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ONTOLOGY REPORT - ANNOTATIONS


Term:9+0 non-motile cilium
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Accession:GO:0097731 term browser browse the term
Definition:A non-motile cilium where the axoneme has a ring of nine outer microtubule doublets but no central microtubules (and is therefore called a 9+0 axoneme).
Comment:This type of cilia may be present in solitary (authentic primary cilia in many cell types) or in multiple copies (e.g. in Grueneberg ganglion neurons).
Synonyms:exact_synonym: 9+0 immotile cilium
 narrow_synonym: primary cilium


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9+0 non-motile cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dynll2 dynein light chain LC8-type 2 located_in ISO (PMID:29257953) GO_Central PMID:29257953 NCBI chrNW_004955451:4,929,186...4,936,027
Ensembl chrNW_004955451:4,929,186...4,936,027
JBrowse link
G Ift80 intraflagellar transport 80 ISO (MGI:5807019|PMID:26996322) MGI PMID:26996322 MGI:5807019 NCBI chrNW_004955448:10,808,940...10,819,655 JBrowse link
G Iftap intraflagellar transport associated protein ISO (MGI:5807035|PMID:26703212) MGI PMID:26703212 MGI:5807035 NCBI chrNW_004955422:9,804,012...9,867,580
Ensembl chrNW_004955422:9,804,075...9,851,434
JBrowse link
G LOC102025310 chromosome unknown open reading frame, human C4orf47 located_in ISO (PMID:29257953) GO_Central PMID:29257953 NCBI chrNW_004955403:23,617,764...23,634,689
Ensembl chrNW_004955403:23,619,399...23,634,731
JBrowse link
G LOC106147121 chromosome unknown open reading frame, human C1orf115 located_in ISO (PMID:29257953) GO_Central PMID:29257953 NCBI chrNW_004955520:3,064,235...3,065,978 JBrowse link
G Phyh phytanoyl-CoA 2-hydroxylase located_in ISO (PMID:29257953) GO_Central PMID:29257953 NCBI chrNW_004955462:1,238,622...1,250,731
Ensembl chrNW_004955462:1,238,622...1,250,736
JBrowse link
G Pkhd1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin ISO (MGI:5604763|PMID:24586199) MGI PMID:24586199 MGI:5604763 NCBI chrNW_004955411:5,988,100...6,434,369
Ensembl chrNW_004955411:5,990,316...6,432,301
JBrowse link
G Smo smoothened, frizzled class receptor ISO (MGI:5807019|PMID:26996322) MGI PMID:26996322 MGI:5807019 NCBI chrNW_004955479:9,963,377...9,991,670
Ensembl chrNW_004955479:9,964,170...9,993,165
JBrowse link
G Ttll4 tubulin tyrosine ligase like 4 ISO (MGI:3771321|PMID:17499049) MGI PMID:17499049 MGI:3771321 NCBI chrNW_004955453:14,679,945...14,720,025 JBrowse link
G Ttll5 tubulin tyrosine ligase like 5 ISO (MGI:3771321|PMID:17499049) MGI PMID:17499049 MGI:3771321 NCBI chrNW_004955612:109,742...351,255
Ensembl chrNW_004955612:109,743...353,918
JBrowse link
G Ttll6 tubulin tyrosine ligase like 6 ISO (MGI:3771321|PMID:17499049) MGI PMID:17499049 MGI:3771321 NCBI chrNW_004955451:12,474,035...12,509,104
Ensembl chrNW_004955451:12,473,935...12,509,192
JBrowse link
G Ttll7 tubulin tyrosine ligase like 7 ISO (MGI:3771321|PMID:17499049) MGI PMID:17499049 MGI:3771321 NCBI chrNW_004955423:9,819,049...9,956,744
Ensembl chrNW_004955423:9,820,380...9,980,728
JBrowse link
G Tulp3 TUB like protein 3 part_of ISO (PMID:20889716) MGI PMID:20889716 NCBI chrNW_004955429:18,424,912...18,484,522
Ensembl chrNW_004955429:18,453,311...18,482,400
JBrowse link
cone photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guca1a guanylate cyclase activator 1A located_in ISO (PMID:9620085) UniProt PMID:9620085 NCBI chrNW_004955437:8,370,553...8,382,640
Ensembl chrNW_004955437:8,376,091...8,382,640
JBrowse link
G Guca1b guanylate cyclase activator 1B located_in ISO (PMID:9620085) UniProt PMID:9620085 NCBI chrNW_004955437:8,384,692...8,390,946
Ensembl chrNW_004955437:8,382,299...8,390,946
JBrowse link
G Rd3 RD3 regulator of GUCY2D ISO (MGI:4867355|PMID:21078983) UniProt PMID:21078983 MGI:4867355 NCBI chrNW_004955489:896,964...903,855 JBrowse link
G Tmem237 transmembrane protein 237 ISO (MGI:4830641|PMID:20375344) MGI PMID:20375344 MGI:4830641 NCBI chrNW_004955403:148,181...173,350
Ensembl chrNW_004955403:148,183...172,386
JBrowse link
photoreceptor cell cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfap410 cilia and flagella associated protein 410 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004955407:41,120,820...41,128,089
Ensembl chrNW_004955407:41,121,048...41,126,996
JBrowse link
G Ift52 intraflagellar transport 52 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004955445:13,542,726...13,580,204
Ensembl chrNW_004955445:13,543,804...13,580,204
JBrowse link
G Pex6 peroxisomal biogenesis factor 6 located_in ISO (MGI:5816430|PMID:26593283)
(PMID:26593283)
UniProt PMID:26593283 MGI:5816430 NCBI chrNW_004955437:8,945,842...8,964,870
Ensembl chrNW_004955437:8,947,002...8,960,371
JBrowse link
G Rp1 RP1 axonemal microtubule associated ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Sdccag8 SHH signaling and ciliogenesis regulator SDCCAG8 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004955406:6,694,687...6,909,555
Ensembl chrNW_004955406:6,695,051...6,909,555
JBrowse link
photoreceptor connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrv1 adhesion G protein-coupled receptor V1 ISO (MGI:3774983|PMID:17906286) MGI PMID:17906286 MGI:3774983 NCBI chrNW_004955418:20,603,323...21,039,891 JBrowse link
G Arl3 ADP ribosylation factor like GTPase 3 located_in ISO (PMID:12417528) UniProt PMID:12417528 NCBI chrNW_004955485:7,739,556...7,772,582
Ensembl chrNW_004955485:7,733,211...7,775,687
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 ISO (MGI:5525015|PMID:23943788) MGI PMID:23943788 MGI:5525015 NCBI chrNW_004955450:4,624,634...4,668,470
Ensembl chrNW_004955450:4,631,266...4,662,719
JBrowse link
G Cep290 centrosomal protein 290 ISO (MGI:3624140|PMID:16632484), (MGI:3653539|PMID:16682973), (MGI:5525015|PMID:23943788) UniProt PMID:16632484 PMID:16682973 PMID:23943788 MGI:3624140 MGI:3653539 MGI:5525015 NCBI chrNW_004955405:25,533,037...25,607,021
Ensembl chrNW_004955405:25,533,525...25,606,212
JBrowse link
G Cetn1 centrin 1 ISO (MGI:3525432|PMID:15347651), (MGI:6393223|PMID:30120214) MGI PMID:15347651 PMID:30120214 MGI:3525432 MGI:6393223 NCBI chrNW_004955402:9,381,400...9,382,158
Ensembl chrNW_004955402:9,381,570...9,382,088
JBrowse link
G Cetn2 centrin 2 ISO (MGI:3525432|PMID:15347651) MGI PMID:15347651 MGI:3525432 NCBI chrNW_004955498:8,131,356...8,135,751
Ensembl chrNW_004955498:8,131,295...8,135,751
JBrowse link
G Cetn3 centrin 3 ISO (MGI:3525432|PMID:15347651), (MGI:5303017|PMID:22031837), (MGI:5588761|PMID:24833722) MGI PMID:15347651 PMID:22031837 PMID:24833722 MGI:3525432 MGI:5303017 MGI:5588761 NCBI chrNW_004955418:21,206,387...21,220,984
Ensembl chrNW_004955418:21,206,387...21,222,456
JBrowse link
G Cfap410 cilia and flagella associated protein 410 ISO (MGI:5770162|PMID:26974433) UniProt PMID:26974433 MGI:5770162 NCBI chrNW_004955407:41,120,820...41,128,089
Ensembl chrNW_004955407:41,121,048...41,126,996
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 ISO (MGI:3757777|PMID:17881533) MGI PMID:17881533 MGI:3757777 NCBI chrNW_004955532:2,018,850...2,023,603
Ensembl chrNW_004955532:2,018,850...2,023,603
JBrowse link
G Ift122 intraflagellar transport 122 ISO (MGI:3839506|PMID:19208653) UniProt PMID:19208653 MGI:3839506 NCBI chrNW_004955429:17,795,757...17,858,609
Ensembl chrNW_004955429:17,794,879...17,858,609
JBrowse link
G Ift140 intraflagellar transport 140 ISO (MGI:4460838|PMID:20368623), (MGI:5604762|PMID:24619649) MGI PMID:20368623 PMID:24619649 MGI:4460838 MGI:5604762 NCBI chrNW_004955442:15,625,429...15,719,006
Ensembl chrNW_004955442:15,630,501...15,718,484
JBrowse link
G Ift20 intraflagellar transport 20 ISO (MGI:5317282|PMID:21307337) MGI PMID:21307337 MGI:5317282 NCBI chrNW_004955481:4,799,548...4,807,751
Ensembl chrNW_004955481:4,799,548...4,807,751
JBrowse link
G Ift52 intraflagellar transport 52 ISO (MGI:4460838|PMID:20368623) MGI PMID:20368623 MGI:4460838 NCBI chrNW_004955445:13,542,726...13,580,204
Ensembl chrNW_004955445:13,543,804...13,580,204
JBrowse link
G Ift57 intraflagellar transport 57 ISO (MGI:4460838|PMID:20368623) MGI PMID:20368623 MGI:4460838 NCBI chrNW_004955427:8,814,298...8,871,671
Ensembl chrNW_004955427:8,814,298...8,871,720
JBrowse link
G Ift88 intraflagellar transport 88 ISO (MGI:3839506|PMID:19208653), (MGI:4460838|PMID:20368623) MGI PMID:19208653 PMID:20368623 MGI:3839506 MGI:4460838 NCBI chrNW_004955497:1,338,959...1,454,788
Ensembl chrNW_004955497:1,338,904...1,455,122
JBrowse link
G Iqcb1 IQ motif containing B1 located_in ISO (MGI:3763297|PMID:15723066)
(PMID:15723066)
HGNC-UCL PMID:15723066 MGI:3763297 NCBI chrNW_004955427:21,120,012...21,171,838
Ensembl chrNW_004955427:21,118,703...21,171,683
JBrowse link
G Kiaa1549 KIAA1549 ortholog ISO (MGI:6393223|PMID:30120214) UniProt PMID:30120214 MGI:6393223 NCBI chrNW_004955494:4,067,813...4,152,368
Ensembl chrNW_004955494:4,068,854...4,147,102
JBrowse link
G Kif17 kinesin family member 17 ISO (MGI:4353477|PMID:19384852) MGI PMID:19384852 MGI:4353477 NCBI chrNW_004955452:1,197,839...1,239,209 JBrowse link
G Kif3a kinesin family member 3A ISO (MGI:3839506|PMID:19208653) UniProt PMID:19208653 MGI:3839506 NCBI chrNW_004955408:4,072,823...4,115,975
Ensembl chrNW_004955408:4,069,639...4,115,998
JBrowse link
G Lca5 lebercilin LCA5 located_in ISO PMID:17546029
(PMID:21606596)
(MGI:5050784|PMID:21606596)
UniProt PMID:17546029 PMID:21606596 MGI:5050784 RGD:14397561 NCBI chrNW_004955502:7,325,650...7,373,641
Ensembl chrNW_004955502:7,325,103...7,376,368
JBrowse link
G Mak male germ cell associated kinase ISO (MGI:5298333|PMID:21148103) MGI PMID:21148103 MGI:5298333 NCBI chrNW_004955465:3,556,733...3,615,126
Ensembl chrNW_004955465:3,556,490...3,616,203
JBrowse link
G Myo7a myosin VIIA ISO (MGI:1343017|PMID:10414956) MGI PMID:10414956 MGI:1343017 NCBI chrNW_004955414:14,576,356...14,647,500
Ensembl chrNW_004955414:14,576,356...14,647,500
JBrowse link
G Nphp1 nephrocystin 1 ISO (MGI:4821072|PMID:16885411) UniProt PMID:16885411 MGI:4821072 NCBI chrNW_004955470:3,261,455...3,305,989
Ensembl chrNW_004955470:3,260,557...3,307,797
JBrowse link
G Nphp4 nephrocystin 4 ISO (MGI:4867588|PMID:21078623) MGI PMID:21078623 MGI:4867588 NCBI chrNW_004955486:6,442,058...6,547,451
Ensembl chrNW_004955486:6,448,442...6,547,488
JBrowse link
G Rp1 RP1 axonemal microtubule associated part_of ISO (MGI:2156902|PMID:11773008), (MGI:2676521|PMID:14507858)
(PMID:11767049)
UniProt
MGI
PMID:11767049 PMID:11773008 PMID:14507858 MGI:2156902 MGI:2676521 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Rp1l1 RP1 like 1 ISO (MGI:4353917|PMID:19657028) UniProt PMID:19657028 MGI:4353917 NCBI chrNW_004955403:52,180,612...52,200,569 JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator ISO (MGI:1354839|PMID:10725384) MGI PMID:10725384 MGI:1354839 NCBI chrNW_004955601:398,772...453,271 JBrowse link
G Rpgrip1 RPGR interacting protein 1 ISO (MGI:5608598|PMID:25398945) UniProt PMID:25398945 MGI:5608598 NCBI chrNW_004955550:2,015,319...2,073,627
Ensembl chrNW_004955550:2,021,838...2,073,498
JBrowse link
G Rpgrip1l RPGRIP1 like ISO RGD PMID:17558407 RGD:11537356 NCBI chrNW_004955433:11,321,504...11,423,981
Ensembl chrNW_004955433:11,322,590...11,424,569
JBrowse link
G Septin2 septin 2 located_in ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chrNW_004955542:401,081...444,304
Ensembl chrNW_004955542:401,081...443,962
JBrowse link
G Spata7 spermatogenesis associated 7 ISO (MGI:5608598|PMID:25398945) UniProt PMID:25398945 MGI:5608598 NCBI chrNW_004955438:11,033,089...11,069,178
Ensembl chrNW_004955438:11,033,998...11,069,128
JBrowse link
G Sptbn5 spectrin beta, non-erythrocytic 5 part_of ISO (PMID:23704327) MGI PMID:23704327 NCBI chrNW_004955416:8,643,177...8,684,469 JBrowse link
G Tbcc tubulin folding cofactor C located_in ISO (PMID:12417528) UniProt PMID:12417528 NCBI chrNW_004955437:8,808,021...8,809,598 JBrowse link
G Tmem237 transmembrane protein 237 ISO (MGI:4830641|PMID:20375344) MGI PMID:20375344 MGI:4830641 NCBI chrNW_004955403:148,181...173,350
Ensembl chrNW_004955403:148,183...172,386
JBrowse link
G Topors TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase located_in ISO (MGI:4939557|PMID:21159800)
(PMID:21159800)
BHF-UCL PMID:21159800 MGI:4939557 NCBI chrNW_004955472:3,073,090...3,076,607 JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 ISO (MGI:2677624|PMID:14520415) BHF-UCL PMID:14520415 MGI:2677624 NCBI chrNW_004955438:11,410,196...11,466,044
Ensembl chrNW_004955438:11,409,982...11,466,523
JBrowse link
G Ush1g USH1 protein network component sans ISO (MGI:3774983|PMID:17906286) MGI PMID:17906286 MGI:3774983 NCBI chrNW_004955553:1,788,443...1,795,139
Ensembl chrNW_004955553:1,788,401...1,796,441
JBrowse link
G Ush2a usherin colocalizes_with ISO (MGI:3774983|PMID:17906286), (MGI:4950337|PMID:21212183) RGD
MGI
PMID:16434480 PMID:17906286 PMID:21212183 MGI:3774983 MGI:4950337 RGD:1600128 NCBI chrNW_004955406:1,837,831...2,499,664
Ensembl chrNW_004955406:1,838,885...2,496,980
JBrowse link
G Wdr19 WD repeat domain 19 ISO (MGI:3839506|PMID:19208653) UniProt PMID:19208653 MGI:3839506 NCBI chrNW_004955443:8,053,847...8,122,918
Ensembl chrNW_004955443:8,053,847...8,123,110
JBrowse link
G Whrn whirlin colocalizes_with ISO (MGI:3774983|PMID:17906286), (MGI:4950337|PMID:21212183) RGD
MGI
PMID:16434480 PMID:17906286 PMID:21212183 MGI:3774983 MGI:4950337 RGD:1600128 NCBI chrNW_004955419:13,116,001...13,207,266
Ensembl chrNW_004955419:13,116,001...13,207,266
JBrowse link
photoreceptor disc membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rho rhodopsin located_in ISO (PMID:25664179) UniProt PMID:25664179 NCBI chrNW_004955429:17,787,337...17,791,982
Ensembl chrNW_004955429:17,787,337...17,791,982
JBrowse link
G Sptbn5 spectrin beta, non-erythrocytic 5 part_of ISO (PMID:23704327) MGI PMID:23704327 NCBI chrNW_004955416:8,643,177...8,684,469 JBrowse link
photoreceptor distal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004955439:1,277,185...1,460,296
Ensembl chrNW_004955439:1,276,760...1,474,202
JBrowse link
G Cep290 centrosomal protein 290 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004955405:25,533,037...25,607,021
Ensembl chrNW_004955405:25,533,525...25,606,212
JBrowse link
G Nphp1 nephrocystin 1 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004955470:3,261,455...3,305,989
Ensembl chrNW_004955470:3,260,557...3,307,797
JBrowse link
G Nphp4 nephrocystin 4 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004955486:6,442,058...6,547,451
Ensembl chrNW_004955486:6,448,442...6,547,488
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004955601:398,772...453,271 JBrowse link
G Rpgrip1 RPGR interacting protein 1 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004955550:2,015,319...2,073,627
Ensembl chrNW_004955550:2,021,838...2,073,498
JBrowse link
G Spata7 spermatogenesis associated 7 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004955438:11,033,089...11,069,178
Ensembl chrNW_004955438:11,033,998...11,069,128
JBrowse link
photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abca4 ATP binding cassette subfamily A member 4 ISO (MGI:5525015|PMID:23943788) MGI PMID:23943788 MGI:5525015 NCBI chrNW_004955423:612,098...738,702
Ensembl chrNW_004955423:612,098...736,035
JBrowse link
G Ahi1 Abelson helper integration site 1 ISO (MGI:4461813|PMID:20592197) MGI PMID:20592197 MGI:4461813 NCBI chrNW_004955439:1,277,185...1,460,296
Ensembl chrNW_004955439:1,276,760...1,474,202
JBrowse link
G Arr3 arrestin 3 ISO (MGI:1354839|PMID:10725384), (MGI:3616100|PMID:12486395) MGI PMID:10725384 PMID:12486395 MGI:1354839 MGI:3616100 NCBI chrNW_004955475:9,819,783...9,835,526
Ensembl chrNW_004955475:9,819,792...9,835,200
JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 ISO (MGI:5525015|PMID:23943788) MGI PMID:23943788 MGI:5525015 NCBI chrNW_004955450:4,624,634...4,668,470
Ensembl chrNW_004955450:4,631,266...4,662,719
JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 ISO (MGI:5525015|PMID:23943788) MGI PMID:23943788 MGI:5525015 NCBI chrNW_004955428:18,682,072...18,724,560
Ensembl chrNW_004955428:18,681,856...18,724,560
JBrowse link
G Bsg basigin (Ok blood group) ISO (MGI:6436439|PMID:25957687) UniProt PMID:25957687 MGI:6436439 NCBI chrNW_004955495:7,148,806...7,156,296 JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F ISO RGD PMID:11526344 RGD:632484 NCBI chrNW_004955543:692,035...717,364
Ensembl chrNW_004955543:692,035...717,364
JBrowse link
G Cep250 centrosomal protein 250 ISO (MGI:6254746|PMID:28005958) UniProt PMID:28005958 MGI:6254746 NCBI chrNW_004955422:25,932,377...25,978,524 JBrowse link
G Cep290 centrosomal protein 290 ISO (MGI:5525015|PMID:23943788) MGI PMID:23943788 MGI:5525015 NCBI chrNW_004955405:25,533,037...25,607,021
Ensembl chrNW_004955405:25,533,525...25,606,212
JBrowse link
G Cerkl ceramide kinase like ISO (MGI:5571037|PMID:23142158) MGI PMID:23142158 MGI:5571037 NCBI chrNW_004955403:15,620,047...15,727,957 JBrowse link
G Cfap410 cilia and flagella associated protein 410 located_in ISO (PMID:27548899) UniProt PMID:27548899 NCBI chrNW_004955407:41,120,820...41,128,089
Ensembl chrNW_004955407:41,121,048...41,126,996
JBrowse link
G Cib2 calcium and integrin binding family member 2 ISO (MGI:5487486|PMID:23023331) UniProt PMID:23023331 MGI:5487486 NCBI chrNW_004955450:660,655...674,726
Ensembl chrNW_004955450:659,383...675,634
JBrowse link
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 ISO (MGI:1354839|PMID:10725384), (MGI:3527312|PMID:15634774), (MGI:4461813|PMID:20592197) MGI PMID:10725384 PMID:15634774 PMID:20592197 MGI:1354839 MGI:3527312 MGI:4461813 NCBI chrNW_004955443:615,061...649,693
Ensembl chrNW_004955443:639,096...649,606
JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 ISO (MGI:1355614|PMID:10813773), (MGI:3527312|PMID:15634774) MGI PMID:10813773 PMID:15634774 MGI:1355614 MGI:3527312 NCBI chrNW_004955470:4,884,054...4,907,151
Ensembl chrNW_004955470:4,884,309...4,906,902
JBrowse link
G Cngb1 cyclic nucleotide gated channel subunit beta 1 ISO (MGI:5587954|PMID:22183407) MGI PMID:22183407 MGI:5587954 NCBI chrNW_004955433:15,467,042...15,556,471 JBrowse link
G Cngb3 cyclic nucleotide gated channel subunit beta 3 ISO (MGI:3527312|PMID:15634774) MGI PMID:15634774 MGI:3527312 NCBI chrNW_004955417:4,164,328...4,288,516
Ensembl chrNW_004955417:4,168,766...4,300,437
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 located_in ISO (PMID:2534964)
(MGI:3778702|PMID:18367617), (MGI:4461813|PMID:20592197), (MGI:6383261|PMID:31696965)
RGD
UniProt
MGI
PMID:2534964 PMID:10396627 PMID:11931744 PMID:18367617 PMID:20592197 PMID:31696965 MGI:3778702 MGI:4461813 MGI:6383261 RGD:1599009 RGD:6893629 NCBI chrNW_004955532:2,018,850...2,023,603
Ensembl chrNW_004955532:2,018,850...2,023,603
JBrowse link
G Gnat2 G protein subunit alpha transducin 2 located_in ISO (PMID:2534964) RGD
UniProt
PMID:2534964 PMID:17591908 RGD:2302146 NCBI chrNW_004955435:13,009,147...13,021,968
Ensembl chrNW_004955435:13,009,147...13,021,968
JBrowse link
G Gnb1 G protein subunit beta 1 ISO (MGI:3778702|PMID:18367617) MGI PMID:18367617 MGI:3778702 NCBI chrNW_004955486:9,165,850...9,192,306
Ensembl chrNW_004955486:9,165,850...9,193,066
JBrowse link
G Gnb5 G protein subunit beta 5 ISO (MGI:5507748|PMID:23555598) MGI PMID:23555598 MGI:5507748 NCBI chrNW_004955409:2,621,144...2,642,298
Ensembl chrNW_004955409:2,619,718...2,641,308
JBrowse link
G Gngt1 G protein subunit gamma transducin 1 ISO RGD PMID:10396627 PMID:11931744 RGD:1599009 RGD:6893629 NCBI chrNW_004955432:10,653,508...10,657,811
Ensembl chrNW_004955432:10,643,674...10,658,933
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 ISO (MGI:5587954|PMID:22183407) MGI PMID:22183407 MGI:5587954 NCBI chrNW_004955404:343,009...353,683
Ensembl chrNW_004955404:343,009...353,683
JBrowse link
G Guca1a guanylate cyclase activator 1A ISO RGD PMID:9620085 RGD:1599354 NCBI chrNW_004955437:8,370,553...8,382,640
Ensembl chrNW_004955437:8,376,091...8,382,640
JBrowse link
G Guca1b guanylate cyclase activator 1B ISO RGD PMID:9620085 RGD:1599354 NCBI chrNW_004955437:8,384,692...8,390,946
Ensembl chrNW_004955437:8,382,299...8,390,946
JBrowse link
G Guca2b guanylate cyclase activator 2B ISO (MGI:5587954|PMID:22183407) MGI PMID:22183407 MGI:5587954 NCBI chrNW_004955537:1,798,249...1,801,673
Ensembl chrNW_004955537:1,798,249...1,801,673
JBrowse link
G Gucy2d guanylate cyclase 2D, retinal located_in ISO (PMID:7912093) UniProt PMID:7912093 NCBI chrNW_004955467:8,938,057...8,949,684
Ensembl chrNW_004955467:8,938,057...8,949,684
JBrowse link
G Hnf1a HNF1 homeobox A ISO (MGI:1334099|PMID:10090727) MGI PMID:10090727 MGI:1334099 NCBI chrNW_004955455:10,694,102...10,717,613
Ensembl chrNW_004955455:10,694,102...10,717,613
JBrowse link
G Ift140 intraflagellar transport 140 ISO (MGI:5604762|PMID:24619649) MGI PMID:24619649 MGI:5604762 NCBI chrNW_004955442:15,625,429...15,719,006
Ensembl chrNW_004955442:15,630,501...15,718,484
JBrowse link
G Ift20 intraflagellar transport 20 ISO (MGI:5317282|PMID:21307337) MGI PMID:21307337 MGI:5317282 NCBI chrNW_004955481:4,799,548...4,807,751
Ensembl chrNW_004955481:4,799,548...4,807,751
JBrowse link
G Inha inhibin subunit alpha ISO RGD PMID:7596220 RGD:2290440 NCBI chrNW_004955453:13,902,443...13,905,008
Ensembl chrNW_004955453:13,902,277...13,905,008
JBrowse link
G Iqcb1 IQ motif containing B1 ISO (MGI:3763297|PMID:15723066) HGNC-UCL PMID:15723066 MGI:3763297 NCBI chrNW_004955427:21,120,012...21,171,838
Ensembl chrNW_004955427:21,118,703...21,171,683
JBrowse link
G Lyar Ly1 antibody reactive ISO (MGI:6107438|PMID:25735755) UniProt PMID:25735755 MGI:6107438 NCBI chrNW_004955514:5,358,843...5,375,990
Ensembl chrNW_004955514:5,358,843...5,376,112
JBrowse link
G Mak male germ cell associated kinase ISO (MGI:5298333|PMID:21148103) MGI PMID:21148103 MGI:5298333 NCBI chrNW_004955465:3,556,733...3,615,126
Ensembl chrNW_004955465:3,556,490...3,616,203
JBrowse link
G Map1a microtubule associated protein 1A ISO (MGI:5587952|PMID:24664738) MGI PMID:24664738 MGI:5587952 NCBI chrNW_004955416:10,052,964...10,073,318
Ensembl chrNW_004955416:10,053,010...10,071,421
JBrowse link
G Map1b microtubule associated protein 1B ISO (MGI:5587952|PMID:24664738) MGI PMID:24664738 MGI:5587952 NCBI chrNW_004955575:914,607...1,020,971
Ensembl chrNW_004955575:913,723...1,021,028
JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase ISO RGD PMID:11861639 RGD:1299193 NCBI chrNW_004955470:2,065,468...2,167,909
Ensembl chrNW_004955470:2,065,411...2,167,909
JBrowse link
G Myo3b myosin IIIB ISO (MGI:4352610|PMID:19332056) MGI PMID:19332056 MGI:4352610 NCBI chrNW_004955449:4,128,816...4,546,651
Ensembl chrNW_004955449:4,129,823...4,546,296
JBrowse link
G Myo5a myosin VA ISO (MGI:3047015|PMID:14978221) MGI PMID:14978221 MGI:3047015 NCBI chrNW_004955409:2,409,503...2,530,539
Ensembl chrNW_004955409:2,428,815...2,530,012
JBrowse link
G Myo7a myosin VIIA NOT
located_in
NOT|located_in
ISO PMID:8842737
(PMID:8842737)
(MGI:81971|PMID:8842737)
UniProt PMID:8842737 MGI:81971 RGD:8553559 NCBI chrNW_004955414:14,576,356...14,647,500
Ensembl chrNW_004955414:14,576,356...14,647,500
JBrowse link
G Myrip myosin VIIA and Rab interacting protein ISO (MGI:2180422|PMID:11964381) UniProt PMID:11964381 MGI:2180422 NCBI chrNW_004955420:29,542,479...29,697,646
Ensembl chrNW_004955420:29,540,027...29,696,504
JBrowse link
G Nup42 nucleoporin 42 ISO (MGI:5587954|PMID:22183407) MGI PMID:22183407 MGI:5587954 NCBI chrNW_004955410:25,487,481...25,515,863
Ensembl chrNW_004955410:25,487,189...25,518,582
JBrowse link
G Ocrl OCRL inositol polyphosphate-5-phosphatase located_in ISO (PMID:22543976) UniProt PMID:22543976 NCBI chrNW_004955473:5,429,084...5,482,377
Ensembl chrNW_004955473:5,431,395...5,482,385
JBrowse link
G Opn1sw opsin 1, short wave sensitive ISO (MGI:1354839|PMID:10725384), (MGI:1355614|PMID:10813773), (MGI:2654998|PMID:12651948), (MGI:4352610|PMID:19332056), (MGI:5488667|PMID:23351594), (MGI:5494796|PMID:23386608), (MGI:5587954|PMID:22183407), (MGI:6305433|PMID:26420485) RGD
MGI
PMID:10725384 PMID:10813773 PMID:12651948 PMID:19332056 PMID:20209167 PMID:22183407 PMID:23351594 PMID:23386608 PMID:26420485 MGI:1354839 MGI:1355614 MGI:2654998 MGI:4352610 MGI:5488667 MGI:5494796 MGI:5587954 MGI:6305433 RGD:6893562 NCBI chrNW_004955479:9,573,594...9,576,668
Ensembl chrNW_004955479:9,573,594...9,576,668
JBrowse link
G Pcare photoreceptor cilium actin regulator ISO (MGI:5636574|PMID:25616964) MGI PMID:25616964 MGI:5636574 NCBI chrNW_004955469:10,919,776...10,930,392
Ensembl chrNW_004955469:10,921,124...10,928,862
JBrowse link
G Pcdh15 protocadherin related 15 located_in ISO (MGI:3722521|PMID:14570705)
(PMID:14570705)
MGI
HGNC-UCL
PMID:14570705 MGI:3722521 NCBI chrNW_004955425:8,443,523...9,203,177
Ensembl chrNW_004955425:8,428,680...8,899,028
JBrowse link
G Pdc phosducin ISO (MGI:3778702|PMID:18367617) MGI PMID:18367617 MGI:3778702 NCBI chrNW_004955406:24,857,791...24,873,057
Ensembl chrNW_004955406:24,857,642...24,873,307
JBrowse link
G Pde6b phosphodiesterase 6B ISO (MGI:5587954|PMID:22183407) MGI PMID:22183407 MGI:5587954 NCBI chrNW_004955514:234,972...279,420
Ensembl chrNW_004955514:234,972...279,420
JBrowse link
G Prcd photoreceptor disc component ISO (MGI:5819338|PMID:23672200) HGNC PMID:23672200 MGI:5819338 NCBI chrNW_004955506:5,751,963...5,764,767
Ensembl chrNW_004955506:5,751,963...5,764,766
JBrowse link
G Prkca protein kinase C alpha ISO (MGI:1355614|PMID:10813773) MGI PMID:10813773 MGI:1355614 NCBI chrNW_004955478:5,686,639...6,090,356
Ensembl chrNW_004955478:5,686,640...6,083,967
JBrowse link
G Prom1 prominin 1 ISO (MGI:3838023|PMID:19228982) UniProt PMID:19228982 MGI:3838023 NCBI chrNW_004955480:7,955,501...8,059,537
Ensembl chrNW_004955480:7,961,389...8,059,589
JBrowse link
G Prph peripherin ISO (MGI:5587954|PMID:22183407) MGI PMID:22183407 MGI:5587954 NCBI chrNW_004955500:8,106,371...8,117,221
Ensembl chrNW_004955500:8,107,847...8,117,290
JBrowse link
G Prph2 peripherin 2 ISO (MGI:5587954|PMID:22183407), (MGI:5905515|PMID:28053051), (MGI:6305433|PMID:26420485) MGI PMID:22183407 PMID:26420485 PMID:28053051 MGI:5587954 MGI:5905515 MGI:6305433 NCBI chrNW_004955437:8,784,211...8,794,789
Ensembl chrNW_004955437:8,782,183...8,795,017
JBrowse link
G Ptgs1 prostaglandin-endoperoxide synthase 1 ISO (MGI:2429331|PMID:12355421) MGI PMID:12355421 MGI:2429331 NCBI chrNW_004955419:5,678,750...5,699,305
Ensembl chrNW_004955419:5,678,694...5,699,305
JBrowse link
G Ptprk protein tyrosine phosphatase receptor type K ISO (MGI:3794228|PMID:18308476) MGI PMID:18308476 MGI:3794228 NCBI chrNW_004955436:8,975,742...9,371,608
Ensembl chrNW_004955436:8,975,554...9,380,971
JBrowse link
G Rab27a RAB27A, member RAS oncogene family ISO (MGI:2180422|PMID:11964381) UniProt PMID:11964381 MGI:2180422 NCBI chrNW_004955409:588,725...621,874
Ensembl chrNW_004955409:588,254...621,874
JBrowse link
G Rapgef4 Rap guanine nucleotide exchange factor 4 ISO RGD PMID:19883736 RGD:2314691 NCBI chrNW_004955449:2,172,354...2,453,367
Ensembl chrNW_004955449:2,171,924...2,462,451
JBrowse link
G Rd3 RD3 regulator of GUCY2D ISO (MGI:6368063|PMID:29515371) UniProt PMID:29515371 MGI:6368063 NCBI chrNW_004955489:896,964...903,855 JBrowse link
G Rgs9 regulator of G protein signaling 9 ISO (MGI:5507748|PMID:23555598) MGI PMID:23555598 MGI:5507748 NCBI chrNW_004955478:4,614,730...4,683,152
Ensembl chrNW_004955478:4,614,701...4,683,167
JBrowse link
G Rgs9bp regulator of G protein signaling 9 binding protein ISO (MGI:5507748|PMID:23555598) MGI PMID:23555598 MGI:5507748 NCBI chrNW_004955468:5,311,318...5,313,612
Ensembl chrNW_004955468:5,312,880...5,313,587
JBrowse link
G Rho rhodopsin part_of ISO (PMID:11767049), (PMID:23704327)
(MGI:1354839|PMID:10725384), (MGI:2654998|PMID:12651948), (MGI:4352610|PMID:19332056), (MGI:4461813|PMID:20592197), (MGI:4949555|PMID:21444805), (MGI:4950337|PMID:21212183), (MGI:5462139|PMID:22869374), (MGI:5467890|PMID:23178122), (MGI:5488667|PMID:23351594), (MGI:5525015|PMID:23943788), (MGI:5587954|PMID:22183407), (MGI:5607451|PMID:25224828), (MGI:6305433|PMID:26420485)
RGD
MGI
PMID:8814134 PMID:10725384 PMID:11767049 PMID:12651948 PMID:19332056 PMID:20592197 PMID:21212183 PMID:21444805 PMID:22183407 PMID:22869374 PMID:23178122 PMID:23351594 PMID:23704327 PMID:23943788 PMID:25224828 PMID:26420485 MGI:1354839 MGI:2654998 MGI:4352610 MGI:4461813 MGI:4949555 MGI:4950337 MGI:5462139 MGI:5467890 MGI:5488667 MGI:5525015 MGI:5587954 MGI:5607451 MGI:6305433 RGD:6893595 NCBI chrNW_004955429:17,787,337...17,791,982
Ensembl chrNW_004955429:17,787,337...17,791,982
JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:4461813|PMID:20592197), (MGI:5587954|PMID:22183407), (MGI:6305433|PMID:26420485) MGI PMID:20592197 PMID:22183407 PMID:26420485 MGI:4461813 MGI:5587954 MGI:6305433 NCBI chrNW_004955599:578,165...580,055
Ensembl chrNW_004955599:573,426...579,812
JBrowse link
G Rp1 RP1 axonemal microtubule associated ISO (MGI:2676521|PMID:14507858), (MGI:3629826|PMID:15269252) UniProt PMID:14507858 PMID:15269252 MGI:2676521 MGI:3629826 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Rp1l1 RP1 like 1 ISO (MGI:4353917|PMID:19657028) UniProt PMID:19657028 MGI:4353917 NCBI chrNW_004955403:52,180,612...52,200,569 JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator located_in ISO (PMID:12140192) UniProt PMID:12140192 NCBI chrNW_004955601:398,772...453,271 JBrowse link
G Sag S-antigen visual arrestin located_in ISO (PMID:3720866)
(MGI:5462139|PMID:22869374)
RGD
UniProt
MGI
PMID:3720866 PMID:10396627 PMID:22869374 MGI:5462139 RGD:6893629 NCBI chrNW_004955453:2,845,561...2,878,342
Ensembl chrNW_004955453:2,844,925...2,878,846
JBrowse link
G Shank2 SH3 and multiple ankyrin repeat domains 2 ISO (MGI:5306573|PMID:19299912) CACAO PMID:19299912 MGI:5306573 NCBI chrNW_004955422:15,295,800...15,818,067
Ensembl chrNW_004955422:15,295,772...15,814,711
JBrowse link
G Tulp1 TUB like protein 1 ISO (MGI:4397555|PMID:19218615) UniProt PMID:19218615 MGI:4397555 NCBI chrNW_004955437:3,405,218...3,417,079 JBrowse link
G Ush1c USH1 protein network component harmonin ISO (MGI:2679149|PMID:14578428), (MGI:3774983|PMID:17906286) RGD
MGI
PMID:14578428 PMID:17906286 MGI:2679149 MGI:3774983 RGD:1303964 NCBI chrNW_004955414:32,303,045...32,351,401
Ensembl chrNW_004955414:32,298,759...32,351,505
JBrowse link
photoreceptor outer segment membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdhr1 cadherin related family member 1 ISO (MGI:3814988|PMID:18654668) BHF-UCL PMID:18654668 MGI:3814988 NCBI chrNW_004955510:3,709,206...3,727,448
Ensembl chrNW_004955510:3,708,723...3,728,926
JBrowse link
G Cnga1 cyclic nucleotide gated channel subunit alpha 1 ISO (MGI:3814988|PMID:18654668) BHF-UCL PMID:18654668 MGI:3814988 NCBI chrNW_004955443:615,061...649,693
Ensembl chrNW_004955443:639,096...649,606
JBrowse link
G Gnb1 G protein subunit beta 1 ISO RGD PMID:11931744 RGD:1599009 NCBI chrNW_004955486:9,165,850...9,192,306
Ensembl chrNW_004955486:9,165,850...9,193,066
JBrowse link
G Gucy2d guanylate cyclase 2D, retinal located_in ISO PMID:9153227
(MGI:5049799|PMID:21598940)
UniProt PMID:9153227 PMID:21598940 MGI:5049799 RGD:1599625 NCBI chrNW_004955467:8,938,057...8,949,684
Ensembl chrNW_004955467:8,938,057...8,949,684
JBrowse link
G Phlpp2 PH domain and leucine rich repeat protein phosphatase 2 ISO RGD PMID:20089132 RGD:5131540 NCBI chrNW_004955484:4,353,950...4,419,891
Ensembl chrNW_004955484:4,353,950...4,420,873
JBrowse link
G Prcd photoreceptor disc component located_in ISO (MGI:5812604|PMID:27613864), (MGI:6271388|PMID:27509380)
(PMID:27613864)
UniProt PMID:27509380 PMID:27613864 MGI:5812604 MGI:6271388 NCBI chrNW_004955506:5,751,963...5,764,767
Ensembl chrNW_004955506:5,751,963...5,764,766
JBrowse link
G Prom1 prominin 1 located_in ISO (PMID:18654668) BHF-UCL PMID:18654668 NCBI chrNW_004955480:7,955,501...8,059,537
Ensembl chrNW_004955480:7,961,389...8,059,589
JBrowse link
G Prph peripherin ISO (MGI:1343017|PMID:10414956) MGI PMID:10414956 MGI:1343017 NCBI chrNW_004955500:8,106,371...8,117,221
Ensembl chrNW_004955500:8,107,847...8,117,290
JBrowse link
G Rdh11 retinol dehydrogenase 11 NOT ISO (MGI:3584215|PMID:15790565) MGI PMID:15790565 MGI:3584215 NCBI chrNW_004955466:2,506,641...2,521,506 JBrowse link
G Rho rhodopsin located_in ISO (PMID:19934218) RGD
UniProt
PMID:2209754 PMID:19934218 RGD:6893561 NCBI chrNW_004955429:17,787,337...17,791,982
Ensembl chrNW_004955429:17,787,337...17,791,982
JBrowse link
G Rom1 retinal outer segment membrane protein 1 ISO (MGI:3814988|PMID:18654668) BHF-UCL PMID:18654668 MGI:3814988 NCBI chrNW_004955599:578,165...580,055
Ensembl chrNW_004955599:573,426...579,812
JBrowse link
photoreceptor proximal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep290 centrosomal protein 290 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004955405:25,533,037...25,607,021
Ensembl chrNW_004955405:25,533,525...25,606,212
JBrowse link
rod photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep290 centrosomal protein 290 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004955405:25,533,037...25,607,021
Ensembl chrNW_004955405:25,533,525...25,606,212
JBrowse link
G Gucy2f guanylate cyclase 2F, retinal ISO (MGI:4867355|PMID:21078983) UniProt PMID:21078983 MGI:4867355 NCBI chrNW_004955490:6,331,247...6,437,563
Ensembl chrNW_004955490:6,331,247...6,437,563
JBrowse link
G Rd3 RD3 regulator of GUCY2D ISO (MGI:4867355|PMID:21078983) UniProt PMID:21078983 MGI:4867355 NCBI chrNW_004955489:896,964...903,855 JBrowse link
G Spata7 spermatogenesis associated 7 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chrNW_004955438:11,033,089...11,069,178
Ensembl chrNW_004955438:11,033,998...11,069,128
JBrowse link
G Tmem237 transmembrane protein 237 ISO (MGI:4830641|PMID:20375344) MGI PMID:20375344 MGI:4830641 NCBI chrNW_004955403:148,181...173,350
Ensembl chrNW_004955403:148,183...172,386
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 12108
    cellular anatomical entity 11965
      organelle 9439
        cilium 579
          non-motile cilium 148
            9+0 non-motile cilium 115
              photoreceptor cell cilium + 102
Path 2
Term Annotations click to browse term
  cellular_component 12108
    cellular anatomical entity 11965
      cell projection 2040
        plasma membrane bounded cell projection 2013
          cilium 579
            non-motile cilium 148
              9+0 non-motile cilium 115
                photoreceptor cell cilium + 102
paths to the root