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ONTOLOGY REPORT - ANNOTATIONS


Term:ammonium ion metabolic process
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Accession:GO:0097164 term browser browse the term
Definition:The chemical reactions and pathways involving the ammonium ion.
Synonyms:exact_synonym: ammonium ion metabolism
 related_synonym: ammonium metabolic process


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choline catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmgdh dimethylglycine dehydrogenase involved_in TAS
ISO
IEA
(PMID:10102904)
GO_REF:0000107
RGD
Ensembl
PMID:10102904, PMID:1710985 GO_REF:0000107, RGD:632576 NCBI chr 2:23,289,376...23,370,360
Ensembl chr 2:23,289,374...23,370,477
JBrowse link
G Sardh sarcosine dehydrogenase involved_in TAS
NAS
PMID:9839943 RGD
UniProt
PMID:9839943, PMID:9839943, PMID:9839943 RGD:634034, RGD:634034, RGD:634034 NCBI chr 3:5,737,203...5,802,153
Ensembl chr 3:5,737,200...5,802,129
JBrowse link
choline metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase IMP
IDA
RGD PMID:16628397, PMID:1133098, PMID:8737018 RGD:1580871, RGD:2301187, RGD:2301207 NCBI chr12:22,472,358...22,477,052
Ensembl chr12:22,472,358...22,478,753
JBrowse link
G Bche butyrylcholinesterase IDA RGD PMID:1133098, PMID:126256 RGD:2301187, RGD:2301195 NCBI chr 2:171,104,476...171,196,186
Ensembl chr 2:171,100,140...171,196,395
JBrowse link
G Chka choline kinase alpha IDA RGD PMID:12815193 RGD:1626304 NCBI chr 1:219,076,618...219,126,221
Ensembl chr 1:219,077,771...219,126,220
JBrowse link
G Dmgdh dimethylglycine dehydrogenase TAS RGD PMID:1710985 RGD:632576 NCBI chr 2:23,289,376...23,370,360
Ensembl chr 2:23,289,374...23,370,477
JBrowse link
G Enpp6 ectonucleotide pyrophosphatase/phosphodiesterase 6 involved_in
acts_upstream_of_or_within
ISO
ISS
IBA
(PMID:15788404)
(MGI:6217381|PMID:26888014)
(MGI:3587554|PMID:15788404)
GO_REF:0000024
PMID:21873635
(MGI:3587554|PMID:15788404), (MGI:6217381|PMID:26888014)
RGD
UniProt
PMID:15788404 PMID:26888014, PMID:21873635, PMID:21873635 GO_REF:0000024 MGI:3587554 MGI:6217381, RGD:13792537, RGD:13792537 NCBI chr16:48,315,500...48,437,258
Ensembl chr16:48,315,914...48,437,242
JBrowse link
glycine betaine biosynthetic process from choline term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh7a1 aldehyde dehydrogenase 7 family, member A1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr18:51,619,007...51,651,267
Ensembl chr18:51,619,007...51,651,267
JBrowse link
G Chdh choline dehydrogenase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr16:6,078,083...6,109,386
Ensembl chr16:6,078,122...6,109,382
JBrowse link
histamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdc histidine decarboxylase acts_upstream_of_or_within
involved_in
IEA
ISO
IBA
GO_REF:0000041
MGI:2182618 (MGI:2138019|PMID:11478947)
GO_REF:0000107
(PMID:22767596)
PMID:21873635
UniProt
RGD
Ensembl
PMID:11478947 PMID:22767596, PMID:21873635, PMID:21873635 GO_REF:0000041 GO_REF:0000107 MGI:2138019, RGD:13792537, RGD:13792537 NCBI chr 3:119,057,524...119,075,599
Ensembl chr 3:119,057,517...119,075,619
JBrowse link
G Prg3 proteoglycan 3, pro eosinophil major basic protein 2 involved_in ISO (PMID:10318872) RGD PMID:10318872 NCBI chr 3:72,395,194...72,401,254
Ensembl chr 3:72,395,218...72,401,318
JBrowse link
histamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnmt histamine N-methyltransferase involved_in ISO
ISS
(PMID:26206890)
GO_REF:0000024
RGD
UniProt
PMID:26206890 GO_REF:0000024 NCBI chr 3:905,111...937,038
Ensembl chr 3:904,765...937,102
JBrowse link
histamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdc histidine decarboxylase IDA RGD PMID:4449071, PMID:9525922, PMID:7075603, PMID:5898 RGD:2303726, RGD:2303735, RGD:2303728, RGD:2303727 NCBI chr 3:119,057,524...119,075,599
Ensembl chr 3:119,057,517...119,075,619
JBrowse link
G Hnmt histamine N-methyltransferase involved_in ISO (PMID:23505051) RGD PMID:23505051 NCBI chr 3:905,111...937,038
Ensembl chr 3:904,765...937,102
JBrowse link
G Trh thyrotropin releasing hormone involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:17760865, PMID:21873635, PMID:21873635 RGD:7241067, RGD:13792537, RGD:13792537 NCBI chr 4:124,110,716...124,113,242
Ensembl chr 4:124,110,716...124,113,242
JBrowse link
serotonin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddc dopa decarboxylase involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:10027744, PMID:21873635, PMID:21873635 RGD:5129182, RGD:13792537, RGD:13792537 NCBI chr14:91,905,919...91,996,816
Ensembl chr14:91,905,919...91,996,774
JBrowse link
G Tph2 tryptophan hydroxylase 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 7:58,042,279...58,149,220
Ensembl chr 7:58,042,281...58,149,061
JBrowse link
serotonin biosynthetic process from tryptophan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp2d4 cytochrome P450, family 2, subfamily d, polypeptide 4 IDA RGD PMID:23098818 RGD:11353778 NCBI chr 7:123,599,264...123,608,436
Ensembl chr 7:123,599,266...123,608,436
JBrowse link
G Tph1 tryptophan hydroxylase 1 TAS RGD PMID:12153488 RGD:625621 NCBI chr 1:102,669,868...102,699,442
Ensembl chr 1:102,669,868...102,699,442
JBrowse link
serotonin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1857092 (MGI:68065|PMID:2765934) RGD PMID:2765934 MGI:68065 NCBI chr 4:145,704,779...145,948,997
Ensembl chr 4:145,703,046...146,016,325
JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856098 (MGI:65000|PMID:8174230) RGD PMID:8174230 MGI:65000 NCBI chr  X:77,076,085...77,193,644
Ensembl chr  X:77,076,106...77,193,644
JBrowse link
G Btbd9 BTB domain containing 9 acts_upstream_of_or_within ISO MGI:4127237 (MGI:5436392|PMID:22678064) RGD PMID:22678064 MGI:5436392 NCBI chr20:8,899,286...9,253,936
Ensembl chr20:8,901,931...9,249,820
JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A acts_upstream_of_or_within
involved_in
IEA
ISO
GO_REF:0000107
MGI:1928285 (MGI:2384280|PMID:11160454)
Ensembl
RGD
PMID:11160454 GO_REF:0000107 MGI:2384280 NCBI chr10:5,707,806...6,123,568
Ensembl chr10:5,930,298...6,119,990
JBrowse link
G Htr1a 5-hydroxytryptamine receptor 1A involved_in ISS
ISO
GO_REF:0000024
(MGI:1927024|PMID:11080193)
UniProt
RGD
PMID:11080193 GO_REF:0000024 MGI:1927024 NCBI chr 2:36,246,628...36,247,896
Ensembl chr 2:36,246,628...36,247,896
JBrowse link
G Maoa monoamine oxidase A IDA
IMP
Y402A, Y407A, Y410A had an impact on the properties of the protein while Y402F, Y410F had little effect; the residues are near the C406 FAD binding site RGD PMID:11754741, PMID:11754741, PMID:11263670 RGD:1600709, RGD:1600709, RGD:1600713 NCBI chr  X:6,554,698...6,620,722
Ensembl chr  X:6,554,698...6,620,722
JBrowse link
G Pde1b phosphodiesterase 1B acts_upstream_of_or_within ISO MGI:3604470 (MGI:3769297|PMID:17559891) RGD PMID:17559891 MGI:3769297 NCBI chr 7:145,117,951...145,147,711
Ensembl chr 7:145,117,951...145,145,376
JBrowse link
G Rnf180 ring finger protein 180 involved_in
acts_upstream_of_or_within
ISO
IBA
(MGI:5505713|PMID:23926250)
PMID:21873635
RGD PMID:23926250, PMID:21873635, PMID:21873635 MGI:5505713, RGD:13792537, RGD:13792537 NCBI chr 2:35,718,100...35,892,578
Ensembl chr 2:35,718,889...35,870,578
JBrowse link
G Spr sepiapterin reductase acts_upstream_of_or_within ISO MGI:3757641 (MGI:3722569|PMID:16532389) RGD PMID:16532389 MGI:3722569 NCBI chr 4:116,912,343...116,916,073
Ensembl chr 4:116,912,351...116,916,236
JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 IEP RGD PMID:15936112 RGD:4891926 NCBI chr 1:36,320,504...36,354,694
Ensembl chr 1:36,320,461...36,354,756
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20082
    metabolic process 12142
      nitrogen compound metabolic process 10306
        ammonium ion metabolic process 26
          choline metabolic process + 8
          histamine metabolic process + 4
          serotonin metabolic process + 14
paths to the root