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ONTOLOGY REPORT - ANNOTATIONS


Term:mesenchymal cell apoptotic process
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Accession:GO:0097152 term browser browse the term
Definition:Any apoptotic process in a mesenchymal cell. A mesenchymal cell is a loosely associated cell that is part of the connective tissue in an organism. Mesenchymal cells give rise to more mature connective tissue cell types.
Synonyms:narrow_synonym: mesenchymal cell apoptosis



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mesenchymal cell apoptotic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ednra endothelin receptor type A involved_in ISO MGI:1857473 (MGI:3700083|PMID:17294360) RGD PMID:17294360 MGI:3700083 NCBI chr19:30,233,540...30,303,727
Ensembl chr19:30,233,571...30,297,049
JBrowse link
G Etv6 ETS variant transcription factor 6 acts_upstream_of_or_within ISO MGI:2177950 (MGI:1095693|PMID:9250681) RGD PMID:9250681 MGI:1095693 NCBI chr 4:166,849,031...167,085,211
Ensembl chr 4:166,847,686...167,084,992
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5284768|PMID:18231833)
UniProt
RGD
PMID:18231833 GO_REF:0000024 MGI:5284768 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
JBrowse link
negative regulation of mesenchymal cell apoptotic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within ISO MGI:2653208 (MGI:3686561|PMID:16937369) RGD PMID:16937369 MGI:3686561 NCBI chr14:5,565,562...5,571,669
Ensembl chr14:5,565,629...5,571,672
JBrowse link
G Gdf5 growth differentiation factor 5 acts_upstream_of_or_within ISO MGI:1855974 (MGI:3513212|PMID:15542031) RGD PMID:15542031 MGI:3513212 NCBI chr 3:144,454,306...144,458,757
Ensembl chr 3:144,454,338...144,458,612
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857719 (MGI:1337194|PMID:10328919)
Ensembl
RGD
PMID:10328919 GO_REF:0000107 MGI:1337194 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
JBrowse link
G Pou3f4 POU class 3 homeobox 4 involved_in ISS
ISO
GO_REF:0000024
UniProtKB:P70323 (MGI:5284768|PMID:18231833)
UniProt
RGD
PMID:18231833 GO_REF:0000024 MGI:5284768 NCBI chr  X:75,858,646...75,859,923
Ensembl chr  X:75,858,646...75,859,923
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1934261 (MGI:3851667|PMID:19422820)
Ensembl
RGD
PMID:19422820 GO_REF:0000107 MGI:3851667 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO MGI:2385468 (MGI:5523405|PMID:24058167) RGD PMID:24058167 MGI:5523405 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Syne1 spectrin repeat containing nuclear envelope protein 1 IMP RGD PMID:23863972 RGD:13209017 NCBI chr 1:41,512,146...41,983,382
Ensembl chr 1:41,512,030...41,983,322
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in ISS
ISO
GO_REF:0000024
UniProtKB:P62515 (MGI:5284768|PMID:18231833)
UniProt
RGD
PMID:18231833 GO_REF:0000024 MGI:5284768 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
JBrowse link
negative regulation of mesenchymal cell apoptotic process involved in mesonephric nephron morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO MGI:1857856 (MGI:4430439|PMID:20040500) RGD PMID:20040500 MGI:4430439 NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888
JBrowse link
negative regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:3704067|PMID:17314325)
UniProt
RGD
PMID:17314325 GO_REF:0000024 MGI:3704067 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
JBrowse link
G Pax8 paired box 8 involved_in ISS
ISO
GO_REF:0000024
(MGI:3704067|PMID:17314325)
UniProt
RGD
PMID:17314325 GO_REF:0000024 MGI:3704067 NCBI chr 3:7,185,721...7,242,363
Ensembl chr 3:7,185,723...7,242,363
JBrowse link
negative regulation of mesenchymal cell apoptotic process involved in metanephros development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO MGI:1857856 (MGI:4430439|PMID:20040500) RGD PMID:20040500 MGI:4430439 NCBI chr10:68,735,894...68,789,888
Ensembl chr10:68,735,894...68,789,888
JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:3704067|PMID:17314325)
UniProt
RGD
PMID:17314325 GO_REF:0000024 MGI:3704067 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
JBrowse link
G Pax8 paired box 8 involved_in ISS
ISO
GO_REF:0000024
(MGI:3704067|PMID:17314325)
UniProt
RGD
PMID:17314325 GO_REF:0000024 MGI:3704067 NCBI chr 3:7,185,721...7,242,363
Ensembl chr 3:7,185,723...7,242,363
JBrowse link
G Wt1 WT1 transcription factor acts_upstream_of_or_within ISO MGI:1857268 (MGI:62488|PMID:8395349) RGD PMID:8395349 MGI:62488 NCBI chr 3:91,566,540...91,613,653
Ensembl chr 3:91,567,001...91,613,643
JBrowse link
negative regulation of mesenchymal cell apoptotic process involved in nephron morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO MGI:1857654 (MGI:86404|PMID:9056639) RGD PMID:9056639 MGI:86404 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
JBrowse link
positive regulation of mesenchymal cell apoptotic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa13 homeo box A13 acts_upstream_of_or_within ISO MGI:2152356 (MGI:2662001|PMID:12783783) RGD PMID:12783783 MGI:2662001 NCBI chr 4:81,358,956...81,361,091
Ensembl chr 4:81,358,956...81,361,091
JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO MGI:97169|MGI:98297 (MGI:3851667|PMID:19422820) RGD PMID:19422820 MGI:3851667 NCBI chr14:72,961,170...72,964,970
Ensembl chr14:72,961,148...72,964,966
JBrowse link
G Msx2 msh homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:97168|MGI:98297 (MGI:3851667|PMID:19422820)
Ensembl
RGD
PMID:19422820 GO_REF:0000107 MGI:3851667 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,097,103...11,102,879
JBrowse link

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  biological_process 19391
    cellular process 18252
      cell death 2136
        programmed cell death 1951
          apoptotic process 1893
            mesenchymal cell apoptotic process 18
              mesenchymal cell apoptotic process involved in metanephros development + 4
              mesenchymal cell apoptotic process involved in nephron morphogenesis + 4
              negative regulation of mesenchymal cell apoptotic process + 13
              positive regulation of mesenchymal cell apoptotic process + 3
              regulation of mesenchymal cell apoptotic process + 16
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