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ONTOLOGY REPORT - ANNOTATIONS

Term:ammonium ion metabolic process
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Accession:GO:0097164 term browser browse the term
Definition:The chemical reactions and pathways involving the ammonium ion.
Synonyms:exact_synonym: ammonium ion metabolism
 related_synonym: ammonium metabolic process


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choline catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmgdh dimethylglycine dehydrogenase precursor involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:93,810,944...93,889,331
Ensembl chr13:93,810,941...93,889,341 		JBrowse link
choline metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase involved_in ISO
IBA		 RGD
GO_Central
MGI		 PMID:1133098 PMID:8737018 PMID:16628397 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:1580871 RGD:2301187 RGD:2301207 NCBI chr 5:137,286,516...137,292,728
Ensembl chr 5:137,285,781...137,292,728 		JBrowse link
G Bche butyrylcholinesterase involved_in ISO
IBA		 RGD
GO_Central
MGI		 PMID:126256 PMID:1133098 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:2301187 RGD:2301195 NCBI chr 3:73,543,138...73,615,767
Ensembl chr 3:73,543,141...73,615,748 		JBrowse link
G Chka choline kinase alpha involved_in ISO RGD
MGI		 PMID:12815193 GO_REF:0000096 MGI:4417868 RGD:1626304 NCBI chr19:3,901,585...3,944,368
Ensembl chr19:3,901,773...3,944,369 		JBrowse link
G Enpp6 ectonucleotide pyrophosphatase/phosphodiesterase 6 involved_in
acts_upstream_of_or_within		 IMP
IBA
IDA
ISO		 (MGI:6217381|PMID:26888014)
(PMID:15788404)		 UniProt
GO_Central
MGI		 PMID:15788404 PMID:26888014 GO_REF:0000033 GO_REF:0000119 MGI:4834177 MGI:6217381 NCBI chr 8:47,439,920...47,549,797
Ensembl chr 8:47,439,922...47,549,797 		JBrowse link
glycine betaine biosynthetic process from choline term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chdh choline dehydrogenase involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr14:29,730,957...29,762,423
Ensembl chr14:29,730,980...29,762,484 		JBrowse link
histamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdc histidine decarboxylase involved_in
acts_upstream_of_or_within		 ISO
IMP
IBA		 (PMID:11478947) MGI
GO_Central		 PMID:11478947 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 2:126,435,579...126,465,942
Ensembl chr 2:126,435,587...126,461,219 		JBrowse link
G Prg3 proteoglycan 3 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:84,818,540...84,826,903
Ensembl chr 2:84,818,559...84,824,230 		JBrowse link
histamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnmt histamine N-methyltransferase involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:23,892,923...23,939,756
Ensembl chr 2:23,892,922...23,939,406 		JBrowse link
histamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdc histidine decarboxylase involved_in ISO RGD
MGI		 PMID:5898 PMID:4449071 PMID:7075603 PMID:9525922 GO_REF:0000096 MGI:4417868 RGD:2303726 RGD:2303727 RGD:2303728 RGD:2303735 NCBI chr 2:126,435,579...126,465,942
Ensembl chr 2:126,435,587...126,461,219 		JBrowse link
G Hnmt histamine N-methyltransferase involved_in ISO RGD
MGI		 PMID:15739896 GO_REF:0000096 GO_REF:0000119 MGI:4417868 MGI:4834177 RGD:152985534 NCBI chr 2:23,892,923...23,939,756
Ensembl chr 2:23,892,922...23,939,406 		JBrowse link
G Trh thyrotropin releasing hormone involved_in ISO
IBA		 RGD
GO_Central
MGI		 PMID:17760865 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:7241067 NCBI chr 6:92,219,042...92,221,631
Ensembl chr 6:92,219,042...92,221,631 		JBrowse link
regulation of serotonin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh2 aldehyde dehydrogenase 2, mitochondrial involved_in IMP (MGI:6827320|PMID:26711020) UniProt PMID:26711020 MGI:6827320 NCBI chr 5:121,704,090...121,731,887
Ensembl chr 5:121,704,090...121,731,887 		JBrowse link
G Fev FEV transcription factor, ETS family member involved_in NAS (MGI:5816438|PMID:25642596) ParkinsonsUK-UCL PMID:25642596 MGI:5816438 NCBI chr 1:74,920,660...74,924,632
Ensembl chr 1:74,920,668...74,924,578 		JBrowse link
G Gch1 GTP cyclohydrolase 1 involved_in NAS (MGI:5816438|PMID:25642596) ParkinsonsUK-UCL PMID:25642596 MGI:5816438 NCBI chr14:47,391,352...47,426,870
Ensembl chr14:47,391,352...47,426,870 		JBrowse link
serotonin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddc dopa decarboxylase involved_in ISO
IBA		 RGD
GO_Central
MGI		 PMID:10027744 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:5129182 NCBI chr11:11,764,101...11,848,144
Ensembl chr11:11,764,101...11,848,144 		JBrowse link
G Tph1 tryptophan hydroxylase 1 involved_in IMP (MGI:2683993|PMID:14697203) UniProt PMID:14697203 MGI:2683993 NCBI chr 7:46,294,065...46,321,961
Ensembl chr 7:46,294,065...46,321,961 		JBrowse link
G Tph2 tryptophan hydroxylase 2 involved_in
acts_upstream_of_or_within		 IEA UniProt GO_REF:0000002 GO_REF:0000043 MGI:1354194 MGI:2152098 NCBI chr10:114,914,546...115,020,927
Ensembl chr10:114,914,546...115,020,927 		JBrowse link
serotonin biosynthetic process from tryptophan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp2d22 cytochrome P450, family 2, subfamily d, polypeptide 22 involved_in ISO RGD
MGI		 PMID:23098818 GO_REF:0000096 MGI:4417868 RGD:11353778 NCBI chr15:82,254,728...82,264,461
Ensembl chr15:82,254,728...82,264,461 		JBrowse link
G Tph2 tryptophan hydroxylase 2 acts_upstream_of_or_within IC (PMID:12584449) MGI PMID:12584449 NCBI chr10:114,914,546...115,020,927
Ensembl chr10:114,914,546...115,020,927 		JBrowse link
serotonin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase, Ca++ transporting, plasma membrane 2 acts_upstream_of_or_within IMP (PMID:2765934) MGI PMID:2765934 NCBI chr 6:113,720,803...114,019,574
Ensembl chr 6:113,720,792...114,019,574 		JBrowse link
G Atp7a ATPase, Cu++ transporting, alpha polypeptide acts_upstream_of_or_within IMP (PMID:8174230) MGI PMID:8174230 NCBI chr  X:105,070,830...105,171,766
Ensembl chr  X:105,070,882...105,168,532 		JBrowse link
G Btbd9 BTB domain containing 9 acts_upstream_of_or_within IMP (PMID:22678064) MGI PMID:22678064 NCBI chr17:30,434,498...30,801,595
Ensembl chr17:30,434,498...30,795,462 		JBrowse link
G Grin2a glutamate receptor, ionotropic, NMDA2A (epsilon 1) acts_upstream_of_or_within IMP (PMID:11160454) MGI PMID:11160454 NCBI chr16:9,385,765...9,813,744
Ensembl chr16:9,385,762...9,813,424 		JBrowse link
G Htr1a 5-hydroxytryptamine (serotonin) receptor 1A involved_in IMP (MGI:1927024|PMID:11080193) UniProt PMID:11080193 MGI:1927024 NCBI chr13:105,580,040...105,584,630
Ensembl chr13:105,580,147...105,584,630 		JBrowse link
G Maoa monoamine oxidase A involved_in ISO Y402A, Y407A, Y410A had an impact on the properties of the protein while Y402F, Y410F had little effect; the residues are near the C406 FAD binding site RGD
MGI		 PMID:11263670 PMID:11754741 GO_REF:0000096 MGI:4417868 RGD:1600709 RGD:1600713 NCBI chr  X:16,485,937...16,554,051
Ensembl chr  X:16,485,937...16,554,057 		JBrowse link
G Pde1b phosphodiesterase 1B, Ca2+-calmodulin dependent acts_upstream_of_or_within IMP (PMID:17559891) MGI PMID:17559891 NCBI chr15:103,411,461...103,438,483
Ensembl chr15:103,411,461...103,438,479 		JBrowse link
G Rnf180 ring finger protein 180 acts_upstream_of_or_within
involved_in		 IMP
IBA		 (PMID:23926250) MGI
GO_Central		 PMID:23926250 GO_REF:0000033 NCBI chr13:105,267,075...105,431,406
Ensembl chr13:105,266,509...105,431,323 		JBrowse link
G Spr sepiapterin reductase acts_upstream_of_or_within IMP (PMID:16532389) MGI PMID:16532389 NCBI chr 6:85,110,662...85,114,746
Ensembl chr 6:85,107,158...85,114,748 		JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 ISO RGD PMID:15936112 RGD:4891926 NCBI chr13:69,721,568...69,759,611
Ensembl chr13:69,721,568...69,759,561 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28573
    metabolic process 11001
      ammonium ion metabolic process 27
        choline metabolic process + 6
        histamine metabolic process + 4
        serotonin metabolic process + 17
paths to the root