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ONTOLOGY REPORT - ANNOTATIONS


Term:postsynaptic density organization
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Accession:GO:0097106 term browser browse the term
Definition:A process that results in the assembly, arrangement of constituent parts, or disassembly of a postsynaptic density, a region that lies adjacent to the cytoplasmic face of the postsynaptic membrane at excitatory synapse.
Synonyms:exact_synonym: PSD organization;   post synaptic density organization;   postsynaptic density organisation


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postsynaptic density organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tmem108 transmembrane protein 108 involved_in IBA
ISO
PMID:21873635
(MGI:5825380|PMID:28096412)
RGD PMID:28096412, PMID:21873635 MGI:5825380, RGD:13792537 NCBI chr 8:111,968,568...112,265,623
Ensembl chr 8:111,970,288...111,984,572
JBrowse link
gephyrin clustering involved in postsynaptic density assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nlgn2 neuroligin 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5284797|PMID:15620359)
GO_REF:0000107
BHF-UCL
RGD
Ensembl
PMID:15620359 GO_REF:0000024 GO_REF:0000107 MGI:5284797 NCBI chr10:56,431,586...56,444,847
Ensembl chr10:56,431,573...56,444,847
JBrowse link
G Nrxn1 neurexin 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5284797|PMID:15620359), (MGI:5285129|PMID:21424692)
BHF-UCL
RGD
PMID:15620359 PMID:21424692 GO_REF:0000024 MGI:5284797 MGI:5285129 NCBI chr 6:13,886,757...15,191,660
Ensembl chr 6:13,886,740...15,191,660
JBrowse link
G Nrxn2 neurexin 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5285129|PMID:21424692)
GO_REF:0000107
BHF-UCL
RGD
Ensembl
PMID:21424692 GO_REF:0000024 GO_REF:0000107 MGI:5285129 NCBI chr 1:221,792,191...221,908,047
Ensembl chr 1:221,792,221...221,908,049
JBrowse link
G Zdhhc12 zinc finger DHHC-type palmitoyltransferase 12 involved_in ISS
ISO
GO_REF:0000024
(MGI:5586946|PMID:25025157)
UniProt
RGD
PMID:25025157 GO_REF:0000024 MGI:5586946 NCBI chr 3:8,656,397...8,659,102
Ensembl chr 3:8,656,412...8,659,102
JBrowse link
maintenance of postsynaptic density structure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arf6 ADP-ribosylation factor 6 involved_in IDA
IMP
PMID:16672654 SynGO PMID:16672654, PMID:16672654 RGD:8554141, RGD:8554141 NCBI chr 6:91,697,109...91,698,257
Ensembl chr 6:91,697,109...91,698,255
JBrowse link
G Dgkz diacylglycerol kinase zeta involved_in ISO (MGI:3843409|PMID:19229292) RGD PMID:19229292 MGI:3843409 NCBI chr 3:80,844,002...80,886,487
Ensembl chr 3:80,844,005...80,875,817
JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr11:72,164,566...72,378,895
Ensembl chr11:72,163,749...72,378,895
JBrowse link
G Dlg2 discs large MAGUK scaffold protein 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:154,916,274...157,274,077
Ensembl chr 1:156,552,328...157,269,747
JBrowse link
G Dlg3 discs large MAGUK scaffold protein 3 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr  X:70,596,246...70,648,529
Ensembl chr  X:70,596,576...70,648,532
JBrowse link
G Dlg4 discs large MAGUK scaffold protein 4 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:56,625,845...56,655,543
Ensembl chr10:56,627,411...56,653,599
JBrowse link
G Dlgap1 DLG associated protein 1 involved_in IC GO_REF:0000036 SynGO GO_REF:0000036 NCBI chr 9:118,277,046...119,159,807
Ensembl chr 9:118,586,179...119,158,196
JBrowse link
G Magi2 membrane associated guanylate kinase, WW and PDZ domain containing 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:10,995,241...12,472,423
Ensembl chr 4:10,995,234...11,610,518
JBrowse link
G Mpp2 membrane palmitoylated protein 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:89,998,284...90,030,766
Ensembl chr10:89,999,917...90,030,639
JBrowse link
G Shank2 SH3 and multiple ankyrin repeat domains 2 involved_in IC
ISO
GO_REF:0000036
(MGI:5432970|PMID:22699620)
SynGO
RGD
PMID:22699620 GO_REF:0000036 MGI:5432970 NCBI chr 1:217,149,156...217,593,950
Ensembl chr 1:217,151,166...217,592,763
JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in IC
IEA
GO_REF:0000036
GO_REF:0000108
SynGO
GOC
GO_REF:0000036 GO_REF:0000108 NCBI chr 7:130,474,278...130,534,679
Ensembl chr 7:130,474,279...130,534,679
JBrowse link
maintenance of postsynaptic specialization structure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cadm1 cell adhesion molecule 1 involved_in ISO (MGI:4879065|PMID:21145003) RGD PMID:21145003 MGI:4879065 NCBI chr 8:51,858,906...52,200,591
Ensembl chr 8:52,127,399...52,189,722
JBrowse link
G Git1 GIT ArfGAP 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:62,656,000...62,664,467
Ensembl chr10:62,656,000...62,664,466
JBrowse link
G Hspa8 heat shock protein family A (Hsp70) member 8 involved_in EXP
IMP
IDA
PMID:21209184 SynGO PMID:21209184, PMID:21209184, PMID:21209184 RGD:13702189, RGD:13702189, RGD:13702189 NCBI chr 8:44,989,401...44,993,261
Ensembl chr 8:44,990,014...44,993,179
JBrowse link
G Ophn1 oligophrenin 1 involved_in EXP
IMP
IDA
PMID:24966368 SynGO PMID:24966368, PMID:24966368, PMID:24966368 RGD:13702374, RGD:13702374, RGD:13702374 NCBI chr  X:68,185,865...68,579,518
Ensembl chr  X:68,189,161...68,563,137
JBrowse link
G Syngap1 synaptic Ras GTPase activating protein 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:6189460|PMID:27565345)
Ensembl
RGD
PMID:27565345 GO_REF:0000107 MGI:6189460 NCBI chr20:5,535,434...5,564,657
Ensembl chr20:5,535,432...5,564,437
JBrowse link
negative regulation of postsynaptic density organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfl1 cofilin 1 IMP RGD PMID:26169356 RGD:11074527 NCBI chr 1:220,869,805...220,873,337
Ensembl chr 1:220,869,805...220,873,337
JBrowse link
postsynaptic density assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pten phosphatase and tensin homolog involved_in ISO (MGI:3772418|PMID:18082964) RGD PMID:18082964 MGI:3772418 NCBI chr 1:251,421,814...251,487,634
Ensembl chr 1:251,421,596...251,487,832
JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:4948759|PMID:21423165)
GO_REF:0000107
BHF-UCL
RGD
Ensembl
PMID:21423165 GO_REF:0000024 GO_REF:0000107 MGI:4948759 NCBI chr 7:130,474,278...130,534,679
Ensembl chr 7:130,474,279...130,534,679
JBrowse link
postsynaptic density protein 95 clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrrc4 leucine rich repeat containing 4 acts_upstream_of_or_within
involved_in
ISO
IBA
(MGI:3664681|PMID:16980967)
PMID:21873635
RGD PMID:16980967, PMID:21873635 MGI:3664681, RGD:13792537 NCBI chr 4:56,110,658...56,114,254
Ensembl chr 4:56,110,658...56,114,254
JBrowse link
G Nlgn1 neuroligin 1 involved_in IDA
ISO
ISS
IMP
PMID:19450252
(MGI:2665153|PMID:12796785), (MGI:5284797|PMID:15620359), (MGI:5306551|PMID:20869594)
GO_REF:0000024
PMID:12930820
RGD
BHF-UCL
PMID:12796785 PMID:15620359 PMID:20869594, PMID:19450252, PMID:19450252, PMID:12930820 GO_REF:0000024 MGI:2665153 MGI:5284797 MGI:5306551, RGD:8553605, RGD:8553605, RGD:8554754 NCBI chr 2:111,057,291...111,973,681
Ensembl chr 2:111,057,291...111,793,326
JBrowse link
G Nlgn2 neuroligin 2 involved_in IEA
ISO
ISS
GO_REF:0000107
(MGI:5284797|PMID:15620359)
GO_REF:0000024
Ensembl
RGD
BHF-UCL
PMID:15620359 GO_REF:0000024 GO_REF:0000107 MGI:5284797 NCBI chr10:56,431,586...56,444,847
Ensembl chr10:56,431,573...56,444,847
JBrowse link
G Nrxn1 neurexin 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:5284797|PMID:15620359), (MGI:5285129|PMID:21424692)
BHF-UCL
RGD
PMID:15620359 PMID:21424692 GO_REF:0000024 MGI:5284797 MGI:5285129 NCBI chr 6:13,886,757...15,191,660
Ensembl chr 6:13,886,740...15,191,660
JBrowse link
G Nrxn2 neurexin 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5285129|PMID:21424692)
GO_REF:0000107
BHF-UCL
RGD
Ensembl
PMID:21424692 GO_REF:0000024 GO_REF:0000107 MGI:5285129 NCBI chr 1:221,792,191...221,908,047
Ensembl chr 1:221,792,221...221,908,049
JBrowse link
G Reln reelin involved_in IEA
ISO
GO_REF:0000107
(MGI:5286805|PMID:21664258)
Ensembl
RGD
PMID:21664258 GO_REF:0000107 MGI:5286805 NCBI chr 4:9,347,533...9,774,257
Ensembl chr 4:9,347,528...9,773,670
JBrowse link
regulation of postsynaptic density assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi3bp ABI family member 3 binding protein involved_in IMP PMID:22485184 ARUK-UCL PMID:22485184 RGD:42721990 NCBI chr11:46,206,932...46,422,791
Ensembl chr11:46,208,075...46,369,577
JBrowse link
G Cbln1 cerebellin 1 precursor involved_in ISO (MGI:4441214|PMID:20395510) RGD PMID:20395510 MGI:4441214 NCBI chr19:20,607,507...20,611,316
Ensembl chr19:20,607,507...20,611,316
JBrowse link
G Grid2 glutamate ionotropic receptor delta type subunit 2 involved_in IEA
ISO
GO_REF:0000107
(MGI:4441214|PMID:20395510)
Ensembl
RGD
PMID:20395510 GO_REF:0000107 MGI:4441214 NCBI chr 4:94,068,112...95,476,864
Ensembl chr 4:94,696,965...95,442,778
JBrowse link
G Il1rap interleukin 1 receptor accessory protein involved_in IEA
ISO
GO_REF:0000107
(MGI:5315316|PMID:22357843)
Ensembl
RGD
PMID:22357843 GO_REF:0000107 MGI:5315316 NCBI chr11:77,456,648...77,593,208
Ensembl chr11:77,463,954...77,593,207
JBrowse link
G Lrfn1 leucine rich repeat and fibronectin type III domain containing 1 involved_in IMP
IDA
PMID:16630835 SynGO PMID:16630835, PMID:16630835 RGD:13702351, RGD:13702351 NCBI chr 1:85,290,887...85,308,498
Ensembl chr 1:85,291,462...85,300,825
JBrowse link
G Lrfn4 leucine rich repeat and fibronectin type III domain containing 4 involved_in IBA
IMP
IDA
PMID:21873635
PMID:20410109
GO_Central
SynGO
PMID:21873635, PMID:20410109, PMID:20410109 RGD:13792537, RGD:13702463, RGD:13702463 NCBI chr 1:219,850,037...219,855,771
Ensembl chr 1:219,850,037...219,853,329
JBrowse link
G Lrrc4b leucine rich repeat containing 4B involved_in IMP
IBA
IDA
PMID:19252495
PMID:21873635
SynGO
GO_Central
PMID:19252495, PMID:21873635, PMID:19252495 RGD:13702321, RGD:13792537, RGD:13702321 NCBI chr 1:100,434,418...100,468,914
Ensembl chr 1:100,447,998...100,468,868
JBrowse link
G LRRTM1 leucine rich repeat transmembrane neuronal 1 involved_in IMP
IDA
PMID:19285470 SynGO PMID:19285470, PMID:19285470 RGD:8554788, RGD:8554788 NCBI chr 4:108,300,927...108,316,373
Ensembl chr 4:108,301,129...108,316,373
JBrowse link
G Lrrtm2 leucine rich repeat transmembrane neuronal 2 involved_in IDA
IMP
PMID:19285470 SynGO PMID:19285470, PMID:19285470 RGD:8554788, RGD:8554788 NCBI chr18:28,012,877...28,017,925
Ensembl chr18:28,012,877...28,017,925
JBrowse link
G Nptx1 neuronal pentraxin 1 involved_in IDA
EXP
IMP
PMID:29024665 SynGO PMID:29024665, PMID:29024665, PMID:29024665 RGD:13702141, RGD:13702141, RGD:13702141 NCBI chr10:108,682,637...108,691,592
Ensembl chr10:108,682,638...108,691,367
JBrowse link
G Nrxn1 neurexin 1 involved_in ISO (MGI:5294741|PMID:21410790) RGD PMID:21410790 MGI:5294741 NCBI chr 6:13,886,757...15,191,660
Ensembl chr 6:13,886,740...15,191,660
JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 involved_in EXP
IDA
PMID:21262467 SynGO PMID:21262467, PMID:21262467 RGD:13702219, RGD:13702219 NCBI chr 1:139,890,537...140,262,503
Ensembl chr 1:139,890,560...140,262,503
JBrowse link
G Ptprd protein tyrosine phosphatase, receptor type, D involved_in EXP
ISO
IDA
PMID:29024665
(MGI:5315316|PMID:22357843)
RGD PMID:22357843, PMID:29024665, PMID:29024665 MGI:5315316, RGD:13702141, RGD:13702141 NCBI chr 5:92,862,229...93,514,071
Ensembl chr 5:92,862,267...93,244,202
JBrowse link
G Ptprs protein tyrosine phosphatase, receptor type, S involved_in IDA
ISO
IMP
EXP
IEA
PMID:21262467
(MGI:4887276|PMID:21262467)
GO_REF:0000107
RGD
Ensembl
PMID:21262467, PMID:21262467, PMID:21262467, PMID:21262467 GO_REF:0000107 MGI:4887276, RGD:13702219, RGD:13702219, RGD:13702219 NCBI chr 9:10,585,360...10,646,205
Ensembl chr 9:10,603,813...10,645,939
JBrowse link
G Sipa1l1 signal-induced proliferation-associated 1 like 1 involved_in IMP
IDA
PMID:11502259 SynGO PMID:11502259, PMID:11502259 RGD:8554032, RGD:8554032 NCBI chr 6:106,052,212...106,163,249
Ensembl chr 6:106,039,991...106,163,302
JBrowse link
regulation of postsynaptic density protein 95 clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdh2 cadherin 2 involved_in IEA
ISO
GO_REF:0000107
(MGI:4457945|PMID:20534458)
Ensembl
RGD
PMID:20534458 GO_REF:0000107 MGI:4457945 NCBI chr18:8,146,971...8,366,037
Ensembl chr18:8,146,971...8,360,684
JBrowse link
G Cript CXXC repeat containing interactor of PDZ3 domain involved_in IMP PMID:10570482 UniProt PMID:10570482 RGD:8554363 NCBI chr 6:10,594,147...10,602,103
Ensembl chr 6:10,594,122...10,602,085
JBrowse link
G Dbn1 drebrin 1 IMP RGD PMID:12878700 RGD:10398728 NCBI chr17:9,679,511...9,693,878
Ensembl chr17:9,679,628...9,693,820
JBrowse link
G Zmynd8 zinc finger, MYND-type containing 8 IMP RGD PMID:24117785 RGD:8554267 NCBI chr 3:162,480,766...162,594,145
Ensembl chr 3:162,480,804...162,581,610
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19599
    cellular process 18451
      cellular component organization or biogenesis 6720
        cellular component organization 6475
          organelle organization 4054
            postsynaptic specialization organization 50
              postsynaptic density organization 44
                maintenance of postsynaptic specialization structure + 16
                negative regulation of postsynaptic density organization 1
                positive regulation of postsynaptic density organization 0
                postsynaptic density assembly + 20
                postsynaptic density protein 95 clustering + 10
                regulation of postsynaptic density organization + 20
Path 2
Term Annotations click to browse term
  biological_process 19599
    cellular process 18451
      cellular component organization or biogenesis 6720
        cellular component organization 6475
          cell junction organization 795
            synapse organization 508
              postsynapse organization 220
                postsynaptic specialization organization 50
                  postsynaptic density organization 44
                    maintenance of postsynaptic specialization structure + 16
                    negative regulation of postsynaptic density organization 1
                    positive regulation of postsynaptic density organization 0
                    postsynaptic density assembly + 20
                    postsynaptic density protein 95 clustering + 10
                    regulation of postsynaptic density organization + 20
paths to the root