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ONTOLOGY REPORT - ANNOTATIONS


Term:ciliary plasm
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Accession:GO:0097014 term browser browse the term
Definition:All of the contents of a cilium, excluding the plasma membrane surrounding the cilium.
Comment:Note that we deem cilium and microtubule-based flagellum to be equivalent. Also, researchers consider the composition of both the plasm and the membrane of the cilium to be detectably different from that in the non-ciliary cytosol and plasma membrane (e.g. in terms of calcium ion concentration, membrane lipid composition, and more). For this reason, the term "ciliary plasm" is not linked to "cytoplasm".
Synonyms:exact_synonym: cilium plasm
 narrow_synonym: microtubule-based flagellar matrix;   microtubule-based flagellum matrix
 related_synonym: cilial cytoplasm;   ciliary cytoplasm;   cilium cytoplasm;   microtubule-based flagellar cytoplasm;   microtubule-based flagellum cytoplasm



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ciliary plasm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DYNC2I2 dynein 2 intermediate chain 2 is_active_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:269,002,252...269,030,978
Ensembl chr 1:268,991,410...269,030,458
JBrowse link
G NEK4 NIMA related kinase 4 ISO RGD PMID:21685204 RGD:13204813 NCBI chr13:34,844,972...34,909,028
Ensembl chr13:34,841,365...34,896,565
JBrowse link
axonemal basal plate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IFT88 intraflagellar transport 88 located_in ISO (MGI:5544506|PMID:24302887) MGI PMID:24302887 MGI:5544506 NCBI chr11:943,444...1,025,617
Ensembl chr11:943,469...1,022,953
JBrowse link
G WDPCP WD repeat containing planar cell polarity effector located_in ISO (MGI:5544506|PMID:24302887) MGI PMID:24302887 MGI:5544506 NCBI chr 3:78,435,154...78,726,313 JBrowse link
axonemal central apparatus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HYDIN HYDIN axonemal central pair apparatus protein located_in ISO (MGI:6331463|PMID:30535028) UniProt PMID:30535028 MGI:6331463 NCBI chr 6:13,895,276...14,307,790 JBrowse link
G SPAG16 sperm associated antigen 16 located_in
is_active_in
ISO
IBA
(MGI:3766863|PMID:17699735)
(PMID:21873635)
(MGI:2389554|PMID:12391165)
MGI
GO_Central
PMID:12391165 PMID:17699735 PMID:21873635 MGI:2389554 MGI:3766863 NCBI chr15:115,809,152...116,760,976
Ensembl chr15:115,809,180...116,760,790
JBrowse link
G SPAG17 sperm associated antigen 17 located_in
is_active_in
ISO
IBA
(MGI:5576118|PMID:23418344)
(PMID:21873635)
(MGI:3807761|PMID:15827353)
MGI
GO_Central
PMID:15827353 PMID:21873635 PMID:23418344 MGI:3807761 MGI:5576118 NCBI chr 4:102,596,465...102,826,213 JBrowse link
G SPEF1 sperm flagellar 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr17:31,934,856...31,938,463
Ensembl chr17:31,934,832...31,941,621
JBrowse link
axonemal central pair projection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HYDIN HYDIN axonemal central pair apparatus protein located_in ISO (MGI:3793384|PMID:18250199) MGI PMID:18250199 MGI:3793384 NCBI chr 6:13,895,276...14,307,790 JBrowse link
axonemal dynein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC65 coiled-coil domain containing 65 part_of IEA InterPro GO_REF:0000002 NCBI chr 5:14,949,864...14,958,967
Ensembl chr 5:14,950,492...14,959,328
JBrowse link
G DNAH2 dynein axonemal heavy chain 2 part_of ISO (MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:6436377 NCBI chr12:52,982,217...53,086,744 JBrowse link
G DNAH5 dynein axonemal heavy chain 5 part_of ISO (MGI:2178772|PMID:11912187) MGI PMID:11912187 MGI:2178772 NCBI chr16:3,114,267...3,366,189
Ensembl chr16:3,114,279...3,430,251
JBrowse link
G DNAH6 dynein axonemal heavy chain 6 part_of IEA InterPro GO_REF:0000002 NCBI chr 3:59,859,858...60,114,274
Ensembl chr 3:59,859,863...60,114,221
JBrowse link
G DNAH9 dynein axonemal heavy chain 9 part_of IEA InterPro GO_REF:0000002 NCBI chr12:56,045,079...56,366,327
Ensembl chr12:56,045,140...56,358,236
JBrowse link
G DNAI2 dynein axonemal intermediate chain 2 part_of ISO (PMID:11153919) MGI PMID:11153919 NCBI chr12:6,808,966...6,832,767
Ensembl chr12:6,809,299...6,832,766
JBrowse link
G DNAI3 dynein axonemal intermediate chain 3 part_of ISO (MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:6436377 NCBI chr 4:130,765,580...130,826,828
Ensembl chr 4:130,765,354...130,826,630
JBrowse link
G DNAI4 dynein axonemal intermediate chain 4 part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:145,680,135...145,754,809
Ensembl chr 6:145,680,052...145,768,488
JBrowse link
G DNAI7 dynein axonemal intermediate chain 7 part_of ISO (MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:6436377 NCBI chr 5:48,555,637...48,651,370
Ensembl chr 5:48,555,669...48,677,416
JBrowse link
G DRC1 dynein regulatory complex subunit 1 part_of IEA InterPro GO_REF:0000002 NCBI chr 3:112,581,765...112,621,664
Ensembl chr 3:112,581,770...112,621,601
JBrowse link
axonemal microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARFGEF2 ADP ribosylation factor guanine nucleotide exchange factor 2 located_in ISO PMID:15198677 UniProt PMID:15198677 RGD:1304338 NCBI chr17:50,631,844...50,732,253
Ensembl chr17:50,631,092...50,732,243
JBrowse link
G CEP162 centrosomal protein 162 located_in
is_active_in
ISO
IBA
(PMID:23644468)
(PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:23644468 NCBI chr 1:53,332,428...53,442,464
Ensembl chr 1:53,332,433...53,442,399
JBrowse link
G RPGRIP1L RPGRIP1 like ISO RGD PMID:17558407 RGD:11537356 NCBI chr 6:31,564,937...31,660,540
Ensembl chr 6:31,564,986...31,661,194
JBrowse link
G SAXO1 stabilizer of axonemal microtubules 1 located_in
is_active_in
ISO
IBA
(PMID:25673876)
(PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:25673876 NCBI chr 1:203,788,322...203,923,889
Ensembl chr 1:203,788,397...203,923,514
JBrowse link
G SAXO2 stabilizer of axonemal microtubules 2 is_active_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:50,977,040...50,999,026
Ensembl chr 7:50,977,081...50,999,164
JBrowse link
axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK8 adenylate kinase 8 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:272,497,661...272,625,668
Ensembl chr 1:272,497,662...272,625,622
JBrowse link
G AKAP14 A-kinase anchoring protein 14 located_in ISO (PMID:12475942) UniProt PMID:12475942 NCBI chr  X:98,234,469...98,255,396 JBrowse link
G AMBRA1 autophagy and beclin 1 regulator 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:15,935,354...16,119,082
Ensembl chr 2:15,917,698...16,119,082
JBrowse link
G ARL13B ADP ribosylation factor like GTPase 13B located_in
part_of
IEA
ISO
(MGI:4888042|PMID:21209331) Ensembl
CACAO
PMID:21209331 GO_REF:0000107 MGI:4888042 NCBI chr13:165,829,772...165,910,959
Ensembl chr13:165,828,059...165,911,011
JBrowse link
G ARL3 ADP ribosylation factor like GTPase 3 located_in ISO (MGI:5925653|PMID:26455799) UniProt PMID:26455799 MGI:5925653 NCBI chr14:113,668,375...113,699,583
Ensembl chr14:113,665,270...113,707,501
JBrowse link
G ATG14 autophagy related 14 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:184,701,020...184,743,752
Ensembl chr 1:184,686,142...184,743,753
JBrowse link
G ATG16L1 autophagy related 16 like 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:133,651,294...133,693,472
Ensembl chr15:133,651,286...133,706,038
JBrowse link
G ATG5 autophagy related 5 located_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 1:72,343,950...72,520,402
Ensembl chr 1:72,270,799...72,520,453
JBrowse link
G ATG7 autophagy related 7 located_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chr13:67,301,756...67,699,141
Ensembl chr13:67,417,938...67,707,660
JBrowse link
G BBS1 Bardet-Biedl syndrome 1 is_active_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:5,886,989...5,906,468 JBrowse link
G BBS5 Bardet-Biedl syndrome 5 located_in ISO (MGI:5588761|PMID:24833722) MGI PMID:24833722 MGI:5588761 NCBI chr15:75,850,860...75,874,950
Ensembl chr15:75,852,198...75,895,016
JBrowse link
G BBS7 Bardet-Biedl syndrome 7 is_active_in IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr 8:102,213,138...102,266,309 JBrowse link
G CAMSAP3 calmodulin regulated spectrin associated protein family member 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:71,531,607...71,547,413
Ensembl chr 2:71,531,607...71,547,419
JBrowse link
G CCDC113 coiled-coil domain containing 113 is_active_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:20,052,669...20,088,819
Ensembl chr 6:20,052,651...20,088,822
JBrowse link
G CCDC39 coiled-coil domain containing 39 located_in
is_active_in
IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr13:118,623,787...118,773,205
Ensembl chr13:118,626,329...118,682,283
JBrowse link
G CCDC40 coiled-coil domain containing 40 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:2,341,953...2,384,066
Ensembl chr12:2,341,957...2,384,025
JBrowse link
G CCDC65 coiled-coil domain containing 65 is_active_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:14,949,864...14,958,967
Ensembl chr 5:14,950,492...14,959,328
JBrowse link
G CCDC96 coiled-coil domain containing 96 is_active_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:3,828,389...3,831,310 JBrowse link
G CCSAP centriole, cilia and spindle associated protein located_in
is_active_in
ISO
IBA
(PMID:22493317)
(PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:22493317 NCBI chr14:60,445,052...60,465,761
Ensembl chr14:60,445,628...60,464,775
JBrowse link
G CENPF centromere protein F located_in ISO (MGI:5694347|PMID:25564561) MGI PMID:25564561 MGI:5694347 NCBI chr 9:128,948,386...129,012,241
Ensembl chr 9:128,948,497...129,012,218
JBrowse link
G CFAP206 cilia and flagella associated protein 206 is_active_in
located_in
IBA
ISO
(PMID:21873635)
(MGI:6452763|PMID:32376681)
GO_Central
UniProt
PMID:21873635 PMID:32376681 MGI:6452763 NCBI chr 1:55,821,511...55,854,203 JBrowse link
G CFAP36 cilia and flagella associated protein 36 is_active_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:85,712,377...85,742,429
Ensembl chr 3:85,709,784...85,742,436
JBrowse link
G CFAP43 cilia and flagella associated protein 43 located_in
is_active_in
IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr14:115,073,529...115,201,965
Ensembl chr14:115,073,529...115,174,043
JBrowse link
G CFAP45 cilia and flagella associated protein 45 located_in IDA
IEA
(PMID:33139725) GO_Central
Ensembl
PMID:33139725 GO_REF:0000107 NCBI chr 4:90,593,864...90,626,660
Ensembl chr 4:90,593,858...90,627,809
JBrowse link
G CFAP52 cilia and flagella associated protein 52 located_in IDA (PMID:33139725) GO_Central PMID:33139725 NCBI chr12:54,544,699...54,581,778
Ensembl chr12:54,544,730...54,581,742
JBrowse link
G CFAP53 cilia and flagella associated protein 53 located_in ISO (MGI:6503922|PMID:33347437) MGI PMID:33347437 MGI:6503922 NCBI chr 1:99,848,184...99,900,001 JBrowse link
G CFAP70 cilia and flagella associated protein 70 located_in ISO (MGI:6383288|PMID:30158508) UniProt PMID:30158508 MGI:6383288 NCBI chr14:76,075,269...76,199,898
Ensembl chr14:76,075,269...76,198,778
JBrowse link
G CTSH cathepsin H ISO RGD PMID:12838426 RGD:5686399 NCBI chr 7:48,084,882...48,106,072
Ensembl chr 7:48,083,569...48,106,041
JBrowse link
G CYS1 cystin 1 located_in ISO (MGI:4461844|PMID:19850956)
(MGI:2158985|PMID:11854326), (MGI:4461844|PMID:19850956)
MGI PMID:11854326 PMID:19850956 MGI:2158985 MGI:4461844 NCBI chr 3:126,398,302...126,411,951 JBrowse link
G DCDC2 doublecortin domain containing 2 located_in
is_active_in
ISO
IBA
(PMID:25557784), (PMID:27319779)
(PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:25557784 PMID:27319779 NCBI chr 7:19,044,229...19,219,055
Ensembl chr 7:19,048,088...19,219,075
JBrowse link
G DCLK2 doublecortin like kinase 2 is_active_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:78,680,241...78,854,909
Ensembl chr 8:78,681,415...78,854,848
JBrowse link
G DCX doublecortin is_active_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:91,317,671...91,644,572
Ensembl chr  X:91,323,768...91,644,567
JBrowse link
G DNAAF1 dynein axonemal assembly factor 1 located_in
is_active_in
ISO
IBA
(PMID:18385425)
(PMID:21873635)
UniProt
GO_Central
PMID:18385425 PMID:21873635 NCBI chr 6:4,457,283...4,483,641
Ensembl chr 6:4,457,291...4,479,828
JBrowse link
G DNAH1 dynein axonemal heavy chain 1 located_in ISO (PMID:24360805) UniProt PMID:24360805 NCBI chr13:34,455,154...34,544,147
Ensembl chr13:34,445,336...34,544,149
JBrowse link
G DNAH10 dynein axonemal heavy chain 10 is_active_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:29,095,480...29,250,255
Ensembl chr14:29,095,486...29,249,864
JBrowse link
G DNAH11 dynein axonemal heavy chain 11 located_in
is_active_in
IDA
IBA
(PMID:33139725)
(PMID:21873635)
GO_Central PMID:21873635 PMID:33139725 NCBI chr 9:90,420,044...90,768,327
Ensembl chr 9:90,423,077...90,767,487
JBrowse link
G DNAH17 dynein axonemal heavy chain 17 located_in
is_active_in
ISO
IBA
(PMID:31178125)
(PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:31178125 NCBI chr12:3,485,166...3,590,325
Ensembl chr12:3,473,087...3,590,318
JBrowse link
G DNAH2 dynein axonemal heavy chain 2 located_in
is_active_in
ISO
IBA
(PMID:31178125)
(PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:31178125 NCBI chr12:52,982,217...53,086,744 JBrowse link
G DNAH5 dynein axonemal heavy chain 5 located_in ISO (PMID:15750039), (PMID:16492982), (PMID:18950741), (PMID:23849778), (PMID:24203976), (PMID:26387594), (PMID:26909801), (PMID:29916806), (PMID:31178125)
(MGI:5551687|PMID:23849778), (MGI:5607335|PMID:25192045), (MGI:6284218|PMID:29916806), (MGI:6503922|PMID:33347437)
SYSCILIA_CCNET
MGI
PMID:15750039 PMID:16492982 PMID:18950741 PMID:23849778 PMID:24203976 More... MGI:5551687 MGI:5607335 MGI:6284218 MGI:6503922 NCBI chr16:3,114,267...3,366,189
Ensembl chr16:3,114,279...3,430,251
JBrowse link
G DNAH8 dynein axonemal heavy chain 8 located_in ISO (PMID:31178125)
(PMID:32619401)
UniProt PMID:31178125 PMID:32619401 NCBI chr 7:34,197,185...34,479,640 JBrowse link
G DNAH9 dynein axonemal heavy chain 9 located_in
is_active_in
ISO
IBA
(PMID:11104725), (PMID:11839535), (PMID:15750039), (PMID:18950741), (PMID:23849778), (PMID:31178125)
(PMID:21873635)
SYSCILIA_CCNET
GO_Central
PMID:11104725 PMID:11839535 PMID:15750039 PMID:18950741 PMID:21873635 More... NCBI chr12:56,045,079...56,366,327
Ensembl chr12:56,045,140...56,358,236
JBrowse link
G DNAI2 dynein axonemal intermediate chain 2 located_in ISO (MGI:6284218|PMID:29916806)
(PMID:18950741), (PMID:23849778)
(PMID:11153919)
MGI
SYSCILIA_CCNET
PMID:11153919 PMID:18950741 PMID:23849778 PMID:29916806 MGI:6284218 NCBI chr12:6,808,966...6,832,767
Ensembl chr12:6,809,299...6,832,766
JBrowse link
G DNAI4 dynein axonemal intermediate chain 4 located_in ISO (MGI:6436377|PMID:30060180) UniProt PMID:30060180 MGI:6436377 NCBI chr 6:145,680,135...145,754,809
Ensembl chr 6:145,680,052...145,768,488
JBrowse link
G DNAI7 dynein axonemal intermediate chain 7 is_active_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:48,555,637...48,651,370
Ensembl chr 5:48,555,669...48,677,416
JBrowse link
G DNAJB13 DnaJ heat shock protein family (Hsp40) member B13 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:8,342,207...8,358,617
Ensembl chr 9:8,342,476...8,355,406
JBrowse link
G DNALI1 dynein axonemal light intermediate chain 1 located_in
is_active_in
ISO
IBA
(MGI:3628860|PMID:16496424), (MGI:6284218|PMID:29916806)
(PMID:23849778), (PMID:26909801), (PMID:31178125)
(PMID:21873635)
MGI
UniProt
GO_Central
PMID:16496424 PMID:21873635 PMID:23849778 PMID:26909801 PMID:29916806 More... MGI:3628860 MGI:6284218 NCBI chr 6:93,612,263...93,621,486
Ensembl chr 6:93,612,929...93,622,081
JBrowse link
G DRC1 dynein regulatory complex subunit 1 is_active_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:112,581,765...112,621,664
Ensembl chr 3:112,581,770...112,621,601
JBrowse link
G DRC3 dynein regulatory complex subunit 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:60,633,166...60,651,821
Ensembl chr12:60,633,170...60,651,681
JBrowse link
G DYNC2H1 dynein cytoplasmic 2 heavy chain 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:33,720,920...34,039,954
Ensembl chr 9:33,720,877...34,039,950
JBrowse link
G DYNC2I2 dynein 2 intermediate chain 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:269,002,252...269,030,978
Ensembl chr 1:268,991,410...269,030,458
JBrowse link
G DYNC2LI1 dynein cytoplasmic 2 light intermediate chain 1 located_in
is_active_in
IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 3:96,656,099...96,703,282
Ensembl chr 3:96,655,098...96,703,318
JBrowse link
G DYNLT4 dynein light chain Tctex-type 4 located_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 6:166,527,350...166,528,855
Ensembl chr 6:166,527,350...166,528,850
JBrowse link
G DZIP1L DAZ interacting zinc finger protein 1 like located_in IEA Ensembl GO_REF:0000107 NCBI chr13:78,861,007...78,916,633
Ensembl chr13:78,861,024...78,916,112
JBrowse link
G EFHC1 EF-hand domain containing 1 located_in
is_active_in
ISO
IBA
(MGI:3529636|PMID:15670853)
(PMID:21873635)
UniProt
GO_Central
PMID:15670853 PMID:21873635 MGI:3529636 NCBI chr 7:46,244,915...46,320,261
Ensembl chr 7:46,239,230...46,320,256
JBrowse link
G EFHC2 EF-hand domain containing 2 is_active_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:39,407,390...39,597,537
Ensembl chr  X:39,403,501...39,597,513
JBrowse link
G GABARAP GABA type A receptor-associated protein located_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chr12:52,596,130...52,598,166
Ensembl chr12:52,597,083...52,598,194
JBrowse link
G GAS8 growth arrest specific 8 located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:86,817...105,987
Ensembl chr 6:64,714...105,993
JBrowse link
G GLI1 GLI family zinc finger 1 located_in
part_of
IEA
ISO
(MGI:3692156|PMID:16254602) Ensembl
CACAO
PMID:16254602 GO_REF:0000107 MGI:3692156 NCBI chr 5:22,736,325...22,747,421
Ensembl chr 5:22,732,516...22,747,421
JBrowse link
G GLI2 GLI family zinc finger 2 located_in
part_of
IEA
ISO
(MGI:4888042|PMID:21209331) Ensembl
CACAO
PMID:21209331 GO_REF:0000107 MGI:4888042 NCBI chr15:30,312,528...30,580,272
Ensembl chr15:30,313,817...30,579,306
JBrowse link
G GLI3 GLI family zinc finger 3 located_in
part_of
IEA
ISO
(MGI:4888042|PMID:21209331) Ensembl
CACAO
PMID:21209331 GO_REF:0000107 MGI:4888042 NCBI chr18:52,403,463...52,697,906
Ensembl chr18:52,404,071...52,697,903
JBrowse link
G GNAT3 G protein subunit alpha transducin 3 ISO RGD PMID:17021831 RGD:2302145 NCBI chr 9:99,848,406...99,910,236
Ensembl chr 9:99,859,832...99,911,761
JBrowse link
G IFT140 intraflagellar transport 140 located_in
is_active_in
ISO
IBA
(MGI:4460838|PMID:20368623), (MGI:5553228|PMID:23418020)
(PMID:21873635)
UniProt
GO_Central
PMID:20368623 PMID:21873635 PMID:23418020 MGI:4460838 MGI:5553228 NCBI chr 3:40,309,298...40,372,139
Ensembl chr 3:40,309,651...40,372,136
JBrowse link
G IFT172 intraflagellar transport 172 is_active_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:111,683,674...111,718,504
Ensembl chr 3:111,683,669...111,718,971
JBrowse link
G IFT57 intraflagellar transport 57 located_in
part_of
IEA
ISO
(MGI:4888042|PMID:21209331) Ensembl
CACAO
PMID:21209331 GO_REF:0000107 MGI:4888042 NCBI chr13:151,298,552...151,356,715
Ensembl chr13:151,298,554...151,357,157
JBrowse link
G IFT88 intraflagellar transport 88 located_in ISO (MGI:2158985|PMID:11854326), (MGI:2664063|PMID:11251073), (MGI:3773480|PMID:18066062), (MGI:4460838|PMID:20368623), (MGI:5544506|PMID:24302887) MGI PMID:11251073 PMID:11854326 PMID:18066062 PMID:20368623 PMID:24302887 MGI:2158985 MGI:2664063 MGI:3773480 MGI:4460838 MGI:5544506 NCBI chr11:943,444...1,025,617
Ensembl chr11:943,469...1,022,953
JBrowse link
G INPP5E inositol polyphosphate-5-phosphatase E located_in IEA Ensembl GO_REF:0000107
G KIF17 kinesin family member 17 located_in IEA Ensembl GO_REF:0000107 Ensembl chr 6:78,897,872...78,953,024 JBrowse link
G KIF19 kinesin family member 19 located_in IEA GOC GO_REF:0000108 NCBI chr12:6,775,695...6,803,066
Ensembl chr12:6,775,714...6,803,037
JBrowse link
G KIF3A kinesin family member 3A ISO RGD PMID:9920666 RGD:1581597 NCBI chr 2:134,932,339...135,069,408
Ensembl chr 2:134,932,615...135,069,351
JBrowse link
G KIFAP3 kinesin associated protein 3 located_in
is_active_in
ISO
IBA
(MGI:4353477|PMID:19384852)
(PMID:21873635)
MGI
GO_Central
PMID:19384852 PMID:21873635 MGI:4353477 NCBI chr 4:80,922,032...81,105,135
Ensembl chr 4:80,922,013...81,108,408
JBrowse link
G LCA5 lebercilin LCA5 located_in
is_active_in
ISO
IBA
(MGI:5588761|PMID:24833722)
(PMID:21873635)
MGI
GO_Central
PMID:21873635 PMID:24833722 MGI:5588761 NCBI chr 1:86,596,967...86,685,073
Ensembl chr 1:86,516,306...86,685,614
JBrowse link
G LCA5L lebercilin LCA5 like is_active_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:202,988,483...203,045,199
Ensembl chr13:202,988,735...203,030,451
JBrowse link
G MAK male germ cell associated kinase located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:7,482,089...7,538,373
Ensembl chr 7:7,481,682...7,538,282
JBrowse link
G MAP1LC3B microtubule associated protein 1 light chain 3 beta located_in ISO (MGI:5527012|PMID:24089209) UniProt PMID:24089209 MGI:5527012 NCBI chr 6:1,919,879...1,941,069
Ensembl chr 6:1,915,387...1,941,077
JBrowse link
G MAP4 microtubule associated protein 4 located_in ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chr13:30,633,049...30,805,183
Ensembl chr13:30,631,924...30,804,774
JBrowse link
G MAPK15 mitogen-activated protein kinase 15 NOT|located_in ISO (PMID:29021280) UniProt PMID:29021280 NCBI chr 4:909,266...915,537
Ensembl chr 4:902,439...915,475
JBrowse link
G MAPT microtubule associated protein tau located_in ISO (MGI:3821640|PMID:19004860) MGI PMID:19004860 MGI:3821640 NCBI chr12:17,098,259...17,211,483
Ensembl chr12:17,095,587...17,211,368
JBrowse link
G MNS1 meiosis specific nuclear structural 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:115,471,904...115,526,344
Ensembl chr 1:115,471,922...115,553,524
JBrowse link
G NME8 NME/NM23 family member 8 part_of ISO (MGI:2680785|PMID:12909633) ARUK-UCL PMID:12909633 MGI:2680785 NCBI chr 9:108,358,289...108,393,755
Ensembl chr 9:108,357,328...108,393,766
JBrowse link
G ODAD1 outer dynein arm docking complex subunit 1 located_in
is_active_in
ISO
IBA
(PMID:25192045)
(PMID:21873635)
SYSCILIA_CCNET
GO_Central
PMID:21873635 PMID:25192045 NCBI chr 6:53,729,915...53,754,508 JBrowse link
G ODAD2 outer dynein arm docking complex subunit 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:39,276,423...39,463,096
Ensembl chr10:39,276,511...39,462,872
JBrowse link
G ODAD3 outer dynein arm docking complex subunit 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:70,088,119...70,097,027
Ensembl chr 2:70,073,067...70,096,924
JBrowse link
G ODAD4 outer dynein arm docking complex subunit 4 located_in ISO (PMID:27486780)
(MGI:6503922|PMID:33347437)
GO_Central
MGI
PMID:27486780 PMID:33347437 MGI:6503922 NCBI chr12:20,766,088...20,791,527
Ensembl chr12:20,766,858...20,791,573
JBrowse link
G PIK3R4 phosphoinositide-3-kinase regulatory subunit 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr13:1,730,988...1,815,555
Ensembl chr13:1,731,017...1,815,556
JBrowse link
G PRKACA protein kinase cAMP-activated catalytic subunit alpha colocalizes_with
located_in
ISO
IEA
(PMID:12475942) UniProtKB
Ensembl
PMID:12475942 GO_REF:0000107 NCBI chr 2:65,074,876...65,095,564
Ensembl chr 2:65,074,870...65,095,553
JBrowse link
G PRKAR1A protein kinase cAMP-dependent type I regulatory subunit alpha colocalizes_with
located_in
ISO
IEA
(PMID:12475942) UniProtKB
Ensembl
PMID:12475942 GO_REF:0000107 NCBI chr12:11,662,344...11,681,490
Ensembl chr12:11,662,347...11,681,202
JBrowse link
G PRKAR2A protein kinase cAMP-dependent type II regulatory subunit alpha colocalizes_with
located_in
ISO
IEA
(PMID:12475942) UniProtKB
Ensembl
PMID:12475942 GO_REF:0000107 NCBI chr13:31,427,786...31,517,005
Ensembl chr13:31,426,213...31,517,122
JBrowse link
G RP1 RP1 axonemal microtubule associated located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:76,724,604...76,730,264
Ensembl chr 4:76,724,604...76,734,610
JBrowse link
G RP1L1 RP1 like 1 located_in ISO (MGI:4353917|PMID:19657028) UniProt PMID:19657028 MGI:4353917 NCBI chr14:13,790,287...13,841,230 JBrowse link
G RPGRIP1 RPGR interacting protein 1 located_in ISO (MGI:1933524|PMID:11104772) MGI PMID:11104772 MGI:1933524 NCBI chr 7:77,813,964...77,903,973
Ensembl chr 7:77,814,708...77,903,928
JBrowse link
G RPGRIP1L RPGRIP1 like located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:31,564,937...31,660,540
Ensembl chr 6:31,564,986...31,661,194
JBrowse link
G RSPH4A radial spoke head component 4A located_in
is_active_in
ISO
IBA
(PMID:23255504)
(PMID:21873635)
SYSCILIA_CCNET
GO_Central
PMID:21873635 PMID:23255504 NCBI chr 1:44,964,433...45,004,925
Ensembl chr 1:44,963,879...44,985,205
JBrowse link
G RSPH6A radial spoke head 6 homolog A located_in
is_active_in
ISO
IBA
(MGI:6279049|PMID:30239614)
(PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:30239614 MGI:6279049 NCBI chr 6:52,118,695...52,139,183
Ensembl chr 6:52,118,429...52,140,478
JBrowse link
G RSPH9 radial spoke head component 9 located_in
is_active_in
ISO
IBA
(PMID:26909801)
(PMID:21873635)
(MGI:6451324|PMID:30383886)
GO_Central
GO_Central
UniProt
PMID:21873635 PMID:26909801 PMID:30383886 MGI:6451324 NCBI chr 7:38,624,942...38,641,410
Ensembl chr 7:38,625,787...38,641,410
JBrowse link
G SEPTIN2 septin 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:140,023,836...140,058,291
Ensembl chr15:140,023,822...140,058,288
JBrowse link
G SEPTIN7 septin 7 located_in ISO (PMID:23572511) GO_Central PMID:23572511 NCBI chr18:38,082,626...38,183,354
Ensembl chr18:38,068,303...38,284,645
JBrowse link
G SEPTIN9 septin 9 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:4,254,771...4,347,526
Ensembl chr12:4,254,775...4,405,628
JBrowse link
G SPAG16 sperm associated antigen 16 located_in ISO (MGI:3052627|PMID:15328412), (MGI:3619868|PMID:16382026), (MGI:3844768|PMID:19305393) MGI PMID:15328412 PMID:16382026 PMID:19305393 MGI:3052627 MGI:3619868 MGI:3844768 NCBI chr15:115,809,152...116,760,976
Ensembl chr15:115,809,180...116,760,790
JBrowse link
G SPAG6 sperm associated antigen 6 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:52,496,457...52,571,977
Ensembl chr10:52,494,755...52,572,010
JBrowse link
G SPATA7 spermatogenesis associated 7 located_in
is_active_in
ISO
IBA
(PMID:25398945)
(PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:25398945 NCBI chr 7:110,309,414...110,368,370
Ensembl chr 7:110,309,435...110,364,033
JBrowse link
G TMEM67 transmembrane protein 67 colocalizes_with ISO RGD PMID:23516626 RGD:11535084 NCBI chr 4:42,878,249...42,931,106
Ensembl chr 4:42,878,254...42,931,121
JBrowse link
G TOGARAM1 TOG array regulator of axonemal microtubules 1 located_in ISO (PMID:32453716) UniProt PMID:32453716 NCBI chr 1:175,198,172...175,274,309
Ensembl chr 1:175,198,385...175,275,184
JBrowse link
G TRAF3IP1 TRAF3 interacting protein 1 located_in
is_active_in
ISO
IBA
(MGI:5298450|PMID:21945076)
(PMID:21873635)
MGI
GO_Central
PMID:21873635 PMID:21945076 MGI:5298450 NCBI chr15:137,863,612...137,912,325
Ensembl chr15:137,863,609...137,912,477
JBrowse link
G TTLL10 tubulin tyrosine ligase like 10 located_in ISO (MGI:3850271|PMID:19524510) UniProt PMID:19524510 MGI:3850271 NCBI chr 6:63,494,759...63,513,884
Ensembl chr 6:63,494,699...63,511,636
JBrowse link
G TTLL3 tubulin tyrosine ligase like 3 located_in ISO (MGI:3850271|PMID:19524510), (MGI:6501614|PMID:33414192) UniProt PMID:19524510 PMID:33414192 MGI:3850271 MGI:6501614 NCBI chr13:66,094,069...66,123,984 JBrowse link
G TTLL8 tubulin tyrosine ligase like 8 located_in ISO (MGI:3850271|PMID:19524510), (MGI:6501614|PMID:33414192) UniProt PMID:19524510 PMID:33414192 MGI:3850271 MGI:6501614 NCBI chr 5:594,614...645,705
Ensembl chr 5:594,221...647,897
JBrowse link
G TUBB4A tubulin beta 4A class IVa located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:72,599,244...72,605,362
Ensembl chr 2:72,599,706...72,619,450
JBrowse link
G TULP3 TUB like protein 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:67,201,680...67,238,348
Ensembl chr 5:67,199,446...67,238,324
JBrowse link
G WDR11 WD repeat domain 11 located_in ISO (MGI:6116377|PMID:29263200) UniProt PMID:29263200 MGI:6116377 NCBI chr14:130,618,924...130,674,536
Ensembl chr14:130,511,592...130,674,541
JBrowse link
G WDR35 WD repeat domain 35 is_active_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:118,273,113...118,279,659
Ensembl chr 3:118,209,099...118,279,041
JBrowse link
G WDR35 WD repeat domain 35 located_in
is_active_in
ISO
IBA
(MGI:4950635|PMID:21473986)
(PMID:21873635)
UniProt
GO_Central
PMID:21473986 PMID:21873635 MGI:4950635 NCBI chr 3:118,209,112...118,279,050
Ensembl chr 3:118,209,099...118,279,041
JBrowse link
distal portion of axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNAH9 dynein axonemal heavy chain 9 located_in IEA Ensembl GO_REF:0000107 NCBI chr12:56,045,079...56,366,327
Ensembl chr12:56,045,140...56,358,236
JBrowse link
inner dynein arm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNAH1 dynein axonemal heavy chain 1 part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:34,455,154...34,544,147
Ensembl chr13:34,445,336...34,544,149
JBrowse link
G DNAH12 dynein axonemal heavy chain 12 part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:39,148,160...39,395,266
Ensembl chr13:39,148,373...39,395,300
JBrowse link
G DNAH2 dynein axonemal heavy chain 2 part_of ISO (PMID:30811583) UniProt PMID:30811583 NCBI chr12:52,982,217...53,086,744 JBrowse link
G DNAH7 dynein axonemal heavy chain 7 part_of IEA Ensembl GO_REF:0000107 NCBI chr15:99,722,278...99,987,348
Ensembl chr15:99,724,828...99,987,004
JBrowse link
G DNAI3 dynein axonemal intermediate chain 3 part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:130,765,580...130,826,828
Ensembl chr 4:130,765,354...130,826,630
JBrowse link
outer dynein arm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC103 coiled-coil domain containing 103 part_of IEA InterPro GO_REF:0000002 NCBI chr12:18,469,705...18,474,316 JBrowse link
G CFAP70 cilia and flagella associated protein 70 part_of IEA Ensembl GO_REF:0000107 NCBI chr14:76,075,269...76,199,898
Ensembl chr14:76,075,269...76,198,778
JBrowse link
G DNAH17 dynein axonemal heavy chain 17 part_of IEA Ensembl GO_REF:0000107 NCBI chr12:3,485,166...3,590,325
Ensembl chr12:3,473,087...3,590,318
JBrowse link
G DNAH5 dynein axonemal heavy chain 5 part_of IEA Ensembl GO_REF:0000107 NCBI chr16:3,114,267...3,366,189
Ensembl chr16:3,114,279...3,430,251
JBrowse link
G DNAH9 dynein axonemal heavy chain 9 part_of IEA Ensembl GO_REF:0000107 NCBI chr12:56,045,079...56,366,327
Ensembl chr12:56,045,140...56,358,236
JBrowse link
G DNAI1 dynein axonemal intermediate chain 1 part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:32,275,173...32,355,444
Ensembl chr10:32,275,175...32,355,399
JBrowse link
G DNAI2 dynein axonemal intermediate chain 2 part_of IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:6,808,966...6,832,767
Ensembl chr12:6,809,299...6,832,766
JBrowse link
G DYNC1I2 dynein cytoplasmic 1 intermediate chain 2 part_of ISO (MGI:6147712|PMID:27353389) MGI PMID:27353389 MGI:6147712 NCBI chr15:77,803,601...77,859,559
Ensembl chr15:77,803,349...77,859,622
JBrowse link
G NME8 NME/NM23 family member 8 part_of IEA Ensembl GO_REF:0000107 NCBI chr 9:108,358,289...108,393,755
Ensembl chr 9:108,357,328...108,393,766
JBrowse link
G ODAD1 outer dynein arm docking complex subunit 1 part_of ISO (PMID:23261303) UniProt PMID:23261303 NCBI chr 6:53,729,915...53,754,508 JBrowse link
outer dynein arm docking complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ODAD4 outer dynein arm docking complex subunit 4 part_of IEA Ensembl GO_REF:0000107 NCBI chr12:20,766,088...20,791,527
Ensembl chr12:20,766,858...20,791,573
JBrowse link
proximal portion of axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNAH11 dynein axonemal heavy chain 11 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:90,420,044...90,768,327
Ensembl chr 9:90,423,077...90,767,487
JBrowse link
radial spoke term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RSPH4A radial spoke head component 4A part_of IEA InterPro GO_REF:0000002 NCBI chr 1:44,964,433...45,004,925
Ensembl chr 1:44,963,879...44,985,205
JBrowse link
G RSPH6A radial spoke head 6 homolog A part_of IEA InterPro GO_REF:0000002 NCBI chr 6:52,118,695...52,139,183
Ensembl chr 6:52,118,429...52,140,478
JBrowse link
G RSPH9 radial spoke head component 9 part_of IEA InterPro GO_REF:0000002 NCBI chr 7:38,624,942...38,641,410
Ensembl chr 7:38,625,787...38,641,410
JBrowse link
radial spoke head term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RSPH4A radial spoke head component 4A part_of ISO (MGI:5882054|PMID:26506310) MGI PMID:26506310 MGI:5882054 NCBI chr 1:44,964,433...45,004,925
Ensembl chr 1:44,963,879...44,985,205
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 17057
    cellular anatomical entity 16926
      organelle 11616
        membrane-bounded organelle 10689
          cilium 672
            ciliary plasm 127
              axoneme + 126
Path 2
Term Annotations click to browse term
  cellular_component 17057
    cellular anatomical entity 16926
      intracellular anatomical structure 12696
        cytoplasm 9935
          cytoplasmic region 255
            plasma membrane bounded cell projection cytoplasm 214
              ciliary plasm 127
                axoneme + 126
paths to the root