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ONTOLOGY REPORT - ANNOTATIONS


Term:ciliary base
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Accession:GO:0097546 term browser browse the term
Definition:Area of the cilium (also called flagellum) where the basal body and the axoneme are anchored to the plasma membrane. The ciliary base encompasses the distal part of the basal body, transition fibers and transition zone and is structurally and functionally very distinct from the rest of the cilium. In this area proteins are sorted and filtered before entering the cilium, and many ciliary proteins localize specifically to this area.
Comment:Due to resolution issues, researchers are often unable to assign protein localization to more specific ciliary compartments such as the basal body, transition fibers or transition zone, and instead refer to 'ciliary base'. The terms GO:0036064 'ciliary basal body', GO:0097539 'ciliary transition fiber' and GO:0035869 'ciliary transition zone' represent strictly defined compartments at the ciliary base and should be used for annotation whenever possible. Also, note that cilia and eukaryotic flagella are deemed to be equivalent.
Synonyms:exact_synonym: cilial base;   cilium base;   flagellar base;   flagellum base



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ciliary base term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep126 centrosomal protein 126 located_in
is_active_in
ISO
IBA
(PMID:24867236)
PMID:21873635
RGD PMID:24867236 PMID:21873635 RGD:13792537 NCBI chr 8:5,200,576...5,267,740
Ensembl chr 8:5,218,509...5,267,467
JBrowse link
G Cfap36 cilia and flagella associated protein 36 located_in
is_active_in
ISO
IBA
(MGI:5925653|PMID:26455799)
PMID:21873635
RGD PMID:26455799 PMID:21873635 MGI:5925653, RGD:13792537 NCBI chr14:102,966,006...102,991,693
Ensembl chr14:102,966,001...102,991,555
JBrowse link
G Cfap418 cilia and flagella associated protein 418 located_in ISO (PMID:22177090) RGD PMID:22177090 NCBI chr 5:23,996,395...24,015,609
Ensembl chr 5:23,996,718...24,015,605
JBrowse link
G Cibar1 CBY1 interacting BAR domain containing 1 located_in ISO (PMID:27528616) RGD PMID:27528616 NCBI chr 5:25,613,993...25,632,440
Ensembl chr 5:25,614,033...25,632,489
JBrowse link
G Cilk1 ciliogenesis associated kinase 1 located_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5787768|PMID:25243405)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:25243405 GO_REF:0000024 GO_REF:0000107 MGI:5787768 NCBI chr 8:78,984,075...79,042,695
Ensembl chr 8:78,984,258...79,042,691
JBrowse link
G Clcn4 chloride voltage-gated channel 4 located_in
is_active_in
IEA
ISO
GO_REF:0000107
(MGI:5790162|PMID:26546361)
Ensembl
RGD
PMID:26546361 GO_REF:0000107 MGI:5790162 NCBI chr  X:23,729,194...23,795,391
Ensembl chr  X:23,729,338...23,793,238
JBrowse link
G Cluap1 clusterin associated protein 1 located_in IEA
ISO
GO_REF:0000107
(MGI:5509110|PMID:23742838)
Ensembl
RGD
PMID:23742838 GO_REF:0000107 MGI:5509110 NCBI chr10:11,587,963...11,619,711
Ensembl chr10:11,588,017...11,619,711
JBrowse link
G Disc1 DISC1 scaffold protein located_in ISO (PMID:20531939) RGD PMID:20531939 NCBI chr19:53,014,201...53,223,617
Ensembl chr19:53,014,616...53,219,778
JBrowse link
G Dnali1 dynein, axonemal, light intermediate chain 1 located_in ISO (MGI:6111002|PMID:29317443) RGD PMID:29317443 MGI:6111002 NCBI chr 5:137,318,475...137,327,313
Ensembl chr 5:137,318,477...137,327,336
JBrowse link
G Dync2i1 dynein 2 intermediate chain 1 colocalizes_with
located_in
ISO (PMID:25830415)
(PMID:23910462)
RGD PMID:23910462 PMID:25830415 NCBI chr 6:137,133,418...137,189,937
Ensembl chr 6:137,133,418...137,188,719
JBrowse link
G Dynlt2b dynein light chain Tctex-type 2B colocalizes_with ISO (PMID:25830415) RGD PMID:25830415 NCBI chr11:68,359,138...68,367,573
Ensembl chr11:68,358,263...68,367,499
JBrowse link
G Dzip1 DAZ interacting zinc finger protein 1 located_in ISO (MGI:5644575|PMID:25860027) RGD PMID:25860027 MGI:5644575 NCBI chr15:95,956,329...96,009,994
Ensembl chr15:95,956,398...96,010,066
JBrowse link
G Enkd1 enkurin domain containing 1 located_in ISO (MGI:6110984|PMID:29257953) RGD PMID:29257953 MGI:6110984 NCBI chr19:33,592,074...33,596,552
Ensembl chr19:33,592,078...33,596,545
JBrowse link
G Fam183a family with sequence similarity 183 member A is_active_in IBA
ISO
PMID:21873635
(MGI:5883143|PMID:27914912)
RGD PMID:27914912 PMID:21873635 MGI:5883143, RGD:13792537 NCBI chr10:43,509,823...43,520,042
Ensembl chr10:43,509,826...43,520,086
JBrowse link
G Fank1 fibronectin type III and ankyrin repeat domains 1 is_active_in ISO (MGI:5883143|PMID:27914912) RGD PMID:27914912 MGI:5883143 NCBI chr 1:188,577,512...188,685,501
Ensembl chr 1:188,577,575...188,685,504
JBrowse link
G Ift122 intraflagellar transport 122 part_of ISO (MGI:4888042|PMID:21209331) RGD PMID:21209331 MGI:4888042 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458
JBrowse link
G Ift20 intraflagellar transport 20 located_in ISO (MGI:3053250|PMID:15337773) RGD PMID:15337773 MGI:3053250 NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,432,633...63,438,124
JBrowse link
G Ift52 intraflagellar transport 52 located_in ISO (MGI:3689465|PMID:16775004) RGD PMID:16775004 MGI:3689465 NCBI chr 3:151,672,505...151,696,975
Ensembl chr 3:151,672,493...151,696,980
JBrowse link
G Ift88 intraflagellar transport 88 located_in
is_active_in
ISO
IBA
(MGI:3689465|PMID:16775004), (MGI:4361064|PMID:19654211), (MGI:5285455|PMID:21653639)
PMID:21873635
RGD PMID:16775004 PMID:19654211 PMID:21653639 PMID:21873635 MGI:3689465 MGI:4361064 MGI:5285455, RGD:13792537 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147
JBrowse link
G Invs inversin located_in ISO (MGI:5578232|PMID:20169535) RGD PMID:20169535 MGI:5578232 NCBI chr 5:62,610,916...62,763,813
Ensembl chr 5:62,610,968...62,763,350
JBrowse link
G Kcnf1 potassium voltage-gated channel modifier subfamily F member 1 is_active_in ISO (MGI:5790162|PMID:26546361) RGD PMID:26546361 MGI:5790162 NCBI chr 6:39,962,301...39,964,979
Ensembl chr 6:39,962,307...39,964,979
JBrowse link
G Kcnj10 potassium inwardly-rectifying channel, subfamily J, member 10 located_in
is_active_in
IEA
ISO
GO_REF:0000107
(MGI:5790162|PMID:26546361)
Ensembl
RGD
PMID:26546361 GO_REF:0000107 MGI:5790162 NCBI chr13:84,802,026...84,835,383
Ensembl chr13:84,802,009...84,835,461
JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 located_in
is_active_in
IEA
ISO
GO_REF:0000107
(MGI:5790162|PMID:26546361)
Ensembl
RGD
PMID:26546361 GO_REF:0000107 MGI:5790162 NCBI chr 1:198,291,711...198,624,683
Ensembl chr 1:198,291,766...198,624,669
JBrowse link
G Mlf1 myeloid leukemia factor 1 is_active_in ISO (MGI:5883143|PMID:27914912) RGD PMID:27914912 MGI:5883143 NCBI chr 2:151,648,492...151,681,654
Ensembl chr 2:151,648,511...151,681,652
JBrowse link
G Mok MOK protein kinase located_in ISO (MGI:5787768|PMID:25243405) RGD PMID:25243405 MGI:5787768 NCBI chr 6:129,823,794...129,854,669
Ensembl chr 6:129,823,795...129,854,700
JBrowse link
G Nek8 NIMA-related kinase 8 located_in ISO (MGI:5578232|PMID:20169535) RGD PMID:20169535 MGI:5578232 NCBI chr10:63,060,868...63,073,546
Ensembl chr10:63,061,253...63,072,416
JBrowse link
G Nphp1 nephrocystin 1 located_in ISO (MGI:5578232|PMID:20169535) RGD PMID:20169535 MGI:5578232 NCBI chr 3:114,960,650...115,016,234
Ensembl chr 3:114,960,650...115,016,234
JBrowse link
G Nphp3 nephrocystin 3 located_in ISO (MGI:5578232|PMID:20169535) RGD PMID:20169535 MGI:5578232 NCBI chr 8:104,621,908...104,662,383
Ensembl chr 8:104,621,864...104,662,383
JBrowse link
G Nphp4 nephrocystin 4 located_in
is_active_in
ISO
IBA
(MGI:5578232|PMID:20169535)
PMID:21873635
RGD PMID:20169535 PMID:21873635 MGI:5578232, RGD:13792537 NCBI chr 5:162,986,157...163,073,708
Ensembl chr 5:162,988,370...163,073,706
JBrowse link
G Odad2 outer dynein arm docking complex subunit 2 located_in ISO (PMID:23849778) RGD PMID:23849778 NCBI chr17:55,216,877...55,409,872
Ensembl chr17:55,218,991...55,409,399
JBrowse link
G Pqbp1 polyglutamine binding protein 1 IDA RGD PMID:23994472 RGD:9685166 NCBI chr  X:14,603,516...14,608,091
Ensembl chr  X:14,603,539...14,608,087
JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha located_in IEA
ISO
GO_REF:0000107
(MGI:5308523|PMID:22007132)
Ensembl
RGD
PMID:22007132 GO_REF:0000107 MGI:5308523 NCBI chr19:24,155,081...24,178,430
Ensembl chr19:24,155,090...24,178,430
JBrowse link
G Prkacb protein kinase cAMP-activated catalytic subunit beta located_in ISO (MGI:5308523|PMID:22007132) RGD PMID:22007132 MGI:5308523 NCBI chr 2:235,636,878...235,726,928
Ensembl chr 2:235,636,885...235,726,198
JBrowse link
G Prkar2b protein kinase cAMP-dependent type II regulatory subunit beta located_in ISO (MGI:5308523|PMID:22007132) RGD PMID:22007132 MGI:5308523 NCBI chr 6:48,563,659...48,653,933
Ensembl chr 6:48,563,662...48,653,933
JBrowse link
G Rab8a RAB8A, member RAS oncogene family located_in ISO (MGI:5696765|PMID:24947469) RGD PMID:24947469 MGI:5696765 NCBI chr16:17,654,027...17,675,385
Ensembl chr16:17,654,034...17,675,678
JBrowse link
G RGD1561795 similar to RIKEN cDNA 1700012B09 is_active_in IBA
ISO
PMID:21873635
(MGI:5883143|PMID:27914912)
RGD PMID:27914912 PMID:21873635 MGI:5883143, RGD:13792537 NCBI chr 8:11,603,225...11,618,729
Ensembl chr 8:11,603,225...11,618,729
JBrowse link
G Spaca9 sperm acrosome associated 9 is_active_in IBA
ISO
PMID:21873635
(MGI:5883143|PMID:27914912)
RGD PMID:27914912 PMID:21873635 MGI:5883143, RGD:13792537 NCBI chr 3:12,019,376...12,028,801
Ensembl chr 3:12,019,363...12,029,119
JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 located_in ISO
ISS
IEA
(PMID:26487268)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:26487268 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:92,073,622...92,110,427
Ensembl chr 9:92,073,640...92,108,977
JBrowse link
G Ttc26 tetratricopeptide repeat domain 26 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:67,090,622...67,154,707
Ensembl chr 4:67,090,660...67,147,903
JBrowse link
G Tulp3 TUB like protein 3 located_in ISO (PMID:20889716) RGD PMID:20889716 NCBI chr 4:161,590,478...161,632,514
Ensembl chr 4:161,590,479...161,632,149
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19969
    cellular anatomical entity 19676
      ciliary base 40
Path 2
Term Annotations click to browse term
  cellular_component 19969
    cellular anatomical entity 19676
      organelle 13088
        membrane-bounded organelle 11697
          cilium 722
            ciliary base 40
paths to the root