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ONTOLOGY REPORT - ANNOTATIONS

Term:perinucleolar compartment
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Accession:GO:0097356 term browser browse the term
Definition:The perinucleolar compartment (PNC) is a subnuclear structure associated with, but structurally distinct from, the nucleolus. The PNC contains large amounts of the heterogeneous nuclear ribonucleoprotein complex (hnRNP) called hnRNP 1 (PTB). Many RNA binding proteins as well as RNA polymerase III transcripts are highly enriched in this compartment. PTB and pol III transcripts are required for the integrity of the PNC.
Synonyms:exact_synonym: perinucleolar region


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perinucleolar compartment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf1 CUGBP, Elav-like family member 1 part_of ISO (PMID:18164289) RGD PMID:18164289 NCBI chr 3:76,924,591...76,999,429
Ensembl chr 3:76,924,613...76,999,426 		JBrowse link
G Eppk1 epiplakin 1 located_in ISO (PMID:15671067) RGD PMID:15671067 NCBI chr 7:107,816,919...107,842,946
Ensembl chr 7:107,817,693...107,831,159 		JBrowse link
G Pdcl3 phosducin-like 3 located_in ISO
IEA		 (PMID:26059764)
GO_REF:0000107		 RGD
Ensembl		 PMID:26059764 GO_REF:0000107 NCBI chr 9:41,234,322...41,243,769
Ensembl chr 9:41,234,234...41,243,735 		JBrowse link
G Sorl1 sortilin related receptor 1 located_in ISO (MGI:6393363|PMID:11082041) RGD PMID:11082041 MGI:6393363 NCBI chr 8:42,341,704...42,504,435
Ensembl chr 8:42,341,704...42,504,513 		JBrowse link
G Zdhhc19 zinc finger DHHC-type palmitoyltransferase 19 located_in ISO (PMID:20074548) RGD PMID:20074548 NCBI chr11:68,277,847...68,289,110
Ensembl chr11:68,277,848...68,288,954 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20183
    cellular anatomical entity 20022
      perinucleolar compartment 5
Path 2
Term Annotations click to browse term
  cellular_component 20183
    cellular anatomical entity 20022
      organelle 13374
        membrane-bounded organelle 11896
          intracellular membrane-bounded organelle 11370
            nucleus 7047
              nuclear lumen 3998
                perinucleolar compartment 5
paths to the root