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ONTOLOGY REPORT - ANNOTATIONS


Term:ammonium ion metabolic process
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Accession:GO:0097164 term browser browse the term
Definition:The chemical reactions and pathways involving the ammonium ion.
Synonyms:exact_synonym: ammonium ion metabolism
 related_synonym: ammonium metabolic process



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choline catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmgdh dimethylglycine dehydrogenase involved_in TAS
ISO
IEA
(PMID:10102904)
GO_REF:0000107
RGD
Ensembl
PMID:10102904 PMID:1710985 GO_REF:0000107, RGD:632576 NCBI chr 2:24,912,600...24,987,533
Ensembl chr 2:24,912,578...24,987,528
JBrowse link
G Sardh sarcosine dehydrogenase involved_in TAS
NAS
PMID:9839943 RGD
UniProt
PMID:9839943 PMID:9839943 RGD:634034, RGD:634034 NCBI chr 3:10,510,553...10,575,342
Ensembl chr 3:10,510,553...10,573,874
JBrowse link
choline metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase involved_in IMP
IBA
IDA
PMID:21873635 RGD
GO_Central
PMID:16628397 PMID:21873635 PMID:1133098 PMID:8737018 RGD:1580871, RGD:13792537, RGD:2301187, RGD:2301207 NCBI chr12:19,407,359...19,413,713
Ensembl chr12:19,407,360...19,413,651
JBrowse link
G Bche butyrylcholinesterase involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:1133098 PMID:21873635 PMID:126256 RGD:2301187, RGD:13792537, RGD:2301195 NCBI chr 2:158,308,674...158,401,148
Ensembl chr 2:158,307,584...158,401,148
JBrowse link
G Chka choline kinase alpha IDA RGD PMID:12815193 RGD:1626304 NCBI chr 1:201,076,804...201,125,517
Ensembl chr 1:201,076,860...201,125,516
JBrowse link
G Dmgdh dimethylglycine dehydrogenase TAS RGD PMID:1710985 RGD:632576 NCBI chr 2:24,912,600...24,987,533
Ensembl chr 2:24,912,578...24,987,528
JBrowse link
G Enpp6 ectonucleotide pyrophosphatase/phosphodiesterase 6 involved_in
acts_upstream_of_or_within
IBA
ISO
ISS
PMID:21873635
(MGI:6217381|PMID:26888014)
(MGI:3587554|PMID:15788404)
GO_REF:0000024
(PMID:15788404)
RGD
UniProt
PMID:15788404 PMID:26888014 PMID:21873635 GO_REF:0000024 MGI:3587554 MGI:6217381, RGD:13792537 NCBI chr16:45,165,883...45,294,126
Ensembl chr16:45,169,178...45,294,077
JBrowse link
glycine betaine biosynthetic process from choline term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh7a1 aldehyde dehydrogenase 7 family, member A1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr18:50,003,242...50,042,193
Ensembl chr18:50,009,934...50,042,193
JBrowse link
G Chdh choline dehydrogenase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr16:5,194,269...5,225,541
Ensembl chr16:5,194,269...5,225,537
JBrowse link
histamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdc histidine decarboxylase involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
PMID:21873635
MGI:2182618 (MGI:2138019|PMID:11478947)
GO_REF:0000107
GO_REF:0000041
(PMID:22767596)
RGD
Ensembl
UniProt
PMID:11478947 PMID:22767596 PMID:21873635 GO_REF:0000041 GO_REF:0000107 MGI:2138019, RGD:13792537 NCBI chr 3:113,847,256...113,865,334
Ensembl chr 3:113,847,260...113,865,341
JBrowse link
G Prg3 proteoglycan 3, pro eosinophil major basic protein 2 involved_in ISO (PMID:10318872) RGD PMID:10318872 NCBI chr 3:70,071,970...70,078,103
Ensembl chr 3:70,072,497...70,078,102
JBrowse link
histamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnmt histamine N-methyltransferase involved_in ISO
ISS
(PMID:26206890)
GO_REF:0000024
RGD
UniProt
PMID:26206890 GO_REF:0000024 NCBI chr 3:6,591,804...6,623,821
Ensembl chr 3:6,591,463...6,624,012
JBrowse link
histamine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hdc histidine decarboxylase IDA RGD PMID:4449071 PMID:9525922 PMID:7075603 PMID:5898 RGD:2303726, RGD:2303735, RGD:2303728, RGD:2303727 NCBI chr 3:113,847,256...113,865,334
Ensembl chr 3:113,847,260...113,865,341
JBrowse link
G Hnmt histamine N-methyltransferase involved_in ISO (PMID:23505051) RGD PMID:23505051 NCBI chr 3:6,591,804...6,623,821
Ensembl chr 3:6,591,463...6,624,012
JBrowse link
G Trh thyrotropin releasing hormone involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:17760865 PMID:21873635 RGD:7241067, RGD:13792537 NCBI chr 4:124,742,111...124,777,094
Ensembl chr 4:124,742,111...124,744,637
JBrowse link
regulation of serotonin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh2 aldehyde dehydrogenase 2 family member acts_upstream_of_or_within ISO (PMID:26711020) RGD PMID:26711020 NCBI chr12:34,949,549...34,982,527 JBrowse link
serotonin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddc dopa decarboxylase involved_in IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:10027744 PMID:21873635 RGD:5129182, RGD:13792537 NCBI chr14:86,378,685...86,469,189
Ensembl chr14:86,378,685...86,469,208
JBrowse link
G Tph1 tryptophan hydroxylase 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:2683993|PMID:14697203)
UniProt
RGD
PMID:14697203 GO_REF:0000024 MGI:2683993 NCBI chr 1:97,157,375...97,178,415
Ensembl chr 1:97,157,409...97,178,344
JBrowse link
G Tph2 tryptophan hydroxylase 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 7:50,685,694...50,789,424
Ensembl chr 7:50,685,694...50,789,424
JBrowse link
serotonin biosynthetic process from tryptophan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp2d4 cytochrome P450, family 2, subfamily d, polypeptide 4 IDA RGD PMID:23098818 RGD:11353778 NCBI chr 7:113,882,584...113,891,754
Ensembl chr 7:113,881,618...113,891,759
JBrowse link
G Tph1 tryptophan hydroxylase 1 TAS RGD PMID:12153488 RGD:625621 NCBI chr 1:97,157,375...97,178,415
Ensembl chr 1:97,157,409...97,178,344
JBrowse link
serotonin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1857092 (MGI:68065|PMID:2765934) RGD PMID:2765934 MGI:68065 NCBI chr 4:146,896,332...147,140,665
Ensembl chr 4:146,896,332...147,140,665
JBrowse link
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856098 (MGI:65000|PMID:8174230) RGD PMID:8174230 MGI:65000 NCBI chr  X:71,094,144...71,201,550
Ensembl chr  X:71,094,202...71,198,354
JBrowse link
G Btbd9 BTB domain containing 9 acts_upstream_of_or_within ISO MGI:4127237 (MGI:5436392|PMID:22678064) RGD PMID:22678064 MGI:5436392 NCBI chr20:8,286,337...8,645,567
Ensembl chr20:8,288,711...8,643,960
JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1928285 (MGI:2384280|PMID:11160454)
Ensembl
RGD
PMID:11160454 GO_REF:0000107 MGI:2384280 NCBI chr10:5,630,684...6,043,341
Ensembl chr10:5,631,369...6,044,637
JBrowse link
G Htr1a 5-hydroxytryptamine receptor 1A involved_in ISS
ISO
GO_REF:0000024
(MGI:1927024|PMID:11080193)
UniProt
RGD
PMID:11080193 GO_REF:0000024 MGI:1927024 NCBI chr 2:36,694,174...36,695,442
Ensembl chr 2:36,694,174...36,695,442
JBrowse link
G Maoa monoamine oxidase A IDA
IMP
Y402A, Y407A, Y410A had an impact on the properties of the protein while Y402F, Y410F had little effect; the residues are near the C406 FAD binding site RGD PMID:11754741 PMID:11754741 PMID:11263670 RGD:1600709, RGD:1600709, RGD:1600713 NCBI chr  X:6,032,172...6,098,308
Ensembl chr  X:6,030,795...6,099,593
JBrowse link
G Pde1b phosphodiesterase 1B acts_upstream_of_or_within ISO MGI:3604470 (MGI:3769297|PMID:17559891) RGD PMID:17559891 MGI:3769297 NCBI chr 7:134,627,378...134,654,581
Ensembl chr 7:134,627,322...134,654,580
JBrowse link
G Rnf180 ring finger protein 180 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:5505713|PMID:23926250)
RGD PMID:23926250 PMID:21873635 MGI:5505713, RGD:13792537 NCBI chr 2:36,330,285...36,511,168
Ensembl chr 2:36,330,292...36,512,614
JBrowse link
G Spr sepiapterin reductase acts_upstream_of_or_within ISO MGI:3757641 (MGI:3722569|PMID:16532389) RGD PMID:16532389 MGI:3722569 NCBI chr 4:117,671,948...117,676,292
Ensembl chr 4:117,671,949...117,675,678
JBrowse link
G Srd5a1 steroid 5 alpha-reductase 1 IEP RGD PMID:15936112 RGD:4891926 NCBI chr 1:33,686,069...33,720,468
Ensembl chr 1:33,686,391...33,720,461
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19497
    metabolic process 11824
      nitrogen compound metabolic process 9994
        ammonium ion metabolic process 27
          choline metabolic process + 8
          histamine metabolic process + 4
          serotonin metabolic process + 15
paths to the root