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ONTOLOGY REPORT - ANNOTATIONS


Term:perinuclear endoplasmic reticulum
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Accession:GO:0097038 term browser browse the term
Definition:The portion of endoplasmic reticulum, the intracellular network of tubules and cisternae, that occurs near the nucleus. The lumen of the perinuclear endoplasmic reticulum is contiguous with the nuclear envelope lumen (also called perinuclear space), the region between the inner and outer nuclear membranes.
Synonyms:exact_synonym: perinuclear ER



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perinuclear endoplasmic reticulum term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase ISO RGD RGD:11557982 NCBI chr12:19,407,359...19,413,713
Ensembl chr12:19,407,360...19,413,651
JBrowse link
G Adam10 ADAM metallopeptidase domain 10 located_in ISO (PMID:23091066) RGD PMID:23091066 NCBI chr 8:71,346,008...71,477,889
Ensembl chr 8:71,345,837...71,477,889
JBrowse link
G Bcap31 B-cell receptor-associated protein 31 located_in ISO (PMID:25854864) RGD PMID:25854864 NCBI chr  X:151,397,567...151,429,666
Ensembl chr  X:151,397,576...151,428,506
JBrowse link
G Capn2 calpain 2 located_in ISO (PMID:14559243) RGD PMID:14559243 NCBI chr13:94,150,244...94,200,969
Ensembl chr13:94,150,240...94,200,969
JBrowse link
G Cisd2 CDGSH iron sulfur domain 2 located_in ISO (PMID:17376863) RGD PMID:17376863 NCBI chr 2:223,828,937...223,853,768
Ensembl chr 2:223,828,937...223,868,946
JBrowse link
G Creb3l2 cAMP responsive element binding protein 3-like 2 IDA RGD PMID:23842743 RGD:13515084 NCBI chr 4:65,907,570...66,112,078
Ensembl chr 4:65,907,655...66,023,763
JBrowse link
G Cyba cytochrome b-245 alpha chain colocalizes_with IDA RGD PMID:10938010 RGD:632513 NCBI chr19:50,487,598...50,495,669
Ensembl chr19:50,487,597...50,495,721
JBrowse link
G Cybb cytochrome b-245 beta chain colocalizes_with IDA RGD PMID:10938010 RGD:632513 NCBI chr  X:13,360,583...13,392,517
Ensembl chr  X:13,359,430...13,392,586
JBrowse link
G Dbi diazepam binding inhibitor, acyl-CoA binding protein located_in ISO (PMID:21698759) RGD PMID:21698759 NCBI chr13:31,241,466...31,249,853
Ensembl chr13:31,206,988...31,268,693
JBrowse link
G Dst dystonin located_in ISO (MGI:3612006|PMID:16289082) RGD PMID:16289082 MGI:3612006 NCBI chr 9:36,135,657...36,529,617
Ensembl chr 9:36,135,284...36,529,615
JBrowse link
G Fyn FYN proto-oncogene, Src family tyrosine kinase located_in IDA PMID:27525436 ARUK-UCL PMID:27525436 RGD:13601987 NCBI chr20:42,767,733...42,960,903
Ensembl chr20:42,766,369...42,959,911
JBrowse link
G Gdpd5 glycerophosphodiester phosphodiesterase domain containing 5 part_of ISO (MGI:5619476|PMID:18667693) RGD PMID:18667693 MGI:5619476 NCBI chr 1:153,679,718...153,761,452
Ensembl chr 1:153,679,718...153,761,446
JBrowse link
G Kcnd2 potassium voltage-gated channel subfamily D member 2 IDA RGD PMID:12967630 RGD:7207200 NCBI chr 4:49,775,812...50,277,746
Ensembl chr 4:49,776,246...50,277,728
JBrowse link
G Kcnd3 potassium voltage-gated channel subfamily D member 3 IDA RGD PMID:12967630 RGD:7207200 NCBI chr 2:192,937,950...193,155,345
Ensembl chr 2:192,937,950...193,155,345
JBrowse link
G Nox4 NADPH oxidase 4 located_in IDA PMID:27525436 ARUK-UCL PMID:27525436 RGD:13601987 NCBI chr 1:140,900,886...141,078,844
Ensembl chr 1:140,901,097...141,077,406
JBrowse link
G Osbp oxysterol binding protein is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:208,888,697...208,918,511
Ensembl chr 1:208,887,895...208,918,506
JBrowse link
G Osbp2 oxysterol binding protein 2 is_active_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:78,585,088...78,746,785
Ensembl chr14:78,585,089...78,746,786
JBrowse link
G Osbpl3 oxysterol binding protein-like 3 located_in
is_active_in
ISO
IBA
(PMID:14593528)
PMID:21873635
RGD PMID:14593528 PMID:21873635 RGD:13792537 NCBI chr 4:79,346,583...79,523,523
Ensembl chr 4:79,350,349...79,523,393
JBrowse link
G Osbpl6 oxysterol binding protein-like 6 located_in
is_active_in
ISO
IBA
(PMID:14593528)
PMID:21873635
RGD PMID:14593528 PMID:21873635 RGD:13792537 NCBI chr 3:61,343,776...61,541,170
Ensembl chr 3:61,343,809...61,537,102
JBrowse link
G Osbpl7 oxysterol binding protein-like 7 located_in
is_active_in
ISO
IBA
(PMID:14593528)
PMID:21873635
RGD PMID:14593528 PMID:21873635 RGD:13792537 NCBI chr10:82,035,995...82,053,566
Ensembl chr10:82,036,042...82,053,557
JBrowse link
G Sec23ip SEC23 interacting protein located_in ISO (MGI:5052222|PMID:21640725) RGD PMID:21640725 MGI:5052222 NCBI chr 1:183,320,950...183,363,944
Ensembl chr 1:183,321,075...183,363,920
JBrowse link
G Syt6 synaptotagmin 6 located_in ISO (MGI:5142391|PMID:10531344) RGD PMID:10531344 MGI:5142391 NCBI chr 2:191,093,009...191,152,283
Ensembl chr 2:191,093,007...191,149,956
JBrowse link
G Trim13 tripartite motif-containing 13 located_in ISO (PMID:17314412), (PMID:22178386) RGD PMID:17314412 PMID:22178386 NCBI chr15:35,733,548...35,772,676
Ensembl chr15:35,734,107...35,772,677
JBrowse link
perinuclear endoplasmic reticulum lumen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clu clusterin located_in ISO
IEA
ISS
(PMID:22689054)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:22689054 GO_REF:0000024 GO_REF:0000107 NCBI chr15:40,161,068...40,200,315
Ensembl chr15:40,174,617...40,200,315
JBrowse link
perinuclear endoplasmic reticulum membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dgat2 diacylglycerol O-acyltransferase 2 located_in ISO
ISS
(PMID:27184406)
GO_REF:0000024
RGD
UniProt
PMID:27184406 GO_REF:0000024 NCBI chr 1:153,454,078...153,484,432
Ensembl chr 1:153,454,080...153,484,428
JBrowse link
G Mogat2 monoacylglycerol O-acyltransferase 2 located_in ISO (PMID:27184406) RGD PMID:27184406 NCBI chr 1:153,521,813...153,545,756
Ensembl chr 1:153,521,815...153,545,756
JBrowse link
G Mogat3 monoacylglycerol O-acyltransferase 3 located_in ISO (PMID:27184406) RGD PMID:27184406 NCBI chr12:19,668,703...19,669,420
Ensembl chr12:19,668,788...19,670,754
JBrowse link
G Pik3r1 phosphoinositide-3-kinase regulatory subunit 1 located_in IEA
ISO
GO_REF:0000107
(MGI:5613738|PMID:25217619)
Ensembl
RGD
PMID:25217619 GO_REF:0000107 MGI:5613738 NCBI chr 2:32,878,942...32,963,611
Ensembl chr 2:32,882,032...32,963,631
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 19969
    cellular anatomical entity 19676
      perinuclear endoplasmic reticulum 28
        perinuclear endoplasmic reticulum lumen 1
        perinuclear endoplasmic reticulum membrane 4
Path 2
Term Annotations click to browse term
  cellular_component 19969
    cellular anatomical entity 19676
      intracellular anatomical structure 14364
        intracellular organelle 12730
          intracellular membrane-bounded organelle 11218
            endoplasmic reticulum 1772
              perinuclear endoplasmic reticulum 28
                perinuclear endoplasmic reticulum lumen 1
                perinuclear endoplasmic reticulum membrane 4
paths to the root