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ONTOLOGY REPORT - ANNOTATIONS

Term:synaptic vesicle clustering
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Accession:GO:0097091 term browser browse the term
Definition:The process that results in grouping synaptic vesicles in presynaptic structures.


show annotations for term's descendants           Sort by:
synaptic vesicle clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bsn bassoon (presynaptic cytomatrix protein) involved_in IEA
ISO		 GO_REF:0000107
(PMID:20332206)		 Ensembl
RGD		 PMID:20332206 GO_REF:0000107 NCBI chr 8:108,784,849...108,875,819
Ensembl chr 8:108,788,542...108,875,819 		JBrowse link
G Cdh2 cadherin 2 involved_in IEA
ISO
ISS		 GO_REF:0000107
(MGI:6787578|PMID:34702855)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:34702855 GO_REF:0000024 GO_REF:0000107 MGI:6787578 NCBI chr18:7,776,704...7,990,934
Ensembl chr18:7,776,704...7,990,167 		JBrowse link
G Ctbp1 C-terminal binding protein 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:32075774)		 Ensembl
RGD		 PMID:32075774 GO_REF:0000107 NCBI chr14:77,455,580...77,482,821
Ensembl chr14:77,455,696...77,482,821 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in IEA
ISO		 GO_REF:0000107
(PMID:14622577)		 Ensembl
RGD		 PMID:14622577 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Nlgn1 neuroligin 1 involved_in IDA
IEA
ISO
IMP
ISS		 PMID:20534458
GO_REF:0000107
(MGI:2665153|PMID:12796785), (MGI:3694190|PMID:10892652)
PMID:19628693
GO_REF:0000024		 Ensembl
RGD
BHF-UCL		 PMID:10892652 PMID:12796785 PMID:20534458 PMID:19628693 GO_REF:0000024 GO_REF:0000107 MGI:2665153 MGI:3694190, RGD:10047242, RGD:8554760 NCBI chr 2:108,256,236...109,181,530
Ensembl chr 2:108,257,824...109,002,464 		JBrowse link
G Nrxn1 neurexin 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:2665153|PMID:12796785)		 BHF-UCL
RGD		 PMID:12796785 GO_REF:0000024 MGI:2665153 NCBI chr 6:3,177,788...4,323,848
Ensembl chr 6:3,177,897...4,322,710 		JBrowse link
G Pclo piccolo (presynaptic cytomatrix protein) involved_in IEA
ISO		 GO_REF:0000107
(PMID:20332206)		 Ensembl
RGD		 PMID:20332206 GO_REF:0000107 NCBI chr 4:19,691,439...20,050,015
Ensembl chr 4:19,695,315...20,049,885 		JBrowse link
G Rab3a RAB3A, member RAS oncogene family involved_in ISO
IEA		 (MGI:4830800|PMID:20338242)
GO_REF:0000107		 RGD
Ensembl		 PMID:20338242 GO_REF:0000107 MGI:4830800 NCBI chr16:18,684,185...18,688,297
Ensembl chr16:18,684,188...18,688,336 		JBrowse link
G Syn1 synapsin I involved_in ISO (MGI:76610|PMID:7568108) RGD PMID:7568108 MGI:76610 NCBI chr  X:1,172,208...1,227,400
Ensembl chr  X:1,172,208...1,227,396 		JBrowse link
G Syn2 synapsin II involved_in IEA
ISO		 GO_REF:0000107
(MGI:4830800|PMID:20338242), (PMID:18945891)		 Ensembl
RGD		 PMID:18945891 PMID:20338242 GO_REF:0000107 MGI:4830800 NCBI chr 4:148,178,846...148,347,010
Ensembl chr 4:148,186,270...148,344,192 		JBrowse link
G Syn3 synapsin III involved_in IEA
ISO		 GO_REF:0000107
(PMID:12040043)		 Ensembl
RGD		 PMID:12040043 GO_REF:0000107 NCBI chr 7:16,216,055...17,808,790
Ensembl chr 7:17,376,372...17,808,790 		JBrowse link
G Syndig1 synapse differentiation inducing 1 involved_in IDA
IBA		 PMID:20152115
GO_REF:0000033		 GO_Central PMID:20152115 GO_REF:0000033, RGD:8554654 NCBI chr 3:138,030,995...138,234,646
Ensembl chr 3:138,031,769...138,198,122 		JBrowse link
negative regulation of synaptic vesicle clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pten phosphatase and tensin homolog involved_in ISO (MGI:3629385|PMID:16675393), (MGI:3772418|PMID:18082964) RGD PMID:16675393 PMID:18082964 MGI:3629385 MGI:3772418 NCBI chr 1:230,630,443...230,697,070
Ensembl chr 1:230,630,338...230,696,838 		JBrowse link
positive regulation of synaptic vesicle clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2l1 Bcl2-like 1 involved_in IMP PMID:23792689 CAFA PMID:23792689 RGD:12793033 NCBI chr 3:141,253,508...141,304,582
Ensembl chr 3:141,253,523...141,303,479 		JBrowse link
G Cdh2 cadherin 2 involved_in IEA
ISO		 GO_REF:0000107
(MGI:4457945|PMID:20534458)		 Ensembl
RGD		 PMID:20534458 GO_REF:0000107 MGI:4457945 NCBI chr18:7,776,704...7,990,934
Ensembl chr18:7,776,704...7,990,167 		JBrowse link
G Magi2 membrane associated guanylate kinase, WW and PDZ domain containing 2 involved_in ISO (MGI:4457945|PMID:20534458) RGD PMID:20534458 MGI:4457945 NCBI chr 4:14,386,389...15,870,036
Ensembl chr 4:14,386,399...15,870,240 		JBrowse link
G Nlgn1 neuroligin 1 involved_in ISO
IEA		 (MGI:5284797|PMID:15620359)
GO_REF:0000107		 RGD
Ensembl		 PMID:15620359 GO_REF:0000107 MGI:5284797 NCBI chr 2:108,256,236...109,181,530
Ensembl chr 2:108,257,824...109,002,464 		JBrowse link
G Nlgn2 neuroligin 2 involved_in IEA
ISO		 GO_REF:0000107
(MGI:5284797|PMID:15620359)		 Ensembl
RGD		 PMID:15620359 GO_REF:0000107 MGI:5284797 NCBI chr10:54,544,461...54,557,854
Ensembl chr10:54,544,588...54,558,434 		JBrowse link
G Nlgn3 neuroligin 3 involved_in ISO (MGI:5286761|PMID:21808020) RGD PMID:21808020 MGI:5286761 NCBI chr  X:66,427,926...66,457,378
Ensembl chr  X:66,429,458...66,451,876 		JBrowse link
G Picalm phosphatidylinositol binding clathrin assembly protein IMP RGD PMID:22851330 RGD:13506174 NCBI chr 1:144,056,415...144,138,045
Ensembl chr 1:144,056,721...144,137,557 		JBrowse link
G Snap91 synaptosome associated protein 91 IMP RGD PMID:22851330 RGD:13506174 NCBI chr 8:87,738,056...87,852,690
Ensembl chr 8:87,738,824...87,852,367 		JBrowse link
regulation of synaptic vesicle clustering term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pcdh17 protocadherin 17 acts_upstream_of_or_within ISO (PMID:23684785) RGD PMID:23684785 NCBI chr15:60,222,088...60,316,172
Ensembl chr15:60,222,004...60,313,999 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20115
    localization 5684
      organelle localization 626
        vesicle localization 204
          synaptic vesicle localization 64
            synaptic vesicle clustering 20
              negative regulation of synaptic vesicle clustering 1
              positive regulation of synaptic vesicle clustering 8
              regulation of synaptic vesicle clustering + 10
Path 2
Term Annotations click to browse term
  biological_process 20115
    localization 5684
      establishment of localization 4991
        transport 4685
          vesicle-mediated transport 1639
            vesicle-mediated transport in synapse 328
              synaptic vesicle cycle 270
                synaptic vesicle clustering 20
                  negative regulation of synaptic vesicle clustering 1
                  positive regulation of synaptic vesicle clustering 8
                  regulation of synaptic vesicle clustering + 10
paths to the root