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ONTOLOGY REPORT - ANNOTATIONS


Term:perinuclear endoplasmic reticulum
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Accession:GO:0097038 term browser browse the term
Definition:The portion of endoplasmic reticulum, the intracellular network of tubules and cisternae, that occurs near the nucleus. The lumen of the perinuclear endoplasmic reticulum is contiguous with the nuclear envelope lumen (also called perinuclear space), the region between the inner and outer nuclear membranes.
Synonyms:exact_synonym: perinuclear ER


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perinuclear endoplasmic reticulum term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase ISO RGD RGD:11557982 NCBI chr12:22,472,358...22,477,052
Ensembl chr12:22,472,358...22,478,753
JBrowse link
G Adam10 ADAM metallopeptidase domain 10 ISO (PMID:23091066) RGD PMID:23091066 NCBI chr 8:77,107,355...77,237,483
Ensembl chr 8:77,107,536...77,237,483
JBrowse link
G Bcap31 B-cell receptor-associated protein 31 ISO (PMID:25854864) RGD PMID:25854864 NCBI chr  X:157,094,365...157,126,397
Ensembl chr  X:157,095,937...157,126,393
JBrowse link
G Capn2 calpain 2 ISO (PMID:14559243) RGD PMID:14559243 NCBI chr13:100,878,649...100,928,811
Ensembl chr13:100,878,650...100,928,811
JBrowse link
G Cisd2 CDGSH iron sulfur domain 2 ISO (PMID:17376863) RGD PMID:17376863 NCBI chr 2:240,586,754...240,611,560
Ensembl chr 2:240,586,754...240,611,560
JBrowse link
G Creb3l2 cAMP responsive element binding protein 3-like 2 IDA RGD PMID:23842743 RGD:13515084 NCBI chr 4:64,869,285...64,981,519
Ensembl chr 4:64,869,026...64,981,384
JBrowse link
G Cyba cytochrome b-245 alpha chain colocalizes_with IDA RGD PMID:10938010 RGD:632513 NCBI chr19:55,249,634...55,257,824
Ensembl chr19:55,249,616...55,257,876
JBrowse link
G Cybb cytochrome b-245 beta chain colocalizes_with IDA RGD PMID:10938010 RGD:632513 NCBI chr  X:14,578,330...14,610,049
Ensembl chr  X:14,578,264...14,612,547
JBrowse link
G Dbi diazepam binding inhibitor, acyl-CoA binding protein ISO (PMID:21698759) RGD PMID:21698759 NCBI chr13:36,147,667...36,156,076
Ensembl chr13:36,117,119...36,174,908
JBrowse link
G Dst dystonin ISO (MGI:3612006|PMID:16289082) RGD PMID:16289082 MGI:3612006 NCBI chr 9:37,902,336...38,296,961
Ensembl chr 9:37,902,303...38,196,273
JBrowse link
G Fyn FYN proto-oncogene, Src family tyrosine kinase IDA PMID:27525436 ARUK-UCL PMID:27525436 RGD:13601987 NCBI chr20:44,436,354...44,630,316
Ensembl chr20:44,436,403...44,630,317
JBrowse link
G Gdpd5 glycerophosphodiester phosphodiesterase domain containing 5 ISO (MGI:5619476|PMID:18667693) RGD PMID:18667693 MGI:5619476 NCBI chr 1:164,337,176...164,418,056
Ensembl chr 1:164,380,577...164,418,593
JBrowse link
G Kcnd2 potassium voltage-gated channel subfamily D member 2 IDA RGD PMID:12967630 RGD:7207200 NCBI chr 4:48,309,283...48,816,804 JBrowse link
G Kcnd3 potassium voltage-gated channel subfamily D member 3 IDA RGD PMID:12967630 RGD:7207200 NCBI chr 2:207,923,775...208,140,727
Ensembl chr 2:207,923,775...208,140,727
JBrowse link
G Nox4 NADPH oxidase 4 IDA PMID:27525436 ARUK-UCL PMID:27525436 RGD:13601987 NCBI chr 1:150,796,359...150,976,186
Ensembl chr 1:150,797,084...150,976,194
JBrowse link
G Osbp oxysterol binding protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:228,395,237...228,425,366
Ensembl chr 1:228,395,558...228,425,361
JBrowse link
G Osbp2 oxysterol binding protein 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:83,943,976...84,107,031
Ensembl chr14:83,943,977...84,106,997
JBrowse link
G Osbpl3 oxysterol binding protein-like 3 ISO
IBA
(PMID:14593528)
PMID:21873635
RGD PMID:14593528, PMID:21873635 RGD:13792537 NCBI chr 4:80,025,453...80,202,532
Ensembl chr 4:80,025,440...80,107,884
JBrowse link
G Osbpl6 oxysterol binding protein-like 6 ISO
IBA
(PMID:14593528)
PMID:21873635
RGD PMID:14593528, PMID:21873635 RGD:13792537 NCBI chr 3:63,257,646...63,455,105
Ensembl chr 3:63,353,178...63,454,967
JBrowse link
G Osbpl7 oxysterol binding protein-like 7 ISO
IBA
(PMID:14593528)
PMID:21873635
RGD PMID:14593528, PMID:21873635 RGD:13792537 NCBI chr10:84,986,330...85,003,947
Ensembl chr10:84,986,328...85,004,562
JBrowse link
G Sec23ip SEC23 interacting protein ISO (MGI:5052222|PMID:21640725) RGD PMID:21640725 MGI:5052222 NCBI chr 1:200,167,075...200,210,362
Ensembl chr 1:200,167,169...200,210,377
JBrowse link
G Syt6 synaptotagmin 6 ISO (MGI:5142391|PMID:10531344) RGD PMID:10531344 MGI:5142391 NCBI chr 2:206,064,181...206,119,034
Ensembl chr 2:206,064,179...206,127,907
JBrowse link
G Trim13 tripartite motif-containing 13 ISO (PMID:17314412), (PMID:22178386) RGD PMID:17314412, PMID:22178386 NCBI chr15:41,897,191...41,936,545
Ensembl chr15:41,927,241...41,935,718
JBrowse link
perinuclear endoplasmic reticulum lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clu clusterin ISS
ISO
IEA
GO_REF:0000024
(PMID:22689054)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:22689054 GO_REF:0000024, GO_REF:0000107 NCBI chr15:42,626,612...42,665,858
Ensembl chr15:42,640,146...42,665,857
JBrowse link
perinuclear endoplasmic reticulum membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dgat2 diacylglycerol O-acyltransferase 2 ISS
ISO
GO_REF:0000024
(PMID:27184406)
UniProt
RGD
PMID:27184406 GO_REF:0000024 NCBI chr 1:164,113,459...164,143,818
Ensembl chr 1:164,113,459...164,143,818
JBrowse link
G Mogat2 monoacylglycerol O-acyltransferase 2 ISO (PMID:27184406) RGD PMID:27184406 NCBI chr 1:164,181,762...164,205,222
Ensembl chr 1:164,181,764...164,205,222
JBrowse link
G Mogat3 monoacylglycerol O-acyltransferase 3 ISO (PMID:27184406) RGD PMID:27184406 NCBI chr12:22,708,622...22,710,787
Ensembl chr12:22,708,708...22,710,674
JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 IEA
ISO
GO_REF:0000107
(MGI:5613738|PMID:25217619)
Ensembl
RGD
PMID:25217619 GO_REF:0000107, MGI:5613738 NCBI chr 2:31,742,326...31,826,882
Ensembl chr 2:31,745,088...31,826,867
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20602
    cellular anatomical entity 20292
      perinuclear endoplasmic reticulum 28
        perinuclear endoplasmic reticulum lumen 1
        perinuclear endoplasmic reticulum membrane 4
Path 2
Term Annotations click to browse term
  cellular_component 20602
    cellular anatomical entity 20292
      intracellular anatomical structure 14638
        intracellular organelle 12405
          intracellular membrane-bounded organelle 10515
            endoplasmic reticulum 1760
              perinuclear endoplasmic reticulum 28
                perinuclear endoplasmic reticulum lumen 1
                perinuclear endoplasmic reticulum membrane 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.