCBI chr 1:191,956,490...191,988,282
Ensembl chr 1:191,977,370...191,988,283 		JBrowse link
G Rgr retinal G protein coupled receptor is_active_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr14:37,034,909...37,049,014
Ensembl chr14:37,034,909...37,048,964 		JBrowse link
G Rgs9 regulator of G-protein signaling 9 located_in IDA (MGI:5507748|PMID:23555598) MGI PMID:23555598 MGI:5507748 NCBI chr11:109,225,348...109,298,181
Ensembl chr11:109,225,355...109,298,129 		JBrowse link
G Rgs9bp regulator of G-protein signalling 9 binding protein located_in IDA (MGI:5507748|PMID:23555598) MGI PMID:23555598 MGI:5507748 NCBI chr 7:35,578,993...35,585,582
Ensembl chr 7:35,578,993...35,585,582 		JBrowse link
G Rho rhodopsin part_of
located_in
is_active_in		 ISO
IDA
IBA		 (PMID:11767049), (PMID:23704327)
(MGI:1354839|PMID:10725384), (MGI:2654998|PMID:12651948), (MGI:4352610|PMID:19332056), (MGI:4461813|PMID:20592197), (MGI:4949555|PMID:21444805), (MGI:4950337|PMID:21212183), (MGI:5462139|PMID:22869374), (MGI:5467890|PMID:23178122), (MGI:5488667|PMID:23351594), (MGI:5525015|PMID:23943788), (MGI:5587954|PMID:22183407), (MGI:5607451|PMID:25224828), (MGI:6305433|PMID:26420485)
(MGI:6201960|PMID:21873635)
(MGI:2156902|PMID:11773008), (MGI:5503249|PMID:23704327)		 MGI
MGI
GO_Central		 PMID:10725384 PMID:11767049 PMID:11773008 PMID:12651948 PMID:19332056 PMID:20592197 PMID:21212183 PMID:21444805 PMID:21873635 PMID:22183407 PMID:22869374 PMID:23178122 PMID:23351594 PMID:23704327 PMID:23943788 PMID:25224828 PMID:26420485 GO_REF:0000096 MGI:1354839 MGI:2156902 MGI:2654998 MGI:4352610 MGI:4417868 MGI:4461813 MGI:4949555 MGI:4950337 MGI:5462139 MGI:5467890 MGI:5488667 MGI:5503249 MGI:5525015 MGI:5587954 MGI:5607451 MGI:6201960 MGI:6305433 NCBI chr 6:115,926,754...115,940,038
Ensembl chr 6:115,931,748...115,940,036 		JBrowse link
G Rom1 rod outer segment membrane protein 1 located_in IDA (MGI:4461813|PMID:20592197), (MGI:5587954|PMID:22183407), (MGI:6305433|PMID:26420485) MGI PMID:20592197 PMID:22183407 PMID:26420485 MGI:4461813 MGI:5587954 MGI:6305433 NCBI chr19:8,927,382...8,929,356
Ensembl chr19:8,927,391...8,929,356 		JBrowse link
G Rp1 retinitis pigmentosa 1 (human) located_in IDA (MGI:2676521|PMID:14507858), (MGI:3629826|PMID:15269252) UniProt PMID:14507858 PMID:15269252 MGI:2676521 MGI:3629826 NCBI chr 1:4,115,673...4,409,266
Ensembl chr 1:3,999,557...4,409,241 		JBrowse link
G Rp1l1 retinitis pigmentosa 1 homolog like 1 located_in IDA (MGI:4353917|PMID:19657028) UniProt PMID:19657028 MGI:4353917 NCBI chr14:63,992,431...64,033,506
Ensembl chr14:63,992,506...64,035,025 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (PMID:12140192) UniProt
MGI		 PMID:12140192 GO_REF:0000096 MGI:4834177 NCBI chr  X:10,158,216...10,216,795
Ensembl chr  X:10,073,621...10,216,920 		JBrowse link
G Rrh retinal pigment epithelium derived rhodopsin homolog is_active_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 3:129,808,575...129,822,505
Ensembl chr 3:129,804,408...129,822,587 		JBrowse link
G Sag S-antigen, retina and pineal gland (arrestin) located_in
is_active_in		 ISO
IDA
IBA		 (PMID:3720866)
(MGI:5462139|PMID:22869374)
(MGI:6201960|PMID:21873635)		 UniProt
MGI
GO_Central		 PMID:3720866 PMID:21873635 PMID:22869374 GO_REF:0000096 MGI:4417868 MGI:4834177 MGI:5462139 MGI:6201960 NCBI chr 1:87,798,143...87,845,158
Ensembl chr 1:87,803,680...87,845,158 		JBrowse link
G Shank2 SH3 and multiple ankyrin repeat domains 2 part_of
located_in		 IDA (MGI:5306573|PMID:19299912) CACAO
BHF-UCL		 PMID:19299912 MGI:5306573 NCBI chr 7:143,978,077...144,426,043
Ensembl chr 7:144,001,928...144,424,494 		JBrowse link
G Tulp1 tubby like protein 1 located_in IDA (MGI:4397555|PMID:19218615) UniProt PMID:19218615 MGI:4397555 NCBI chr17:28,351,515...28,365,216
Ensembl chr17:28,351,515...28,365,222 		JBrowse link
G Ush1c USH1 protein network component harmonin located_in IDA (MGI:2679149|PMID:14578428), (MGI:3774983|PMID:17906286) MGI PMID:14578428 PMID:17906286 MGI:2679149 MGI:3774983 NCBI chr 7:46,195,350...46,238,490
Ensembl chr 7:46,195,350...46,238,503 		JBrowse link
photoreceptor outer segment membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdhr1 cadherin-related family member 1 located_in IDA (MGI:3814988|PMID:18654668) BHF-UCL PMID:18654668 MGI:3814988 NCBI chr14:37,077,849...37,098,347
Ensembl chr14:37,077,857...37,098,347 		JBrowse link
G Cnga1 cyclic nucleotide gated channel alpha 1 located_in IDA (MGI:3814988|PMID:18654668) BHF-UCL PMID:18654668 MGI:3814988 NCBI chr 5:72,603,696...72,642,752
Ensembl chr 5:72,603,696...72,644,275 		JBrowse link
G Gnb1 guanine nucleotide binding protein (G protein), beta 1 located_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 4:155,491,300...155,559,269
Ensembl chr 4:155,491,361...155,559,269 		JBrowse link
G Gucy2e guanylate cyclase 2e located_in ISO
IDA		 PMID:9153227
(MGI:5049799|PMID:21598940)		 UniProt
UniProt
MGI		 PMID:9153227 PMID:21598940 GO_REF:0000096 MGI:4417868 MGI:5049799 RGD:1599625 NCBI chr11:69,218,117...69,237,279
Ensembl chr11:69,218,117...69,237,036 		JBrowse link
G Pde6a phosphodiesterase 6A, cGMP-specific, rod, alpha is_active_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr18:61,220,474...61,289,750
Ensembl chr18:61,220,315...61,289,924 		JBrowse link
G Pde6b phosphodiesterase 6B, cGMP, rod receptor, beta polypeptide is_active_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 5:108,388,373...108,431,743
Ensembl chr 5:108,388,391...108,432,397 		JBrowse link
G Pde6g phosphodiesterase 6G, cGMP-specific, rod, gamma is_active_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr11:120,447,607...120,453,500
Ensembl chr11:120,447,605...120,453,500 		JBrowse link
G Pde6h phosphodiesterase 6H, cGMP-specific, cone, gamma is_active_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 6:136,952,218...136,963,485
Ensembl chr 6:136,923,832...136,968,865 		JBrowse link
G Phlpp2 PH domain and leucine rich repeat protein phosphatase 2 located_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 8:109,868,517...109,944,671
Ensembl chr 8:109,868,542...109,944,671 		JBrowse link
G Prcd photoreceptor disc component located_in
is_active_in		 ISO
IBA
IDA		 (PMID:27613864)
(MGI:6201960|PMID:21873635)
(MGI:5812604|PMID:27613864), (MGI:6271388|PMID:27509380)		 UniProt
GO_Central
UniProt		 PMID:21873635 PMID:27509380 PMID:27613864 MGI:5812604 MGI:6201960 MGI:6271388 NCBI chr11:116,653,889...116,668,389
Ensembl chr11:116,653,534...116,668,389 		JBrowse link
G Prom1 prominin 1 located_in ISO (PMID:18654668) BHF-UCL
MGI		 PMID:18654668 GO_REF:0000096 MGI:4834177 NCBI chr 5:43,993,621...44,102,047
Ensembl chr 5:43,993,620...44,102,032 		JBrowse link
G Prph peripherin located_in IDA (MGI:1343017|PMID:10414956) MGI PMID:10414956 MGI:1343017 NCBI chr15:99,053,579...99,058,978
Ensembl chr15:99,055,174...99,058,978 		JBrowse link
G Rdh11 retinol dehydrogenase 11 NOT|located_in IDA (MGI:3584215|PMID:15790565) MGI PMID:15790565 MGI:3584215 NCBI chr12:79,174,233...79,191,855
Ensembl chr12:79,174,337...79,192,293 		JBrowse link
G Rho rhodopsin located_in ISO (PMID:19934218) UniProt
MGI		 PMID:19934218 GO_REF:0000096 MGI:4417868 MGI:4834177 NCBI chr 6:115,926,754...115,940,038
Ensembl chr 6:115,931,748...115,940,036 		JBrowse link
G Rom1 rod outer segment membrane protein 1 located_in IDA (MGI:3814988|PMID:18654668) BHF-UCL PMID:18654668 MGI:3814988 NCBI chr19:8,927,382...8,929,356
Ensembl chr19:8,927,391...8,929,356 		JBrowse link
photoreceptor proximal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep290 centrosomal protein 290 part_of IDA (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr10:100,487,548...100,575,671
Ensembl chr10:100,487,558...100,574,840 		JBrowse link
rod photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1a4 ATPase, Na+/K+ transporting, alpha 4 polypeptide located_in ISO (PMID:26373354) ARUK-UCL
MGI		 PMID:26373354 GO_REF:0000096 MGI:4834177 NCBI chr 1:172,223,508...172,258,424
Ensembl chr 1:172,223,513...172,258,414 		JBrowse link
G Cep290 centrosomal protein 290 part_of IGI (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr10:100,487,548...100,575,671
Ensembl chr10:100,487,558...100,574,840 		JBrowse link
G Gucy2f guanylate cyclase 2f located_in IDA (MGI:4867355|PMID:21078983) UniProt PMID:21078983 MGI:4867355 NCBI chr  X:142,079,286...142,197,276
Ensembl chr  X:142,081,160...142,196,931 		JBrowse link
G Rd3 retinal degeneration 3 located_in IDA (MGI:4867355|PMID:21078983) UniProt PMID:21078983 MGI:4867355 NCBI chr 1:191,956,490...191,988,282
Ensembl chr 1:191,977,370...191,988,283 		JBrowse link
G Spata7 spermatogenesis associated 7 part_of
is_active_in		 IMP
IBA
IGI		 (MGI:6194004|PMID:29899041)
(MGI:6201960|PMID:21873635)		 MGI
GO_Central		 PMID:21873635 PMID:29899041 MGI:6194004 MGI:6201960 NCBI chr12:98,628,129...98,669,819
Ensembl chr12:98,628,157...98,669,815 		JBrowse link
G Tmem237 transmembrane protein 237 located_in IDA (MGI:4830641|PMID:20375344) MGI PMID:20375344 MGI:4830641 NCBI chr 1:59,100,584...59,120,422
Ensembl chr 1:59,100,590...59,120,408 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 23082
    cellular anatomical entity 19007
      organelle 12843
        cilium 694
          non-motile cilium 170
            9+0 non-motile cilium 131
              photoreceptor cell cilium + 118
Path 2
Term Annotations click to browse term
  cellular_component 23082
    cellular anatomical entity 19007
      cell projection 2611
        plasma membrane bounded cell projection 2378
          cilium 694
            non-motile cilium 170
              9+0 non-motile cilium 131
                photoreceptor cell cilium + 118
paths to the root