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ONTOLOGY REPORT - ANNOTATIONS

Term:postsynaptic density assembly
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Accession:GO:0097107 term browser browse the term
Definition:The aggregation, arrangement and bonding together of a set of components to form a postsynaptic density, a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse.
Synonyms:exact_synonym: PSD assembly;   post synaptic density assembly

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postsynaptic density assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pten phosphatase and tensin homolog involved_in ISO (MGI:3772418|PMID:18082964) RGD PMID:18082964 MGI:3772418 NCBI chr 1:251,421,814...251,487,634
Ensembl chr 1:251,421,596...251,487,832 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:4948759|PMID:21423165)
GO_REF:0000107		 BHF-UCL
RGD
Ensembl		 PMID:21423165 GO_REF:0000024 GO_REF:0000107 MGI:4948759 NCBI chr 7:130,474,278...130,534,679
Ensembl chr 7:130,474,279...130,534,679 		JBrowse link
gephyrin clustering involved in postsynaptic density assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nlgn2 neuroligin 2 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:5284797|PMID:15620359)
GO_REF:0000107		 BHF-UCL
RGD
Ensembl		 PMID:15620359 GO_REF:0000024 GO_REF:0000107 MGI:5284797 NCBI chr10:56,431,586...56,444,847
Ensembl chr10:56,431,573...56,444,847 		JBrowse link
G Nrxn1 neurexin 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5284797|PMID:15620359), (MGI:5285129|PMID:21424692)		 BHF-UCL
RGD		 PMID:15620359 PMID:21424692 GO_REF:0000024 MGI:5284797 MGI:5285129 NCBI chr 6:13,886,757...15,191,660
Ensembl chr 6:13,886,740...15,191,660 		JBrowse link
G Nrxn2 neurexin 2 involved_in ISS
ISO
IEA		 GO_REF:0000024
(MGI:5285129|PMID:21424692)
GO_REF:0000107		 BHF-UCL
RGD
Ensembl		 PMID:21424692 GO_REF:0000024 GO_REF:0000107 MGI:5285129 NCBI chr 1:221,792,191...221,908,047
Ensembl chr 1:221,792,221...221,908,049 		JBrowse link
G Zdhhc12 zinc finger DHHC-type palmitoyltransferase 12 involved_in ISS
ISO		 GO_REF:0000024
(MGI:5586946|PMID:25025157)		 UniProt
RGD		 PMID:25025157 GO_REF:0000024 MGI:5586946 NCBI chr 3:8,656,397...8,659,102
Ensembl chr 3:8,656,412...8,659,102 		JBrowse link
regulation of postsynaptic density assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi3bp ABI family member 3 binding protein involved_in IMP PMID:22485184 ARUK-UCL PMID:22485184 RGD:42721990 NCBI chr11:46,206,932...46,422,791
Ensembl chr11:46,208,075...46,369,577 		JBrowse link
G Cbln1 cerebellin 1 precursor involved_in ISO (MGI:4441214|PMID:20395510) RGD PMID:20395510 MGI:4441214 NCBI chr19:20,607,507...20,611,316
Ensembl chr19:20,607,507...20,611,316 		JBrowse link
G Grid2 glutamate ionotropic receptor delta type subunit 2 involved_in IEA
ISO		 GO_REF:0000107
(MGI:4441214|PMID:20395510)		 Ensembl
RGD		 PMID:20395510 GO_REF:0000107 MGI:4441214 NCBI chr 4:94,068,112...95,476,864
Ensembl chr 4:94,696,965...95,442,778 		JBrowse link
G Il1rap interleukin 1 receptor accessory protein involved_in IEA
ISO		 GO_REF:0000107
(MGI:5315316|PMID:22357843)		 Ensembl
RGD		 PMID:22357843 GO_REF:0000107 MGI:5315316 NCBI chr11:77,456,648...77,593,208
Ensembl chr11:77,463,954...77,593,207 		JBrowse link
G Lrfn1 leucine rich repeat and fibronectin type III domain containing 1 involved_in IMP
IDA		 PMID:16630835 SynGO PMID:16630835, PMID:16630835 RGD:13702351, RGD:13702351 NCBI chr 1:85,290,887...85,308,498
Ensembl chr 1:85,291,462...85,300,825 		JBrowse link
G Lrfn4 leucine rich repeat and fibronectin type III domain containing 4 involved_in IBA
IMP
IDA		 PMID:21873635
PMID:20410109		 GO_Central
SynGO		 PMID:21873635, PMID:20410109, PMID:20410109 RGD:13792537, RGD:13702463, RGD:13702463 NCBI chr 1:219,850,037...219,855,771
Ensembl chr 1:219,850,037...219,853,329 		JBrowse link
G Lrrc4b leucine rich repeat containing 4B involved_in IMP
IBA
IDA		 PMID:19252495
PMID:21873635		 SynGO
GO_Central		 PMID:19252495, PMID:21873635, PMID:19252495 RGD:13702321, RGD:13792537, RGD:13702321 NCBI chr 1:100,434,418...100,468,914
Ensembl chr 1:100,447,998...100,468,868 		JBrowse link
G LRRTM1 leucine rich repeat transmembrane neuronal 1 involved_in IMP
IDA		 PMID:19285470 SynGO PMID:19285470, PMID:19285470 RGD:8554788, RGD:8554788 NCBI chr 4:108,300,927...108,316,373
Ensembl chr 4:108,301,129...108,316,373 		JBrowse link
G Lrrtm2 leucine rich repeat transmembrane neuronal 2 involved_in IDA
IMP		 PMID:19285470 SynGO PMID:19285470, PMID:19285470 RGD:8554788, RGD:8554788 NCBI chr18:28,012,877...28,017,925
Ensembl chr18:28,012,877...28,017,925 		JBrowse link
G Nptx1 neuronal pentraxin 1 involved_in IDA
EXP
IMP		 PMID:29024665 SynGO PMID:29024665, PMID:29024665, PMID:29024665 RGD:13702141, RGD:13702141, RGD:13702141 NCBI chr10:108,682,637...108,691,592
Ensembl chr10:108,682,638...108,691,367 		JBrowse link
G Nrxn1 neurexin 1 involved_in ISO (MGI:5294741|PMID:21410790) RGD PMID:21410790 MGI:5294741 NCBI chr 6:13,886,757...15,191,660
Ensembl chr 6:13,886,740...15,191,660 		JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 involved_in EXP
IDA		 PMID:21262467 SynGO PMID:21262467, PMID:21262467 RGD:13702219, RGD:13702219 NCBI chr 1:139,890,537...140,262,503
Ensembl chr 1:139,890,560...140,262,503 		JBrowse link
G Ptprd protein tyrosine phosphatase, receptor type, D involved_in EXP
ISO
IDA		 PMID:29024665
(MGI:5315316|PMID:22357843)		 RGD PMID:22357843, PMID:29024665, PMID:29024665 MGI:5315316, RGD:13702141, RGD:13702141 NCBI chr 5:92,862,229...93,514,071
Ensembl chr 5:92,862,267...93,244,202 		JBrowse link
G Ptprs protein tyrosine phosphatase, receptor type, S involved_in IDA
ISO
IMP
EXP
IEA		 PMID:21262467
(MGI:4887276|PMID:21262467)
GO_REF:0000107		 RGD
Ensembl		 PMID:21262467, PMID:21262467, PMID:21262467, PMID:21262467 GO_REF:0000107 MGI:4887276, RGD:13702219, RGD:13702219, RGD:13702219 NCBI chr 9:10,585,360...10,646,205
Ensembl chr 9:10,603,813...10,645,939 		JBrowse link
G Sipa1l1 signal-induced proliferation-associated 1 like 1 involved_in IMP
IDA		 PMID:11502259 SynGO PMID:11502259, PMID:11502259 RGD:8554032, RGD:8554032 NCBI chr 6:106,052,212...106,163,249
Ensembl chr 6:106,039,991...106,163,302 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19599
    cellular process 18451
      cellular component organization or biogenesis 6720
        cellular component organization 6475
          organelle organization 4054
            postsynaptic specialization organization 50
              postsynaptic density organization 44
                postsynaptic density assembly 20
                  gephyrin clustering involved in postsynaptic density assembly 4
                  regulation of postsynaptic density assembly 15
Path 2
Term Annotations click to browse term
  biological_process 19599
    cellular process 18451
      cellular component organization or biogenesis 6720
        cellular component organization 6475
          cell junction organization 795
            synapse organization 508
              postsynapse organization 220
                postsynaptic specialization organization 50
                  postsynaptic density organization 44
                    postsynaptic density assembly 20
                      gephyrin clustering involved in postsynaptic density assembly 4
                      regulation of postsynaptic density assembly 15
paths to the root