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ONTOLOGY REPORT - ANNOTATIONS

Term:perinucleolar compartment
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Accession:GO:0097356 term browser browse the term
Definition:The perinucleolar compartment (PNC) is a subnuclear structure associated with, but structurally distinct from, the nucleolus. The PNC contains large amounts of the heterogeneous nuclear ribonucleoprotein complex (hnRNP) called hnRNP 1 (PTB). Many RNA binding proteins as well as RNA polymerase III transcripts are highly enriched in this compartment. PTB and pol III transcripts are required for the integrity of the PNC.
Synonyms:exact_synonym: perinucleolar region


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perinucleolar compartment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf1 CUGBP, Elav-like family member 1 located_in ISO (PMID:18164289) RGD PMID:18164289 NCBI chr 3:76,924,591...76,999,429
Ensembl chr 3:76,924,613...76,999,426 		JBrowse link
G Eppk1 epiplakin 1 located_in ISO
IEA 		(PMID:15671067)
GO_REF:0000107 		RGD
Ensembl		 PMID:15671067 GO_REF:0000107 NCBI chr 7:107,816,919...107,842,946
Ensembl chr 7:107,817,693...107,831,159 		JBrowse link
G Pdcl3 phosducin-like 3 located_in ISO
IEA 		(PMID:26059764)
GO_REF:0000107 		RGD
Ensembl		 PMID:26059764 GO_REF:0000107 NCBI chr 9:41,234,322...41,243,769
Ensembl chr 9:41,234,234...41,243,735 		JBrowse link
G Sorl1 sortilin related receptor 1 located_in ISO
IEA 		(PMID:11082041)
GO_REF:0000107 		RGD
Ensembl		 PMID:11082041 GO_REF:0000107 NCBI chr 8:51,238,713...51,401,458
Ensembl chr 8:42,341,704...42,504,513 		JBrowse link
G Zdhhc19 zinc finger DHHC-type palmitoyltransferase 19 located_in ISO
IEA 		(PMID:20074548)
GO_REF:0000107 		RGD
Ensembl		 PMID:20074548 GO_REF:0000107 NCBI chr11:68,277,847...68,289,110
Ensembl chr11:68,277,848...68,288,954 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 21349
    cellular anatomical structure 21053
      perinucleolar compartment 5
Path 2
Term Annotations click to browse term
  cellular_component 21349
    cellular anatomical structure 21053
      organelle 14206
        membrane-bounded organelle 12757
          intracellular membrane-bounded organelle 12184
            nucleus 7685
              nuclear lumen 4241
                perinucleolar compartment 5
paths to the root