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ONTOLOGY REPORT - ANNOTATIONS

Term:glutamate receptor clustering
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Accession:GO:0097688 term browser browse the term
Definition:The neurotransmitter-gated ion channel clustering process in which glutamate receptors are localized to distinct domains in the cell membrane.
Synonyms:exact_synonym: glutamatergic receptor clustering


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AMPA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apoe apolipoprotein E acts_upstream_of_or_within_positive_effect
involved_in		 ISO
IEA		 (PMID:24328732)
GO_REF:0000107		 RGD
Ensembl		 PMID:24328732 GO_REF:0000107 NCBI chr 1:88,481,889...88,485,816
Ensembl chr 1:79,353,916...79,357,932 		JBrowse link
G Chrdl1 chordin-like 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:6315865 (PMID:30344043)		 Ensembl
RGD		 PMID:30344043 GO_REF:0000107 NCBI chr  X:111,685,864...111,789,684
Ensembl chr  X:106,889,125...106,992,921 		JBrowse link
G Dlg4 discs large MAGUK scaffold protein 4 involved_in IMP
IBA		 PMID:21525273
GO_REF:0000033		 GO_Central PMID:21525273 GO_REF:0000033, RGD:8554095 NCBI chr10:55,239,397...55,267,780
Ensembl chr10:54,739,470...54,767,153 		JBrowse link
G Lrrtm4 leucine rich repeat transmembrane neuronal 4 acts_upstream_of_or_within ISO MGI:5521326 (PMID:23911104) RGD PMID:23911104 NCBI chr 4:112,545,874...113,338,713
Ensembl chr 4:112,545,917...113,335,865 		JBrowse link
G Nlgn1 neuroligin 1 involved_in ISS
ISO
IEA
IMP		 GO_REF:0000024
(PMID:12796785), (PMID:21940442)
GO_REF:0000107		 BHF-UCL
RGD
Ensembl		 PMID:12796785 PMID:21940442 PMID:21940442 GO_REF:0000024 GO_REF:0000107, RGD:8553843 NCBI chr 2:110,184,987...111,110,316
Ensembl chr 2:108,257,824...109,002,464 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in IEA
ISO
ISS		 GO_REF:0000107
(PMID:21558424), (PMID:21795692)
GO_REF:0000024		 Ensembl
RGD
BHF-UCL		 PMID:21558424 PMID:21795692 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:120,568,707...120,630,796
Ensembl chr 7:120,570,402...120,630,374 		JBrowse link
positive regulation of AMPA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlg4 discs large MAGUK scaffold protein 4 involved_in IMP PMID:19596852 UniProt PMID:19596852 RGD:21201259 NCBI chr10:55,239,397...55,267,780
Ensembl chr10:54,739,470...54,767,153 		JBrowse link
G Grip2 glutamate receptor interacting protein 2 involved_in IMP PMID:20083202 UniProt PMID:20083202 RGD:4107359 NCBI chr 4:124,271,456...124,356,538
Ensembl chr 4:124,271,456...124,321,268 		JBrowse link
G Snx27 sorting nexin 27 IMP RGD PMID:25071192 RGD:13508620 NCBI chr 2:184,824,930...184,907,931
Ensembl chr 2:182,135,905...182,218,906 		JBrowse link
G Ssh1 slingshot protein phosphatase 1 IMP RGD PMID:20442266 RGD:11535133 NCBI chr12:48,281,756...48,343,812
Ensembl chr12:42,621,135...42,683,274 		JBrowse link
G Zdhhc2 zinc finger DHHC-type palmitoyltransferase 2 involved_in IMP PMID:19596852 UniProt PMID:19596852 RGD:21201259 NCBI chr16:58,511,931...58,581,530
Ensembl chr16:51,808,468...51,878,060 		JBrowse link
regulation of AMPA glutamate receptor clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frrs1l ferric-chelate reductase 1-like acts_upstream_of_or_within ISO (PMID:29276473) RGD PMID:29276473 NCBI chr 5:76,451,101...76,485,319
Ensembl chr 5:71,659,284...71,690,108 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:5056336 (PMID:21558424)		 Ensembl
RGD		 PMID:21558424 GO_REF:0000107 NCBI chr 7:120,568,707...120,630,796
Ensembl chr 7:120,570,402...120,630,374 		JBrowse link
G Shisa6 shisa family member 6 involved_in ISO (PMID:26931375) RGD PMID:26931375 NCBI chr10:50,897,740...51,192,111
Ensembl chr10:50,903,333...51,192,063 		JBrowse link
G Shisa7 shisa family member 7 NOT|involved_in ISO (PMID:31601770)
(PMID:29199957)		 RGD PMID:29199957 PMID:31601770 NCBI chr 1:78,022,680...78,041,748
Ensembl chr 1:68,994,025...69,012,943 		JBrowse link
G Slc7a11 solute carrier family 7 member 11 acts_upstream_of_or_within ISO MGI:3608695 (PMID:25429150) RGD PMID:25429150 NCBI chr 2:136,532,912...136,668,560
Ensembl chr 2:133,963,107...134,517,536 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    localization 5703
      cellular localization 3677
        localization within membrane 763
          protein localization to membrane 668
            receptor clustering 82
              neurotransmitter-gated ion channel clustering 22
                glutamate receptor clustering 14
                  AMPA glutamate receptor clustering + 14
                  regulation of glutamate receptor clustering + 10
Path 2
Term Annotations click to browse term
  biological_process 20536
    localization 5703
      macromolecule localization 3183
        cellular macromolecule localization 2715
          protein localization 2703
            protein localization to membrane 668
              receptor clustering 82
                neurotransmitter-gated ion channel clustering 22
                  glutamate receptor clustering 14
                    AMPA glutamate receptor clustering + 14
                    regulation of glutamate receptor clustering + 10
paths to the root