Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:ciliary base
go back to main search page
Accession:GO:0097546 term browser browse the term
Definition:Area of the cilium (also called flagellum) where the basal body and the axoneme are anchored to the plasma membrane. The ciliary base encompasses the distal part of the basal body, transition fibers and transition zone and is structurally and functionally very distinct from the rest of the cilium. In this area proteins are sorted and filtered before entering the cilium, and many ciliary proteins localize specifically to this area.
Comment:Due to resolution issues, researchers are often unable to assign protein localization to more specific ciliary compartments such as the basal body, transition fibers or transition zone, and instead refer to 'ciliary base'. The terms GO:0036064 'ciliary basal body', GO:0097539 'ciliary transition fiber' and GO:0035869 'ciliary transition zone' represent strictly defined compartments at the ciliary base and should be used for annotation whenever possible. Also, note that cilia and eukaryotic flagella are deemed to be equivalent.
Synonyms:exact_synonym: cilial base;   cilium base;   flagellar base;   flagellum base


show annotations for term's descendants           Sort by:
 
ciliary base term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep126 centrosomal protein 126 ISO
IBA
(PMID:24867236)
PMID:21873635
RGD PMID:24867236, PMID:21873635 RGD:13792537 NCBI chr 8:6,237,838...6,305,127
Ensembl chr 8:6,255,850...6,305,033
JBrowse link
G Cfap36 cilia and flagella associated protein 36 IBA
ISO
PMID:21873635
(MGI:5925653|PMID:26455799)
RGD PMID:26455799, PMID:21873635 MGI:5925653, RGD:13792537 NCBI chr14:113,618,954...113,644,874
Ensembl chr14:113,618,964...113,644,779
JBrowse link
G Cibar1 CBY1 interacting BAR domain containing 1 ISO (PMID:27528616) RGD PMID:27528616 NCBI chr 5:25,732,457...25,750,953
Ensembl chr 5:25,732,644...25,750,826
JBrowse link
G Cilk1 ciliogenesis associated kinase 1 IEA
ISO
ISS
GO_REF:0000107
(MGI:5787768|PMID:25243405)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:25243405 GO_REF:0000024, GO_REF:0000107, MGI:5787768 NCBI chr 8:85,413,998...85,473,374
Ensembl chr 8:85,413,537...85,472,694
JBrowse link
G Cluap1 clusterin associated protein 1 ISO (MGI:5509110|PMID:23742838) RGD PMID:23742838 MGI:5509110 NCBI chr10:11,847,058...11,878,792
Ensembl chr10:11,847,102...11,878,792
JBrowse link
G Disc1 DISC1 scaffold protein ISO (PMID:20531939) RGD PMID:20531939 NCBI chr19:57,818,838...58,069,992
Ensembl chr19:57,820,260...58,066,152
JBrowse link
G Dnali1 dynein, axonemal, light intermediate chain 1 ISO (MGI:6111002|PMID:29317443) RGD PMID:29317443 MGI:6111002 NCBI chr 5:143,053,365...143,062,203
Ensembl chr 5:143,053,367...143,062,226
JBrowse link
G Dync2i1 dynein 2 intermediate chain 1 colocalizes_with ISO (PMID:23910462)
(PMID:25830415)
RGD PMID:23910462, PMID:25830415 NCBI chr 6:144,069,077...144,124,975
Ensembl chr 6:144,069,022...144,123,729
JBrowse link
G Dynlt2b dynein light chain Tctex-type 2B colocalizes_with ISO (PMID:25830415) RGD PMID:25830415 NCBI chr11:71,593,302...71,601,662
Ensembl chr11:71,593,302...71,601,662
JBrowse link
G Enkd1 enkurin domain containing 1 ISO (MGI:6110984|PMID:29257953) RGD PMID:29257953 MGI:6110984 NCBI chr19:37,670,624...37,675,101
Ensembl chr19:37,670,624...37,675,077
JBrowse link
G Fam183a family with sequence similarity 183 member A IBA
ISO
PMID:21873635
(MGI:5883143|PMID:27914912)
RGD PMID:27914912, PMID:21873635 MGI:5883143, RGD:13792537 NCBI chr10:44,736,547...44,746,907
Ensembl chr10:44,736,545...44,746,549
JBrowse link
G Fank1 fibronectin type III and ankyrin repeat domains 1 ISO (MGI:5883143|PMID:27914912) RGD PMID:27914912 MGI:5883143 NCBI chr 1:205,842,469...205,954,152
Ensembl chr 1:205,842,489...205,950,371
JBrowse link
G Ift122 intraflagellar transport 122 ISO (MGI:4888042|PMID:21209331) RGD PMID:21209331 MGI:4888042 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997
JBrowse link
G Ift20 intraflagellar transport 20 ISO (MGI:3053250|PMID:15337773) RGD PMID:15337773 MGI:3053250 NCBI chr10:65,805,808...65,811,353
Ensembl chr10:65,805,860...65,811,351
JBrowse link
G Ift52 intraflagellar transport 52 ISO (MGI:3689465|PMID:16775004) RGD PMID:16775004 MGI:3689465 NCBI chr 3:159,388,868...159,413,358
Ensembl chr 3:159,392,193...159,413,575
JBrowse link
G Ift88 intraflagellar transport 88 IBA
ISO
PMID:21873635
(MGI:3689465|PMID:16775004), (MGI:4361064|PMID:19654211), (MGI:5285455|PMID:21653639)
RGD PMID:16775004, PMID:19654211, PMID:21653639, PMID:21873635 MGI:3689465, MGI:4361064, MGI:5285455, RGD:13792537 NCBI chr15:37,690,417...37,786,855
Ensembl chr15:37,691,345...37,784,924
JBrowse link
G Invs inversin ISO (MGI:5578232|PMID:20169535) RGD PMID:20169535 MGI:5578232 NCBI chr 5:64,031,131...64,180,830
Ensembl chr 5:64,053,946...64,178,759
JBrowse link
G MGC94199 similar to RIKEN cDNA 2610301B20; EST AI428449 ISO (PMID:22177090) RGD PMID:22177090 NCBI chr 5:24,145,829...24,165,467
NCBI chr 5:23,358,464...23,377,697
Ensembl chr 5:23,358,841...23,377,651
Ensembl chr 5:23,358,841...23,377,651
JBrowse link
G Mlf1 myeloid leukemia factor 1 ISO (MGI:5883143|PMID:27914912) RGD PMID:27914912 MGI:5883143 NCBI chr 2:164,549,423...164,582,645
Ensembl chr 2:164,549,455...164,582,643
JBrowse link
G Mok MOK protein kinase ISO (MGI:5787768|PMID:25243405) RGD PMID:25243405 MGI:5787768 NCBI chr 6:135,228,755...135,259,645
Ensembl chr 6:135,228,803...135,259,603
JBrowse link
G Nek8 NIMA-related kinase 8 ISO (MGI:5578232|PMID:20169535) RGD PMID:20169535 MGI:5578232 NCBI chr10:65,404,489...65,439,059
Ensembl chr10:65,425,771...65,437,143
JBrowse link
G Nphp1 nephrocystin 1 ISO (MGI:5578232|PMID:20169535) RGD PMID:20169535 MGI:5578232 NCBI chr 3:120,316,048...120,370,089
Ensembl chr 3:120,316,047...120,373,500
JBrowse link
G Nphp3 nephrocystin 3 ISO (MGI:5578232|PMID:20169535) RGD PMID:20169535 MGI:5578232 NCBI chr 8:112,526,553...112,575,745
Ensembl chr 8:112,526,553...112,575,745
JBrowse link
G Nphp4 nephrocystin 4 IBA
ISO
PMID:21873635
(MGI:5578232|PMID:20169535)
RGD PMID:20169535, PMID:21873635 MGI:5578232, RGD:13792537 NCBI chr 5:169,647,581...169,744,662
Ensembl chr 5:169,659,188...169,744,660
JBrowse link
G Odad2 outer dynein arm docking complex subunit 2 ISO (PMID:23849778) RGD PMID:23849778 NCBI chr17:60,283,926...60,474,289
Ensembl chr17:60,287,203...60,474,031
JBrowse link
G Pqbp1 polyglutamine binding protein 1 IDA RGD PMID:23994472 RGD:9685166 NCBI chr  X:15,448,570...15,453,130
Ensembl chr  X:15,348,138...15,453,130
JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha IEA
ISO
GO_REF:0000107
(MGI:5308523|PMID:22007132)
Ensembl
RGD
PMID:22007132 GO_REF:0000107, MGI:5308523 NCBI chr19:25,095,089...25,118,869
Ensembl chr19:25,095,089...25,118,860
JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta ISO (MGI:5308523|PMID:22007132) RGD PMID:22007132 MGI:5308523 NCBI chr 2:252,602,197...252,691,886
Ensembl chr 2:252,605,307...252,691,886
JBrowse link
G Prkar2b protein kinase cAMP-dependent type II regulatory subunit beta ISO (MGI:5308523|PMID:22007132) RGD PMID:22007132 MGI:5308523 NCBI chr 6:51,265,509...51,356,383
Ensembl chr 6:51,265,515...51,356,383
JBrowse link
G Rab8a RAB8A, member RAS oncogene family ISO (MGI:5696765|PMID:24947469) RGD PMID:24947469 MGI:5696765 NCBI chr16:19,355,047...19,376,776
Ensembl chr16:19,355,048...19,376,776
JBrowse link
G RGD1561795 similar to RIKEN cDNA 1700012B09 IBA
ISO
PMID:21873635
(MGI:5883143|PMID:27914912)
RGD PMID:27914912, PMID:21873635 MGI:5883143, RGD:13792537 NCBI chr 8:13,275,270...13,292,587
Ensembl chr 8:13,275,270...13,290,773
JBrowse link
G Spaca9 sperm acrosome associated 9 IBA
ISO
PMID:21873635
(MGI:5883143|PMID:27914912)
RGD PMID:27914912, PMID:21873635 MGI:5883143, RGD:13792537 NCBI chr 3:7,269,851...7,279,253
Ensembl chr 3:7,269,853...7,278,758
JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:26487268)
Ensembl
UniProt
RGD
PMID:26487268 GO_REF:0000024, GO_REF:0000107 NCBI chr 9:98,621,499...98,658,223
Ensembl chr 9:98,621,506...98,656,901
JBrowse link
G Ttc26 tetratricopeptide repeat domain 26 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:66,090,178...66,147,998
Ensembl chr 4:66,090,209...66,148,001
JBrowse link
G Tulp3 TUB like protein 3 ISO (PMID:20889716) RGD PMID:20889716 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20602
    cellular anatomical entity 20292
      ciliary base 35
Path 2
Term Annotations click to browse term
  cellular_component 20602
    cellular anatomical entity 20292
      cell projection 2550
        plasma membrane bounded cell projection 2479
          cilium 686
            ciliary base 35
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.