Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:mesenchymal cell apoptotic process
go back to main search page
Accession:GO:0097152 term browser browse the term
Definition:Any apoptotic process in a mesenchymal cell. A mesenchymal cell is a loosely associated cell that is part of the connective tissue in an organism. Mesenchymal cells give rise to more mature connective tissue cell types.
Synonyms:narrow_synonym: mesenchymal cell apoptosis


show annotations for term's descendants           Sort by:
mesenchymal cell apoptotic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ednra endothelin receptor type A involved_in ISO MGI:1857473 (MGI:3700083|PMID:17294360) RGD PMID:17294360 MGI:3700083 NCBI chr19:30,233,540...30,303,727
Ensembl chr19:30,233,571...30,297,049 		JBrowse link
G Etv6 ETS variant transcription factor 6 acts_upstream_of_or_within ISO MGI:2177950 (MGI:1095693|PMID:9250681) RGD PMID:9250681 MGI:1095693 NCBI chr 4:166,849,031...167,085,211
Ensembl chr 4:166,847,686...167,084,992 		JBrowse link
G Gdf5 growth differentiation factor 5 acts_upstream_of ISO MGI:1855974 (MGI:3513212|PMID:15542031) RGD PMID:15542031 MGI:3513212 NCBI chr 3:144,454,306...144,458,757
Ensembl chr 3:144,454,338...144,458,612 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of		 IEA
ISO		 GO_REF:0000107
MGI:1857719 (MGI:1337194|PMID:10328919)		 Ensembl
RGD		 PMID:10328919 GO_REF:0000107 MGI:1337194 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Hoxa13 homeo box A13 acts_upstream_of ISO MGI:2152356 (MGI:2662001|PMID:12783783) RGD PMID:12783783 MGI:2662001 NCBI chr 4:81,358,956...81,361,091
Ensembl chr 4:81,358,956...81,361,091 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of ISO MGI:97169|MGI:98297 (MGI:3851667|PMID:19422820) RGD PMID:19422820 MGI:3851667 NCBI chr14:72,961,170...72,964,970
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Msx2 msh homeobox 2 involved_in
acts_upstream_of		 IEA
ISO		 GO_REF:0000107
MGI:97168|MGI:98297 (MGI:3851667|PMID:19422820)		 Ensembl
RGD		 PMID:19422820 GO_REF:0000107 MGI:3851667 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of		 IEA
ISO		 GO_REF:0000107
MGI:1934261 (MGI:3851667|PMID:19422820)		 Ensembl
RGD		 PMID:19422820 GO_REF:0000107 MGI:3851667 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of ISO MGI:2385468 (MGI:5523405|PMID:24058167) RGD PMID:24058167 MGI:5523405 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5284768|PMID:18231833)		 UniProt
RGD		 PMID:18231833 GO_REF:0000024 MGI:5284768 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
mesenchymal cell apoptotic process involved in metanephros development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B involved_in
acts_upstream_of		 IEA
ISO		 GO_REF:0000107
MGI:1857856 (MGI:4430439|PMID:20040500)		 Ensembl
RGD		 PMID:20040500 GO_REF:0000107 MGI:4430439 NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888 		JBrowse link
G Wt1 WT1 transcription factor acts_upstream_of ISO MGI:1857268 (MGI:62488|PMID:8395349) RGD PMID:8395349 MGI:62488 NCBI chr 3:91,566,540...91,613,653
Ensembl chr 3:91,567,001...91,613,643 		JBrowse link
mesenchymal cell apoptotic process involved in nephron morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 acts_upstream_of ISO MGI:1857654 (MGI:86404|PMID:9056639) RGD PMID:9056639 MGI:86404 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
negative regulation of mesenchymal cell apoptotic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within ISO MGI:2653208 (MGI:3686561|PMID:16937369) RGD PMID:16937369 MGI:3686561 NCBI chr14:5,565,562...5,571,669
Ensembl chr14:5,565,629...5,571,672 		JBrowse link
G Gdf5 growth differentiation factor 5 acts_upstream_of_or_within ISO MGI:1855974 (MGI:3513212|PMID:15542031) RGD PMID:15542031 MGI:3513212 NCBI chr 3:144,454,306...144,458,757
Ensembl chr 3:144,454,338...144,458,612 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857719 (MGI:1337194|PMID:10328919)		 Ensembl
RGD		 PMID:10328919 GO_REF:0000107 MGI:1337194 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Pou3f4 POU class 3 homeobox 4 involved_in ISS
ISO		 GO_REF:0000024
UniProtKB:P70323 (MGI:5284768|PMID:18231833)		 UniProt
RGD		 PMID:18231833 GO_REF:0000024 MGI:5284768 NCBI chr  X:75,858,646...75,859,923
Ensembl chr  X:75,858,646...75,859,923 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1934261 (MGI:3851667|PMID:19422820)		 Ensembl
RGD		 PMID:19422820 GO_REF:0000107 MGI:3851667 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO MGI:2385468 (MGI:5523405|PMID:24058167) RGD PMID:24058167 MGI:5523405 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Syne1 spectrin repeat containing nuclear envelope protein 1 IMP RGD PMID:23863972 RGD:13209017 NCBI chr 1:41,512,146...41,983,382
Ensembl chr 1:41,512,030...41,983,322 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in ISO
ISS		 UniProtKB:P62515 (MGI:5284768|PMID:18231833)
GO_REF:0000024		 RGD
UniProt		 PMID:18231833 GO_REF:0000024 MGI:5284768 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
negative regulation of mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1857856 (MGI:4430439|PMID:20040500)
GO_REF:0000107		 RGD
Ensembl		 PMID:20040500 GO_REF:0000107 MGI:4430439 NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888 		JBrowse link
negative regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISO
ISS		 (MGI:3704067|PMID:17314325)
GO_REF:0000024		 RGD
UniProt		 PMID:17314325 GO_REF:0000024 MGI:3704067 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Pax8 paired box 8 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3704067|PMID:17314325)		 UniProt
RGD		 PMID:17314325 GO_REF:0000024 MGI:3704067 NCBI chr 3:7,185,721...7,242,363
Ensembl chr 3:7,185,723...7,242,363 		JBrowse link
negative regulation of mesenchymal cell apoptotic process involved in metanephros development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1857856 (MGI:4430439|PMID:20040500)
GO_REF:0000107		 RGD
Ensembl		 PMID:20040500 GO_REF:0000107 MGI:4430439 NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888 		JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3704067|PMID:17314325)		 UniProt
RGD		 PMID:17314325 GO_REF:0000024 MGI:3704067 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Pax8 paired box 8 involved_in ISS
ISO		 GO_REF:0000024
(MGI:3704067|PMID:17314325)		 UniProt
RGD		 PMID:17314325 GO_REF:0000024 MGI:3704067 NCBI chr 3:7,185,721...7,242,363
Ensembl chr 3:7,185,723...7,242,363 		JBrowse link
G Wt1 WT1 transcription factor acts_upstream_of_or_within ISO MGI:1857268 (MGI:62488|PMID:8395349) RGD PMID:8395349 MGI:62488 NCBI chr 3:91,566,540...91,613,653
Ensembl chr 3:91,567,001...91,613,643 		JBrowse link
negative regulation of mesenchymal cell apoptotic process involved in nephron morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO MGI:1857654 (MGI:86404|PMID:9056639) RGD PMID:9056639 MGI:86404 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788 		JBrowse link
positive regulation of mesenchymal cell apoptotic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa13 homeo box A13 acts_upstream_of_or_within ISO MGI:2152356 (MGI:2662001|PMID:12783783) RGD PMID:12783783 MGI:2662001 NCBI chr 4:81,358,956...81,361,091
Ensembl chr 4:81,358,956...81,361,091 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO MGI:97169|MGI:98297 (MGI:3851667|PMID:19422820) RGD PMID:19422820 MGI:3851667 NCBI chr14:72,961,170...72,964,970
Ensembl chr14:72,961,148...72,964,966 		JBrowse link
G Msx2 msh homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:97168|MGI:98297 (MGI:3851667|PMID:19422820)		 Ensembl
RGD		 PMID:19422820 GO_REF:0000107 MGI:3851667 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19746
    cellular process 18159
      cell death 2233
        programmed cell death 2100
          apoptotic process 2025
            mesenchymal cell apoptotic process 18
              mesenchymal cell apoptotic process involved in metanephros development + 4
              mesenchymal cell apoptotic process involved in nephron morphogenesis + 4
              negative regulation of mesenchymal cell apoptotic process + 13
              positive regulation of mesenchymal cell apoptotic process + 3
              regulation of mesenchymal cell apoptotic process + 16
paths to the root