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ONTOLOGY REPORT - ANNOTATIONS


Term:ciliary transition fiber
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Accession:GO:0097539 term browser browse the term
Definition:A nine-bladed, propeller-like protein complex that links the distal end of the basal body and the cilium to the plasma membrane. Functions in protein sorting and gating (i.e. active and passive transport of proteins in and out of the cilium).
Comment:In mammals, ciliary transition fibers comprise at least five components (Ccdc41/Cep83, Cep89/Cep123, Sclt1, Fbf1, and Cep164) (PMID:24469809).
Synonyms:exact_synonym: cilial transition fiber;   cilial transition fibre;   ciliary transition fibre;   cilium transition fiber;   cilium transition fibre
 broad_synonym: transition fiber;   transition fibre
 related_synonym: centriolar distal appendage;   distal appendage of basal body;   distal appendage of centriole;   distal appendage of mother centriole


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ciliary transition fiber term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cenpf centromere protein F ISO (MGI:MGI:5694347|PMID:25564561)
(PMID:25564561)
RGD PMID:25564561 MGI:MGI:5694347 NCBI chr13:108,132,499...108,178,609
Ensembl chr13:108,132,499...108,178,609
JBrowse link
G Cep164 centrosomal protein 164 ISO
IBA
(PMID:23348840)
PMID:21873635
(MGI:MGI:5554981|PMID:23955340), (MGI:MGI:6209354|PMID:29891944)
RGD PMID:23348840, PMID:23955340, PMID:29891944, PMID:21873635 MGI:MGI:5554981, MGI:MGI:6209354, RGD:13792537 NCBI chr 8:50,069,282...50,132,477
Ensembl chr 8:50,070,579...50,126,413
JBrowse link
G Cep83 centrosomal protein 83 ISO (PMID:23348840) RGD PMID:23348840 NCBI chr 7:35,739,553...35,847,618
Ensembl chr 7:35,773,928...35,847,617
JBrowse link
G Cep89 centrosomal protein 89 ISO (MGI:MGI:5502817|PMID:23789104)
(PMID:23348840), (PMID:23789104)
RGD PMID:23348840, PMID:23789104 MGI:MGI:5502817 NCBI chr 1:91,663,723...91,705,979
Ensembl chr 1:91,663,736...91,706,094
JBrowse link
G Dzip1 DAZ interacting zinc finger protein 1 ISO MGI:MGI:5557987 (MGI:MGI:5554981|PMID:23955340) RGD PMID:23955340 MGI:MGI:5554981 NCBI chr15:104,117,551...104,168,574
Ensembl chr15:104,117,556...104,170,958
JBrowse link
G Fbf1 Fas binding factor 1 ISO (PMID:23348840) RGD PMID:23348840 NCBI chr10:104,692,791...104,718,630
Ensembl chr10:104,692,755...104,718,621
JBrowse link
G LOC100911256 ninein-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:91,207,750...91,273,661
Ensembl chr 6:91,207,178...91,250,138
JBrowse link
G Nin ninein ISO
IBA
(MGI:MGI:5554981|PMID:23955340), (MGI:MGI:5694347|PMID:25564561), (MGI:MGI:5696763|PMID:10934040), (MGI:MGI:5696765|PMID:24947469)
PMID:21873635
RGD PMID:10934040, PMID:23955340, PMID:24947469, PMID:25564561, PMID:21873635 MGI:MGI:5554981, MGI:MGI:5694347, MGI:MGI:5696763, MGI:MGI:5696765, RGD:13792537 NCBI chr 6:92,423,412...92,527,776
Ensembl chr 6:92,433,381...92,527,711
JBrowse link
G Odf2 outer dense fiber of sperm tails 2 ISO (MGI:MGI:5696765|PMID:24947469) RGD PMID:24947469 MGI:MGI:5696765 NCBI chr 3:8,449,733...8,495,764
Ensembl chr 3:8,450,275...8,496,008
JBrowse link
G Sclt1 sodium channel and clathrin linker 1 ISO (PMID:23348840) RGD PMID:23348840 NCBI chr 2:128,523,376...128,675,668
Ensembl chr 2:128,523,636...128,675,408
JBrowse link
G Tchp trichoplein, keratin filament binding ISO (MGI:MGI:5696765|PMID:24947469) RGD PMID:24947469 MGI:MGI:5696765 NCBI chr12:47,638,278...47,653,602
Ensembl chr12:47,638,274...47,653,638
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20609
    protein-containing complex 6093
      ciliary transition fiber 11
Path 2
Term Annotations click to browse term
  cellular_component 20609
    cellular anatomical entity 20358
      cell projection 2549
        plasma membrane bounded cell projection 2477
          cilium 684
            ciliary transition fiber 11
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.