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ONTOLOGY REPORT - ANNOTATIONS


Term:9+0 non-motile cilium
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Accession:GO:0097731 term browser browse the term
Definition:A non-motile cilium where the axoneme has a ring of nine outer microtubule doublets but no central microtubules (and is therefore called a 9+0 axoneme).
Comment:This type of cilia may be present in solitary (authentic primary cilia in many cell types) or in multiple copies (e.g. in Grueneberg ganglion neurons).
Synonyms:exact_synonym: 9+0 immotile cilium
 narrow_synonym: primary cilium


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9+0 non-motile cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1H1orf115 chromosome 1 C1orf115 homolog located_in ISO (PMID:29257953) GO_Central PMID:29257953 NCBI chr 1:196,276,253...196,285,549 JBrowse link
G C4H4orf47 chromosome 4 C4orf47 homolog located_in ISO (PMID:29257953) GO_Central PMID:29257953 NCBI chr 4:177,589,308...177,612,834
Ensembl chr 4:189,805,849...189,828,919
JBrowse link
G DYNLL2 dynein light chain LC8-type 2 located_in ISO (PMID:29257953) GO_Central PMID:29257953 NCBI chr17:52,161,701...52,169,538
Ensembl chr17:57,021,357...57,025,750
JBrowse link
G IFT80 intraflagellar transport 80 ISO (MGI:5807019|PMID:26996322) MGI PMID:26996322 MGI:5807019 NCBI chr 3:157,279,076...157,421,478
Ensembl chr 3:165,329,056...165,454,905
JBrowse link
G IFTAP intraflagellar transport associated protein ISO (MGI:5807035|PMID:26703212) MGI PMID:26703212 MGI:5807035 NCBI chr11:36,560,918...36,623,870
Ensembl chr11:36,433,630...36,496,483
JBrowse link
G PHYH phytanoyl-CoA 2-hydroxylase located_in ISO (PMID:29257953) GO_Central PMID:29257953 NCBI chr10:13,277,804...13,300,115
Ensembl chr10:13,251,223...13,636,018
JBrowse link
G PKHD1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin ISO (MGI:5604763|PMID:24586199) MGI PMID:24586199 MGI:5604763 NCBI chr 6:51,166,516...51,635,057
Ensembl chr 6:52,435,462...52,903,309
JBrowse link
G SMO smoothened, frizzled class receptor ISO (MGI:5807019|PMID:26996322) MGI PMID:26996322 MGI:5807019 NCBI chr 7:121,143,968...121,168,873
Ensembl chr 7:133,668,304...133,693,048
JBrowse link
G TTLL4 tubulin tyrosine ligase like 4 ISO (MGI:3771321|PMID:17499049) MGI PMID:17499049 MGI:3771321 NCBI chr2B:105,968,840...106,016,034
Ensembl chr2B:224,563,691...224,610,431
JBrowse link
G TTLL5 tubulin tyrosine ligase like 5 ISO (MGI:3771321|PMID:17499049) MGI PMID:17499049 MGI:3771321 NCBI chr14:56,216,214...56,513,718
Ensembl chr14:75,058,897...75,356,494
JBrowse link
G TTLL6 tubulin tyrosine ligase like 6 ISO (MGI:3771321|PMID:17499049) MGI PMID:17499049 MGI:3771321 NCBI chr17:8,719,010...8,774,299
Ensembl chr17:8,905,029...8,953,080
JBrowse link
G TTLL7 tubulin tyrosine ligase like 7 ISO (MGI:3771321|PMID:17499049) MGI PMID:17499049 MGI:3771321 NCBI chr 1:116,429,645...116,564,244
Ensembl chr 1:85,296,202...85,426,017
JBrowse link
G TULP3 TUB like protein 3 part_of ISO (PMID:20889716) MGI PMID:20889716 NCBI chr12:3,012,890...3,061,831
Ensembl chr12:2,944,769...2,993,278
JBrowse link
cone photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GUCA1A guanylate cyclase activator 1A located_in ISO (MGI:6437034|PMID:9620085)
(PMID:9620085)
UniProt PMID:9620085 MGI:6437034 NCBI chr 6:41,693,593...41,774,591
Ensembl chr 6:43,045,307...43,070,520
JBrowse link
G GUCA1B guanylate cyclase activator 1B located_in ISO (PMID:9620085) UniProt PMID:9620085 NCBI chr 6:41,771,537...41,783,364
Ensembl chr 6:43,072,469...43,083,838
JBrowse link
G RD3 RD3 regulator of GUCY2D ISO (MGI:4867355|PMID:21078983) UniProt PMID:21078983 MGI:4867355 NCBI chr 1:187,044,054...187,060,441
Ensembl chr 1:191,907,989...191,924,365
JBrowse link
G TMEM237 transmembrane protein 237 ISO (MGI:4830641|PMID:20375344) MGI PMID:20375344 MGI:4830641 NCBI chr2B:88,873,362...88,896,689
Ensembl chr2B:207,028,061...207,051,206
JBrowse link
photoreceptor cell cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP1A4 ATPase Na+/K+ transporting subunit alpha 4 located_in ISO (PMID:26373354) ARUK-UCL PMID:26373354 NCBI chr 1:135,504,929...135,540,651
Ensembl chr 1:139,426,556...139,462,393
JBrowse link
G CFAP410 cilia and flagella associated protein 410 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr21:30,585,802...30,595,981
Ensembl chr21:43,881,219...43,889,891
JBrowse link
G FAM161A FAM161 centrosomal protein A ISO (MGI:5438885|PMID:22791751) UniProt PMID:22791751 MGI:5438885 NCBI chr2A:61,907,508...61,936,530
Ensembl chr2A:63,041,759...63,070,172
JBrowse link
G IFT52 intraflagellar transport 52 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr20:39,929,523...39,986,072
Ensembl chr20:41,023,517...41,080,500
JBrowse link
G PEX6 peroxisomal biogenesis factor 6 located_in ISO (MGI:5816430|PMID:26593283)
(PMID:26593283)
UniProt PMID:26593283 MGI:5816430 NCBI chr 6:42,554,509...42,570,701
Ensembl chr 6:43,850,129...43,865,355
JBrowse link
G RP1 RP1 axonemal microtubule associated ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr 8:50,979,412...51,311,431
Ensembl chr 8:48,419,033...48,583,879
JBrowse link
G SDCCAG8 SHH signaling and ciliogenesis regulator SDCCAG8 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr 1:218,856,571...219,107,855
Ensembl chr 1:224,239,009...224,481,132
JBrowse link
photoreceptor connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADGRV1 adhesion G protein-coupled receptor V1 ISO (MGI:3774983|PMID:17906286) MGI PMID:17906286 MGI:3774983 NCBI chr 5:24,208,844...24,811,284
Ensembl chr 5:24,341,808...24,945,477
JBrowse link
G ARL3 ADP ribosylation factor like GTPase 3 located_in ISO (PMID:12417528) UniProt PMID:12417528 NCBI chr10:99,271,620...99,312,784
Ensembl chr10:102,735,325...102,775,849
JBrowse link
G BBS4 Bardet-Biedl syndrome 4 ISO (MGI:5525015|PMID:23943788) MGI PMID:23943788 MGI:5525015 NCBI chr15:51,601,526...51,656,460
Ensembl chr15:70,362,261...70,416,964
JBrowse link
G CEP290 centrosomal protein 290 ISO (MGI:3624140|PMID:16632484), (MGI:3653539|PMID:16682973), (MGI:5525015|PMID:23943788) UniProt PMID:16632484 PMID:16682973 PMID:23943788 MGI:3624140 MGI:3653539 MGI:5525015 NCBI chr12:85,589,911...85,683,365
Ensembl chr12:88,896,146...88,988,044
JBrowse link
G CETN1 centrin 1 ISO (MGI:3525432|PMID:15347651), (MGI:6393223|PMID:30120214) MGI PMID:15347651 PMID:30120214 MGI:3525432 MGI:6393223 NCBI chr18:13,743,197...13,744,490
Ensembl chr18:17,386,201...17,386,719
JBrowse link
G CETN2 centrin 2 ISO (MGI:3525432|PMID:15347651) MGI PMID:15347651 MGI:3525432 NCBI chr  X:142,401,679...142,405,206
Ensembl chr  X:152,320,893...152,324,362
JBrowse link
G CETN3 centrin 3 ISO (MGI:3525432|PMID:15347651), (MGI:5303017|PMID:22031837), (MGI:5588761|PMID:24833722) MGI PMID:15347651 PMID:22031837 PMID:24833722 MGI:3525432 MGI:5303017 MGI:5588761 NCBI chr 5:24,965,172...24,981,259
Ensembl chr 5:25,098,973...25,114,676
JBrowse link
G CFAP410 cilia and flagella associated protein 410 ISO (MGI:5770162|PMID:26974433) UniProt PMID:26974433 MGI:5770162 NCBI chr21:30,585,802...30,595,981
Ensembl chr21:43,881,219...43,889,891
JBrowse link
G FAM161A FAM161 centrosomal protein A located_in ISO PMID:22940612
(PMID:22940612)
(MGI:5438885|PMID:22791751), (MGI:5442623|PMID:22940612), (MGI:5588761|PMID:24833722)
UniProt PMID:22791751 PMID:22940612 PMID:24833722 MGI:5438885 MGI:5442623 MGI:5588761 RGD:8553427 NCBI chr2A:61,907,508...61,936,530
Ensembl chr2A:63,041,759...63,070,172
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 ISO (MGI:3757777|PMID:17881533) MGI PMID:17881533 MGI:3757777 NCBI chr 3:50,119,267...50,126,131
Ensembl chr 3:51,354,472...51,360,568
JBrowse link
G IFT140 intraflagellar transport 140 ISO (MGI:4460838|PMID:20368623), (MGI:5604762|PMID:24619649) MGI PMID:20368623 PMID:24619649 MGI:4460838 MGI:5604762 NCBI chr16:130,150...232,369
Ensembl chr16:1,566,824...1,658,884
JBrowse link
G IFT20 intraflagellar transport 20 ISO (MGI:5317282|PMID:21307337) MGI PMID:21307337 MGI:5317282 NCBI chr17:28,438,960...28,446,113
Ensembl chr17:28,941,303...28,948,129
JBrowse link
G IFT52 intraflagellar transport 52 ISO (MGI:4460838|PMID:20368623) MGI PMID:20368623 MGI:4460838 NCBI chr20:39,929,523...39,986,072
Ensembl chr20:41,023,517...41,080,500
JBrowse link
G IFT57 intraflagellar transport 57 ISO (MGI:4460838|PMID:20368623) MGI PMID:20368623 MGI:4460838 NCBI chr 3:105,287,086...105,348,872
Ensembl chr 3:112,222,128...112,282,069
JBrowse link
G IFT88 intraflagellar transport 88 ISO (MGI:3839506|PMID:19208653), (MGI:4460838|PMID:20368623) MGI PMID:19208653 PMID:20368623 MGI:3839506 MGI:4460838 NCBI chr13:1,893,102...2,017,771
Ensembl chr13:20,206,471...20,331,204
JBrowse link
G IQCB1 IQ motif containing B1 located_in ISO (MGI:3763297|PMID:15723066)
(PMID:15723066)
HGNC-UCL PMID:15723066 MGI:3763297 NCBI chr 3:118,871,589...118,936,591
Ensembl chr 3:125,779,453...125,844,242
JBrowse link
G KIAA1549 KIAA1549 ortholog ISO (MGI:6393223|PMID:30120214) UniProt PMID:30120214 MGI:6393223 NCBI chr 7:130,790,115...130,940,250
Ensembl chr 7:143,283,947...143,427,404
JBrowse link
G KIF17 kinesin family member 17 ISO (MGI:4353477|PMID:19384852) MGI PMID:19384852 MGI:4353477 NCBI chr 1:19,611,573...19,666,698
Ensembl chr 1:20,658,870...20,711,288
JBrowse link
G KIF3A kinesin family member 3A ISO (MGI:3839506|PMID:19208653) UniProt PMID:19208653 MGI:3839506 NCBI chr 5:128,112,636...128,154,443
Ensembl chr 5:134,274,352...134,315,431
JBrowse link
G KIFAP3 kinesin associated protein 3 ISO (MGI:4353477|PMID:19384852) MGI PMID:19384852 MGI:4353477 NCBI chr 1:145,410,755...145,564,248
Ensembl chr 1:149,127,548...149,280,831
JBrowse link
G LCA5 lebercilin LCA5 located_in ISO PMID:17546029
(PMID:21606596)
(MGI:5050784|PMID:21606596)
UniProt PMID:17546029 PMID:21606596 MGI:5050784 RGD:14397561 NCBI chr 6:77,366,248...77,418,718
Ensembl chr 6:80,636,181...80,688,609
JBrowse link
G LOC100990238 intraflagellar transport protein 122 homolog ISO (MGI:3839506|PMID:19208653) UniProt PMID:19208653 MGI:3839506 NCBI chr 3:126,498,018...126,578,211
Ensembl chr 3:133,851,433...133,930,117
JBrowse link
G MAK male germ cell associated kinase ISO (MGI:5298333|PMID:21148103) MGI PMID:21148103 MGI:5298333 NCBI chr 6:10,604,723...10,679,712
Ensembl chr 6:10,882,745...10,956,579
JBrowse link
G MYO7A myosin VIIA ISO (MGI:1343017|PMID:10414956) MGI PMID:10414956 MGI:1343017 NCBI chr11:72,187,024...72,265,931
Ensembl chr11:75,834,185...75,907,752
JBrowse link
G NPHP1 nephrocystin 1 ISO (MGI:4821072|PMID:16885411) UniProt PMID:16885411 MGI:4821072 NCBI chr2A:91,520,612...91,602,187
Ensembl chr2A:111,625,267...111,706,205
JBrowse link
G NPHP4 nephrocystin 4 ISO (MGI:4867588|PMID:21078623) MGI PMID:21078623 MGI:4867588 NCBI chr 1:4,620,593...4,756,363
Ensembl chr 1:5,878,739...6,012,864
JBrowse link
G PCDHB15 protocadherin beta 15 ISO (MGI:3775581|PMID:18279309) MGI PMID:18279309 MGI:3775581 NCBI chr 5:136,605,233...136,611,147
Ensembl chr 5:142,721,472...142,723,835
JBrowse link
G PCDHB8 protocadherin beta 8 ISO (MGI:3775581|PMID:18279309) MGI PMID:18279309 MGI:3775581 NCBI chr 5:136,538,882...136,543,805
Ensembl chr 5:142,654,990...142,657,395
JBrowse link
G RP1 RP1 axonemal microtubule associated part_of ISO (MGI:2156902|PMID:11773008), (MGI:2676521|PMID:14507858)
(PMID:11767049)
UniProt
MGI
PMID:11767049 PMID:11773008 PMID:14507858 MGI:2156902 MGI:2676521 NCBI chr 8:50,979,412...51,311,431
Ensembl chr 8:48,419,033...48,583,879
JBrowse link
G RP1L1 RP1 like 1 ISO (MGI:4353917|PMID:19657028) UniProt PMID:19657028 MGI:4353917 NCBI chr 8:8,586,410...8,605,275 JBrowse link
G RPGR retinitis pigmentosa GTPase regulator ISO (MGI:1354839|PMID:10725384) MGI PMID:10725384 MGI:1354839 NCBI chr  X:30,718,669...30,777,671 JBrowse link
G RPGRIP1 RPGR interacting protein 1 ISO (MGI:5608598|PMID:25398945) UniProt PMID:25398945 MGI:5608598 NCBI chr14:2,105,703...2,169,362
Ensembl chr14:20,185,236...20,247,064
JBrowse link
G RPGRIP1L RPGRIP1 like ISO RGD PMID:17558407 RGD:11537356 NCBI chr16:33,836,361...33,939,265
Ensembl chr16:52,920,796...53,023,174
JBrowse link
G SEPTIN2 septin 2 located_in ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chr2B:128,586,659...128,624,991
Ensembl chr2B:247,380,771...247,419,556
JBrowse link
G SPATA7 spermatogenesis associated 7 ISO (MGI:5608598|PMID:25398945) UniProt PMID:25398945 MGI:5608598 NCBI chr14:69,002,723...69,056,185
Ensembl chr14:88,367,757...88,415,045
JBrowse link
G SPTBN5 spectrin beta, non-erythrocytic 5 part_of ISO (PMID:23704327) MGI PMID:23704327 NCBI chr15:20,789,568...20,839,907 JBrowse link
G TBCC tubulin folding cofactor C located_in ISO (PMID:12417528) UniProt PMID:12417528 NCBI chr 6:42,334,902...42,336,560
Ensembl chr 6:43,630,810...43,631,943
JBrowse link
G TMEM237 transmembrane protein 237 ISO (MGI:4830641|PMID:20375344) MGI PMID:20375344 MGI:4830641 NCBI chr2B:88,873,362...88,896,689
Ensembl chr2B:207,028,061...207,051,206
JBrowse link
G TOPORS TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase located_in ISO (MGI:4939557|PMID:21159800)
(PMID:21159800)
BHF-UCL PMID:21159800 MGI:4939557 NCBI chr 9:32,314,850...32,327,067
Ensembl chr 9:33,124,730...33,135,129
JBrowse link
G TTC8 tetratricopeptide repeat domain 8 ISO (MGI:2677624|PMID:14520415) BHF-UCL PMID:14520415 MGI:2677624 NCBI chr14:69,446,355...69,502,351
Ensembl chr14:88,802,812...88,857,055
JBrowse link
G USH1G USH1 protein network component sans ISO (MGI:3774983|PMID:17906286) MGI PMID:17906286 MGI:3774983 NCBI chr17:68,861,622...68,868,822
Ensembl chr17:74,419,769...74,424,794
JBrowse link
G USH2A usherin colocalizes_with ISO (MGI:3774983|PMID:17906286), (MGI:4950337|PMID:21212183) RGD
MGI
PMID:16434480 PMID:17906286 PMID:21212183 MGI:3774983 MGI:4950337 RGD:1600128 NCBI chr 1:191,193,130...191,994,664
Ensembl chr 1:196,048,086...196,850,216
JBrowse link
G WDR19 WD repeat domain 19 ISO (MGI:3839506|PMID:19208653) UniProt PMID:19208653 MGI:3839506 NCBI chr 4:33,511,283...33,616,946
Ensembl chr 4:39,365,276...39,462,903
JBrowse link
G WHRN whirlin colocalizes_with ISO (MGI:3774983|PMID:17906286), (MGI:4950337|PMID:21212183) RGD
MGI
PMID:16434480 PMID:17906286 PMID:21212183 MGI:3774983 MGI:4950337 RGD:1600128 NCBI chr 9:85,500,222...85,604,417
Ensembl chr 9:113,863,872...113,966,758
JBrowse link
photoreceptor disc membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PCDHB8 protocadherin beta 8 ISO (MGI:3775581|PMID:18279309) MGI PMID:18279309 MGI:3775581 NCBI chr 5:136,538,882...136,543,805
Ensembl chr 5:142,654,990...142,657,395
JBrowse link
G RHO rhodopsin located_in ISO (PMID:25664179) UniProt PMID:25664179 NCBI chr 3:126,586,510...126,593,028
Ensembl chr 3:133,938,419...133,944,928
JBrowse link
G SPTBN5 spectrin beta, non-erythrocytic 5 part_of ISO (PMID:23704327) MGI PMID:23704327 NCBI chr15:20,789,568...20,839,907 JBrowse link
photoreceptor distal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr 6:133,055,026...133,273,591
Ensembl chr 6:137,156,237...137,361,232
JBrowse link
G CEP290 centrosomal protein 290 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr12:85,589,911...85,683,365
Ensembl chr12:88,896,146...88,988,044
JBrowse link
G NPHP1 nephrocystin 1 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr2A:91,520,612...91,602,187
Ensembl chr2A:111,625,267...111,706,205
JBrowse link
G NPHP4 nephrocystin 4 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr 1:4,620,593...4,756,363
Ensembl chr 1:5,878,739...6,012,864
JBrowse link
G RPGR retinitis pigmentosa GTPase regulator ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr  X:30,718,669...30,777,671 JBrowse link
G RPGRIP1 RPGR interacting protein 1 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr14:2,105,703...2,169,362
Ensembl chr14:20,185,236...20,247,064
JBrowse link
G SPATA7 spermatogenesis associated 7 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr14:69,002,723...69,056,185
Ensembl chr14:88,367,757...88,415,045
JBrowse link
photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCA4 ATP binding cassette subfamily A member 4 ISO (MGI:5525015|PMID:23943788) MGI PMID:23943788 MGI:5525015 NCBI chr 1:96,659,703...96,784,876
Ensembl chr 1:95,386,266...95,514,589
JBrowse link
G AHI1 Abelson helper integration site 1 ISO (MGI:4461813|PMID:20592197) MGI PMID:20592197 MGI:4461813 NCBI chr 6:133,055,026...133,273,591
Ensembl chr 6:137,156,237...137,361,232
JBrowse link
G ARR3 arrestin 3 ISO (MGI:1354839|PMID:10725384), (MGI:3616100|PMID:12486395) MGI PMID:10725384 PMID:12486395 MGI:1354839 MGI:3616100 NCBI chr  X:59,536,796...59,550,274
Ensembl chr  X:69,596,163...69,609,624
JBrowse link
G BBS4 Bardet-Biedl syndrome 4 ISO (MGI:5525015|PMID:23943788) MGI PMID:23943788 MGI:5525015 NCBI chr15:51,601,526...51,656,460
Ensembl chr15:70,362,261...70,416,964
JBrowse link
G BBS7 Bardet-Biedl syndrome 7 ISO (MGI:5525015|PMID:23943788) MGI PMID:23943788 MGI:5525015 NCBI chr 4:114,024,949...114,072,000
Ensembl chr 4:125,161,804...125,208,350
JBrowse link
G CACNA1F calcium voltage-gated channel subunit alpha1 F ISO RGD PMID:11526344 RGD:632484 NCBI chr  X:41,504,804...41,533,501
Ensembl chr  X:49,356,994...49,385,678
JBrowse link
G CEP250 centrosomal protein 250 ISO (MGI:6254746|PMID:28005958) UniProt PMID:28005958 MGI:6254746 NCBI chr20:31,782,894...31,847,152
Ensembl chr20:32,903,536...32,959,714
JBrowse link
G CEP290 centrosomal protein 290 ISO (MGI:5525015|PMID:23943788) MGI PMID:23943788 MGI:5525015 NCBI chr12:85,589,911...85,683,365
Ensembl chr12:88,896,146...88,988,044
JBrowse link
G CERKL ceramide kinase like ISO (MGI:5571037|PMID:23142158) MGI PMID:23142158 MGI:5571037 NCBI chr2B:68,800,462...68,921,793 JBrowse link
G CFAP410 cilia and flagella associated protein 410 located_in ISO (PMID:27548899) UniProt PMID:27548899 NCBI chr21:30,585,802...30,595,981
Ensembl chr21:43,881,219...43,889,891
JBrowse link
G CIB2 calcium and integrin binding family member 2 ISO (MGI:5487486|PMID:23023331) UniProt PMID:23023331 MGI:5487486 NCBI chr15:57,033,782...57,060,650
Ensembl chr15:75,998,797...76,025,485
JBrowse link
G CNGA1 cyclic nucleotide gated channel subunit alpha 1 ISO (MGI:1354839|PMID:10725384), (MGI:3527312|PMID:15634774), (MGI:4461813|PMID:20592197) MGI PMID:10725384 PMID:15634774 PMID:20592197 MGI:1354839 MGI:3527312 MGI:4461813 NCBI chr 4:74,196,877...74,213,563
Ensembl chr 4:84,910,653...84,945,248
JBrowse link
G CNGA3 cyclic nucleotide gated channel subunit alpha 3 ISO (MGI:1355614|PMID:10813773), (MGI:3527312|PMID:15634774) MGI PMID:10813773 PMID:15634774 MGI:1355614 MGI:3527312 NCBI chr2A:100,911,053...100,962,278
Ensembl chr2A:99,259,808...99,308,517
JBrowse link
G CNGB1 cyclic nucleotide gated channel subunit beta 1 ISO (MGI:5587954|PMID:22183407) MGI PMID:22183407 MGI:5587954 NCBI chr16:38,160,056...38,249,474
Ensembl chr16:57,292,093...57,375,460
JBrowse link
G CNGB3 cyclic nucleotide gated channel subunit beta 3 ISO (MGI:3527312|PMID:15634774) MGI PMID:15634774 MGI:3527312 NCBI chr 8:83,269,589...83,439,999
Ensembl chr 8:85,238,043...85,407,059
JBrowse link
G GNAT1 G protein subunit alpha transducin 1 located_in ISO (PMID:2534964)
(MGI:3778702|PMID:18367617), (MGI:4461813|PMID:20592197), (MGI:6383261|PMID:31696965)
RGD
UniProt
MGI
PMID:2534964 PMID:10396627 PMID:11931744 PMID:18367617 PMID:20592197 PMID:31696965 MGI:3778702 MGI:4461813 MGI:6383261 RGD:1599009 RGD:6893629 NCBI chr 3:50,119,267...50,126,131
Ensembl chr 3:51,354,472...51,360,568
JBrowse link
G GNAT2 G protein subunit alpha transducin 2 located_in ISO (PMID:2534964) RGD
UniProt
PMID:2534964 PMID:17591908 RGD:2302146 NCBI chr 1:111,980,855...111,990,686
Ensembl chr 1:111,208,510...111,225,808
JBrowse link
G GNB1 G protein subunit beta 1 ISO (MGI:3778702|PMID:18367617) MGI PMID:18367617 MGI:3778702 NCBI chr 1:490,415...596,826
Ensembl chr 1:1,647,340...1,701,614
JBrowse link
G GNB5 G protein subunit beta 5 ISO (MGI:5507748|PMID:23555598) MGI PMID:23555598 MGI:5507748 NCBI chr15:31,061,310...31,122,427
Ensembl chr15:49,388,026...49,452,123
JBrowse link
G GNGT1 G protein subunit gamma transducin 1 ISO RGD PMID:10396627 PMID:11931744 RGD:1599009 RGD:6893629 NCBI chr 7:85,839,639...85,859,844
Ensembl chr 7:99,446,623...99,451,185
JBrowse link
G GRK1 G protein-coupled receptor kinase 1 ISO (MGI:5587954|PMID:22183407) MGI PMID:22183407 MGI:5587954 NCBI chr13:94,816,045...94,838,509
Ensembl chr13:113,867,002...113,885,610
JBrowse link
G GUCA1A guanylate cyclase activator 1A ISO (MGI:5587954|PMID:22183407) RGD
MGI
PMID:9620085 PMID:22183407 MGI:5587954 RGD:1599354 NCBI chr 6:41,693,593...41,774,591
Ensembl chr 6:43,045,307...43,070,520
JBrowse link
G GUCA1B guanylate cyclase activator 1B ISO RGD PMID:9620085 RGD:1599354 NCBI chr 6:41,771,537...41,783,364
Ensembl chr 6:43,072,469...43,083,838
JBrowse link
G GUCA2B guanylate cyclase activator 2B ISO (MGI:5587954|PMID:22183407) MGI PMID:22183407 MGI:5587954 NCBI chr 1:41,452,722...41,455,192
Ensembl chr 1:42,832,196...42,835,425
JBrowse link
G GUCY2D guanylate cyclase 2D, retinal located_in ISO (PMID:7912093) UniProt PMID:7912093 NCBI chr17:8,037,301...8,051,478
Ensembl chr17:8,023,519...8,036,065
JBrowse link
G HNF1A HNF1 homeobox A ISO (MGI:1334099|PMID:10090727) MGI PMID:10090727 MGI:1334099 NCBI chr12:118,562,308...118,584,596
Ensembl chr12:121,932,671...121,955,911
JBrowse link
G IFT140 intraflagellar transport 140 ISO (MGI:5604762|PMID:24619649) MGI PMID:24619649 MGI:5604762 NCBI chr16:130,150...232,369
Ensembl chr16:1,566,824...1,658,884
JBrowse link
G IFT20 intraflagellar transport 20 ISO (MGI:5317282|PMID:21307337) MGI PMID:21307337 MGI:5317282 NCBI chr17:28,438,960...28,446,113
Ensembl chr17:28,941,303...28,948,129
JBrowse link
G INHA inhibin subunit alpha ISO RGD PMID:7596220 RGD:2290440 NCBI chr2B:106,828,948...106,832,993
Ensembl chr2B:225,419,176...225,423,386
JBrowse link
G IQCB1 IQ motif containing B1 ISO (MGI:3763297|PMID:15723066) HGNC-UCL PMID:15723066 MGI:3763297 NCBI chr 3:118,871,589...118,936,591
Ensembl chr 3:125,779,453...125,844,242
JBrowse link
G LYAR Ly1 antibody reactive ISO (MGI:6107438|PMID:25735755) UniProt PMID:25735755 MGI:6107438 Ensembl chr 4:4,348,263...4,364,347 JBrowse link
G MAK male germ cell associated kinase ISO (MGI:5298333|PMID:21148103) MGI PMID:21148103 MGI:5298333 NCBI chr 6:10,604,723...10,679,712
Ensembl chr 6:10,882,745...10,956,579
JBrowse link
G MAP1A microtubule associated protein 1A ISO (MGI:5587952|PMID:24664738) MGI PMID:24664738 MGI:5587952 NCBI chr15:22,472,641...22,493,293
Ensembl chr15:40,627,099...40,647,752
JBrowse link
G MAP1B microtubule associated protein 1B ISO (MGI:5587952|PMID:24664738) MGI PMID:24664738 MGI:5587952 NCBI chr 5:43,102,739...43,204,978
Ensembl chr 5:43,701,530...43,803,393
JBrowse link
G MERTK MER proto-oncogene, tyrosine kinase ISO RGD PMID:11861639 RGD:1299193 NCBI chr2A:89,977,226...90,109,970
Ensembl chr2A:113,056,852...113,162,052
JBrowse link
G MYO3B myosin IIIB ISO (MGI:4352610|PMID:19332056) MGI PMID:19332056 MGI:4352610 NCBI chr2B:57,458,046...57,940,039
Ensembl chr2B:174,975,796...175,398,203
JBrowse link
G MYO5A myosin VA ISO (MGI:3047015|PMID:14978221) MGI PMID:14978221 MGI:3047015 NCBI chr15:31,246,192...31,470,040
Ensembl chr15:49,578,491...49,704,319
JBrowse link
G MYO7A myosin VIIA NOT
NOT|located_in
ISO PMID:8842737
(PMID:8842737)
(MGI:81971|PMID:8842737)
UniProt PMID:8842737 MGI:81971 RGD:8553559 NCBI chr11:72,187,024...72,265,931
Ensembl chr11:75,834,185...75,907,752
JBrowse link
G MYRIP myosin VIIA and Rab interacting protein ISO (MGI:2180422|PMID:11964381) UniProt PMID:11964381 MGI:2180422 NCBI chr 3:39,715,890...40,163,826
Ensembl chr 3:40,079,777...40,433,613
JBrowse link
G NUP42 nucleoporin 42 ISO (MGI:5587954|PMID:22183407) MGI PMID:22183407 MGI:5587954 NCBI chr 7:23,864,937...23,884,596
Ensembl chr 7:23,473,868...23,493,316
JBrowse link
G OCRL OCRL inositol polyphosphate-5-phosphatase located_in ISO (PMID:22543976) UniProt PMID:22543976 NCBI chr  X:118,670,612...118,721,108
Ensembl chr  X:128,968,760...129,018,157
JBrowse link
G OPN1SW opsin 1, short wave sensitive ISO (MGI:1354839|PMID:10725384), (MGI:1355614|PMID:10813773), (MGI:2654998|PMID:12651948), (MGI:4352610|PMID:19332056), (MGI:5488667|PMID:23351594), (MGI:5494796|PMID:23386608), (MGI:5587954|PMID:22183407), (MGI:6305433|PMID:26420485) RGD
MGI
PMID:10725384 PMID:10813773 PMID:12651948 PMID:19332056 PMID:20209167 PMID:22183407 PMID:23351594 PMID:23386608 PMID:26420485 MGI:1354839 MGI:1355614 MGI:2654998 MGI:4352610 MGI:5488667 MGI:5494796 MGI:5587954 MGI:6305433 RGD:6893562 NCBI chr 7:120,724,363...120,727,649
Ensembl chr 7:133,246,131...133,251,464
JBrowse link
G PCARE photoreceptor cilium actin regulator ISO (MGI:5636574|PMID:25616964) MGI PMID:25616964 MGI:5636574 NCBI chr2A:29,069,651...29,082,796
Ensembl chr2A:29,147,730...29,160,296
JBrowse link
G PCDH15 protocadherin related 15 located_in ISO (MGI:3722521|PMID:14570705)
(PMID:14570705)
MGI
HGNC-UCL
PMID:14570705 MGI:3722521 NCBI chr10:50,452,290...52,236,538
Ensembl chr10:52,666,969...53,536,611
JBrowse link
G PDC phosducin ISO (MGI:3778702|PMID:18367617) MGI PMID:18367617 MGI:3778702 NCBI chr 1:161,969,161...161,976,816
Ensembl chr 1:166,122,181...166,145,947
JBrowse link
G PRCD photoreceptor disc component ISO (MGI:5819338|PMID:23672200) HGNC PMID:23672200 MGI:5819338 NCBI chr17:70,486,096...70,501,945
Ensembl chr17:76,179,664...76,193,493
JBrowse link
G PRKCA protein kinase C alpha ISO (MGI:1355614|PMID:10813773) MGI PMID:10813773 MGI:1355614 NCBI chr17:60,246,485...60,747,158
Ensembl chr17:65,454,907...65,947,903
JBrowse link
G PROM1 prominin 1 ISO (MGI:3838023|PMID:19228982) UniProt PMID:19228982 MGI:3838023 NCBI chr 4:10,405,299...10,519,518
Ensembl chr 4:15,702,159...15,815,454
JBrowse link
G PRPH peripherin ISO (MGI:5587954|PMID:22183407) MGI PMID:22183407 MGI:5587954 NCBI chr12:39,451,832...39,456,800
Ensembl chr12:40,337,626...40,342,611
JBrowse link
G PRPH2 peripherin 2 ISO (MGI:5587954|PMID:22183407), (MGI:5905515|PMID:28053051), (MGI:6305433|PMID:26420485) MGI PMID:22183407 PMID:26420485 PMID:28053051 MGI:5587954 MGI:5905515 MGI:6305433 NCBI chr 6:42,284,818...42,316,150
Ensembl chr 6:43,582,317...43,608,011
JBrowse link
G PTGS1 prostaglandin-endoperoxide synthase 1 ISO (MGI:2429331|PMID:12355421) MGI PMID:12355421 MGI:2429331 NCBI chr 9:93,495,365...93,517,557
Ensembl chr 9:121,837,095...121,859,283
JBrowse link
G PTPRK protein tyrosine phosphatase receptor type K ISO (MGI:3794228|PMID:18308476) MGI PMID:18308476 MGI:3794228 NCBI chr 6:125,753,656...126,312,124
Ensembl chr 6:129,864,573...130,421,644
JBrowse link
G RAB27A RAB27A, member RAS oncogene family ISO (MGI:2180422|PMID:11964381) UniProt PMID:11964381 MGI:2180422 NCBI chr15:34,174,491...34,263,045
Ensembl chr15:52,498,202...52,529,984
JBrowse link
G RAPGEF4 Rap guanine nucleotide exchange factor 4 ISO RGD PMID:19883736 RGD:2314691 NCBI chr2B:60,022,738...60,339,981
Ensembl chr2B:177,655,733...177,793,644
JBrowse link
G RD3 RD3 regulator of GUCY2D ISO (MGI:6368063|PMID:29515371) UniProt PMID:29515371 MGI:6368063 NCBI chr 1:187,044,054...187,060,441
Ensembl chr 1:191,907,989...191,924,365
JBrowse link
G RGS9 regulator of G protein signaling 9 ISO (MGI:5507748|PMID:23555598) MGI PMID:23555598 MGI:5507748 NCBI chr17:59,085,707...59,176,368
Ensembl chr17:64,262,585...64,389,559
JBrowse link
G RGS9BP regulator of G protein signaling 9 binding protein ISO (MGI:5507748|PMID:23555598) MGI PMID:23555598 MGI:5507748 NCBI chr19:29,595,159...29,597,612
Ensembl chr19:38,343,663...38,344,370
JBrowse link
G RHO rhodopsin part_of ISO (PMID:11767049), (PMID:23704327)
(MGI:1354839|PMID:10725384), (MGI:2654998|PMID:12651948), (MGI:4352610|PMID:19332056), (MGI:4461813|PMID:20592197), (MGI:4949555|PMID:21444805), (MGI:4950337|PMID:21212183), (MGI:5462139|PMID:22869374), (MGI:5467890|PMID:23178122), (MGI:5488667|PMID:23351594), (MGI:5525015|PMID:23943788), (MGI:5587954|PMID:22183407), (MGI:5607451|PMID:25224828), (MGI:6305433|PMID:26420485)
RGD
MGI
PMID:8814134 PMID:10725384 PMID:11767049 PMID:12651948 PMID:19332056 PMID:20592197 PMID:21212183 PMID:21444805 PMID:22183407 PMID:22869374 PMID:23178122 PMID:23351594 PMID:23704327 PMID:23943788 PMID:25224828 PMID:26420485 MGI:1354839 MGI:2654998 MGI:4352610 MGI:4461813 MGI:4949555 MGI:4950337 MGI:5462139 MGI:5467890 MGI:5488667 MGI:5525015 MGI:5587954 MGI:5607451 MGI:6305433 RGD:6893595 NCBI chr 3:126,586,510...126,593,028
Ensembl chr 3:133,938,419...133,944,928
JBrowse link
G ROM1 retinal outer segment membrane protein 1 ISO (MGI:4461813|PMID:20592197), (MGI:5587954|PMID:22183407), (MGI:6305433|PMID:26420485) MGI PMID:20592197 PMID:22183407 PMID:26420485 MGI:4461813 MGI:5587954 MGI:6305433 NCBI chr11:57,970,290...57,972,658
Ensembl chr11:61,324,900...61,327,278
JBrowse link
G RP1 RP1 axonemal microtubule associated ISO (MGI:2676521|PMID:14507858), (MGI:3629826|PMID:15269252) UniProt PMID:14507858 PMID:15269252 MGI:2676521 MGI:3629826 NCBI chr 8:50,979,412...51,311,431
Ensembl chr 8:48,419,033...48,583,879
JBrowse link
G RP1L1 RP1 like 1 ISO (MGI:4353917|PMID:19657028) UniProt PMID:19657028 MGI:4353917 NCBI chr 8:8,586,410...8,605,275 JBrowse link
G RPGR retinitis pigmentosa GTPase regulator located_in ISO (PMID:12140192) UniProt PMID:12140192 NCBI chr  X:30,718,669...30,777,671 JBrowse link
G SAG S-antigen visual arrestin located_in ISO (PMID:3720866)
(MGI:5462139|PMID:22869374)
RGD
UniProt
MGI
PMID:3720866 PMID:10396627 PMID:22869374 MGI:5462139 RGD:6893629 NCBI chr2B:120,532,049...120,574,914
Ensembl chr2B:239,449,910...239,487,537
JBrowse link
G SHANK2 SH3 and multiple ankyrin repeat domains 2 ISO (MGI:5306573|PMID:19299912) CACAO PMID:19299912 MGI:5306573 NCBI chr11:65,570,677...66,268,139
Ensembl chr11:68,860,606...69,437,925
JBrowse link
G TULP1 TUB like protein 1 ISO (MGI:4397555|PMID:19218615) UniProt PMID:19218615 MGI:4397555 NCBI chr 6:35,058,422...35,073,472
Ensembl chr 6:36,151,747...36,166,160
JBrowse link
G USH1C USH1 protein network component harmonin ISO (MGI:2679149|PMID:14578428), (MGI:3774983|PMID:17906286) RGD
MGI
PMID:14578428 PMID:17906286 MGI:2679149 MGI:3774983 RGD:1303964 NCBI chr11:17,548,501...17,598,923
Ensembl chr11:17,233,854...17,284,256
JBrowse link
photoreceptor outer segment membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDHR1 cadherin related family member 1 ISO (MGI:3814988|PMID:18654668) BHF-UCL PMID:18654668 MGI:3814988 NCBI chr10:80,610,079...80,632,084
Ensembl chr10:84,179,704...84,204,747
JBrowse link
G CNGA1 cyclic nucleotide gated channel subunit alpha 1 ISO (MGI:3814988|PMID:18654668) BHF-UCL PMID:18654668 MGI:3814988 NCBI chr 4:74,196,877...74,213,563
Ensembl chr 4:84,910,653...84,945,248
JBrowse link
G GNB1 G protein subunit beta 1 ISO RGD PMID:11931744 RGD:1599009 NCBI chr 1:490,415...596,826
Ensembl chr 1:1,647,340...1,701,614
JBrowse link
G GUCY2D guanylate cyclase 2D, retinal located_in ISO PMID:9153227
(MGI:5049799|PMID:21598940)
UniProt PMID:9153227 PMID:21598940 MGI:5049799 RGD:1599625 NCBI chr17:8,037,301...8,051,478
Ensembl chr17:8,023,519...8,036,065
JBrowse link
G PHLPP2 PH domain and leucine rich repeat protein phosphatase 2 ISO RGD PMID:20089132 RGD:5131540 NCBI chr16:53,287,549...53,366,113
Ensembl chr16:71,481,605...71,562,793
JBrowse link
G PRCD photoreceptor disc component located_in ISO (MGI:5812604|PMID:27613864), (MGI:6271388|PMID:27509380)
(PMID:27613864)
UniProt PMID:27509380 PMID:27613864 MGI:5812604 MGI:6271388 NCBI chr17:70,486,096...70,501,945
Ensembl chr17:76,179,664...76,193,493
JBrowse link
G PROM1 prominin 1 located_in ISO (PMID:18654668) BHF-UCL PMID:18654668 NCBI chr 4:10,405,299...10,519,518
Ensembl chr 4:15,702,159...15,815,454
JBrowse link
G PRPH peripherin ISO (MGI:1343017|PMID:10414956) MGI PMID:10414956 MGI:1343017 NCBI chr12:39,451,832...39,456,800
Ensembl chr12:40,337,626...40,342,611
JBrowse link
G RDH11 retinol dehydrogenase 11 NOT ISO (MGI:3584215|PMID:15790565) MGI PMID:15790565 MGI:3584215 NCBI chr14:48,256,951...48,275,831
Ensembl chr14:67,135,366...67,154,286
JBrowse link
G RHO rhodopsin located_in ISO (PMID:19934218) RGD
UniProt
PMID:2209754 PMID:19934218 RGD:6893561 NCBI chr 3:126,586,510...126,593,028
Ensembl chr 3:133,938,419...133,944,928
JBrowse link
G ROM1 retinal outer segment membrane protein 1 ISO (MGI:3814988|PMID:18654668) BHF-UCL PMID:18654668 MGI:3814988 NCBI chr11:57,970,290...57,972,658
Ensembl chr11:61,324,900...61,327,278
JBrowse link
photoreceptor proximal connecting cilium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CEP290 centrosomal protein 290 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr12:85,589,911...85,683,365
Ensembl chr12:88,896,146...88,988,044
JBrowse link
rod photoreceptor outer segment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP1A4 ATPase Na+/K+ transporting subunit alpha 4 located_in ISO (PMID:26373354) ARUK-UCL PMID:26373354 NCBI chr 1:135,504,929...135,540,651
Ensembl chr 1:139,426,556...139,462,393
JBrowse link
G CEP290 centrosomal protein 290 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr12:85,589,911...85,683,365
Ensembl chr12:88,896,146...88,988,044
JBrowse link
G GUCY2F guanylate cyclase 2F, retinal ISO (MGI:4867355|PMID:21078983) UniProt PMID:21078983 MGI:4867355 NCBI chr  X:98,481,609...98,590,680
Ensembl chr  X:108,952,200...109,061,441
JBrowse link
G RD3 RD3 regulator of GUCY2D ISO (MGI:4867355|PMID:21078983) UniProt PMID:21078983 MGI:4867355 NCBI chr 1:187,044,054...187,060,441
Ensembl chr 1:191,907,989...191,924,365
JBrowse link
G SPATA7 spermatogenesis associated 7 ISO (MGI:6194004|PMID:29899041) MGI PMID:29899041 MGI:6194004 NCBI chr14:69,002,723...69,056,185
Ensembl chr14:88,367,757...88,415,045
JBrowse link
G TMEM237 transmembrane protein 237 ISO (MGI:4830641|PMID:20375344) MGI PMID:20375344 MGI:4830641 NCBI chr2B:88,873,362...88,896,689
Ensembl chr2B:207,028,061...207,051,206
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 12758
    cellular anatomical entity 12601
      organelle 9867
        cilium 596
          non-motile cilium 152
            9+0 non-motile cilium 118
              photoreceptor cell cilium + 105
Path 2
Term Annotations click to browse term
  cellular_component 12758
    cellular anatomical entity 12601
      cell projection 2096
        plasma membrane bounded cell projection 2068
          cilium 596
            non-motile cilium 152
              9+0 non-motile cilium 118
                photoreceptor cell cilium + 105
paths to the root