Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:synaptic vesicle clustering
go back to main search page
Accession:GO:0097091 term browser browse the term
Definition:The process that results in grouping synaptic vesicles in presynaptic structures.


show annotations for term's descendants           Sort by:
synaptic vesicle clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BSN bassoon presynaptic cytomatrix protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:49,554,477...49,673,130
Ensembl chr 3:49,554,477...49,671,549 		JBrowse link
G CDH2 cadherin 2 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr18:27,932,879...28,177,130
Ensembl chr18:27,932,879...28,177,946 		JBrowse link
G CTBP1 C-terminal binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:1,211,445...1,250,355
Ensembl chr 4:1,211,445...1,250,333 		JBrowse link
G CTNNB1 catenin beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:41,199,505...41,240,443
Ensembl chr 3:41,194,741...41,260,096 		JBrowse link
G NLGN1 neuroligin 1 involved_in ISS
IEA		 BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:173,395,952...174,294,372
Ensembl chr 3:173,396,284...174,294,372 		JBrowse link
G NRXN1 neurexin 1 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 2:49,918,503...51,032,132
Ensembl chr 2:49,918,503...51,225,575 		JBrowse link
G PCLO piccolo presynaptic cytomatrix protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:82,754,012...83,162,884
Ensembl chr 7:82,754,012...83,162,930 		JBrowse link
G RAB3A RAB3A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:18,196,784...18,204,042
Ensembl chr19:18,196,784...18,204,042 		JBrowse link
G SYN1 synapsin I involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:47,571,901...47,619,857
Ensembl chr  X:47,571,901...47,619,857 		JBrowse link
G SYN2 synapsin II involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:12,004,388...12,192,032
Ensembl chr 3:12,004,388...12,192,032 		JBrowse link
G SYN3 synapsin III involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:32,507,820...33,058,381
Ensembl chr22:32,507,820...33,058,381 		JBrowse link
G SYNDIG1 synapse differentiation inducing 1 involved_in ISS
IBA
IEA		 UniProt
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr20:24,469,629...24,666,616
Ensembl chr20:24,469,629...24,666,616 		JBrowse link
negative regulation of synaptic vesicle clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PTEN phosphatase and tensin homolog involved_in ISS (PMID:18082964) BHF-UCL PMID:18082964 NCBI chr10:87,863,625...87,971,930
Ensembl chr10:87,862,638...87,971,930 		JBrowse link
positive regulation of synaptic vesicle clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2L1 BCL2 like 1 involved_in ISO PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr20:31,664,452...31,723,963
Ensembl chr20:31,664,452...31,723,989 		JBrowse link
G CDH2 cadherin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:27,932,879...28,177,130
Ensembl chr18:27,932,879...28,177,946 		JBrowse link
G MAGI2 membrane associated guanylate kinase, WW and PDZ domain containing 2 involved_in ISO (MGI:4457945|PMID:20534458) BHF-UCL PMID:20534458 MGI:4457945 NCBI chr 7:78,017,055...79,453,667
Ensembl chr 7:78,017,055...79,453,667 		JBrowse link
G NLGN1 neuroligin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:173,395,952...174,294,372
Ensembl chr 3:173,396,284...174,294,372 		JBrowse link
G NLGN2 neuroligin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:7,404,653...7,419,860
Ensembl chr17:7,404,874...7,419,860 		JBrowse link
G NLGN3 neuroligin 3 involved_in ISO (MGI:5286761|PMID:21808020) CACAO PMID:21808020 MGI:5286761 NCBI chr  X:71,144,841...71,175,307
Ensembl chr  X:71,144,821...71,175,255 		JBrowse link
G PICALM phosphatidylinositol binding clathrin assembly protein ISO RGD PMID:22851330 RGD:13506174 NCBI chr11:85,957,175...86,069,860
Ensembl chr11:85,957,175...86,069,882 		JBrowse link
G SNAP91 synaptosome associated protein 91 ISO RGD PMID:22851330 RGD:13506174 NCBI chr 6:83,552,885...83,709,393
Ensembl chr 6:83,552,880...83,709,691 		JBrowse link
regulation of synaptic vesicle clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BRSK1 BR serine/threonine kinase 1 involved_in TAS (PMID:18268107) ARUK-UCL PMID:18268107 NCBI chr19:55,283,997...55,312,562
Ensembl chr19:55,282,072...55,312,562 		JBrowse link
G BRSK2 BR serine/threonine kinase 2 involved_in TAS (PMID:18268107) ARUK-UCL PMID:18268107 NCBI chr11:1,389,934...1,462,689
Ensembl chr11:1,389,899...1,462,689 		JBrowse link
G PCDH17 protocadherin 17 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23684785) Ensembl
MGI		 PMID:23684785 GO_REF:0000107 NCBI chr13:57,630,108...57,729,311
Ensembl chr13:57,631,744...57,729,311 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19669
    localization 5869
      organelle localization 694
        vesicle localization 252
          synaptic vesicle localization 69
            synaptic vesicle clustering 22
              negative regulation of synaptic vesicle clustering 1
              positive regulation of synaptic vesicle clustering 8
              regulation of synaptic vesicle clustering + 12
Path 2
Term Annotations click to browse term
  biological_process 19669
    localization 5869
      establishment of localization 5161
        transport 4818
          vesicle-mediated transport 1750
            vesicle-mediated transport in synapse 326
              synaptic vesicle cycle 272
                synaptic vesicle clustering 22
                  negative regulation of synaptic vesicle clustering 1
                  positive regulation of synaptic vesicle clustering 8
                  regulation of synaptic vesicle clustering + 12
paths to the root