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ONTOLOGY REPORT - ANNOTATIONS


Term:ciliary plasm
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Accession:GO:0097014 term browser browse the term
Definition:All of the contents of a cilium, excluding the plasma membrane surrounding the cilium.
Comment:Note that we deem cilium and microtubule-based flagellum to be equivalent. Also, researchers consider the composition of both the plasm and the membrane of the cilium to be detectably different from that in the non-ciliary cytosol and plasma membrane (e.g. in terms of calcium ion concentration, membrane lipid composition, and more). For this reason, the term "ciliary plasm" is not linked to "cytoplasm".
Synonyms:exact_synonym: cilium plasm
 narrow_synonym: microtubule-based flagellar matrix;   microtubule-based flagellum matrix
 related_synonym: cilial cytoplasm;   ciliary cytoplasm;   cilium cytoplasm;   microtubule-based flagellar cytoplasm;   microtubule-based flagellum cytoplasm


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ciliary plasm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dync2i1 dynein 2 intermediate chain 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:144,069,077...144,124,975
Ensembl chr 6:144,069,022...144,123,729
JBrowse link
G Dync2i2 dynein 2 intermediate chain 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:8,599,251...8,615,329
Ensembl chr 3:8,599,148...8,615,532
JBrowse link
G Nek4 NIMA-related kinase 4 IDA RGD PMID:21685204 RGD:13204813 NCBI chr16:7,035,002...7,080,272
Ensembl chr16:7,035,068...7,075,554
JBrowse link
A axonemal microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfap206 cilia and flagella associated protein 206 colocalizes_with ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:50,148,685...50,193,580
Ensembl chr 5:50,148,658...50,193,571
JBrowse link
axonemal basal plate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ift88 intraflagellar transport 88 ISO (MGI:MGI:5544506|PMID:24302887) RGD PMID:24302887 MGI:MGI:5544506 NCBI chr15:37,690,417...37,786,855
Ensembl chr15:37,691,345...37,784,924
JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector ISO
IEA
(MGI:MGI:5544506|PMID:24302887)
GO_REF:0000107
RGD
Ensembl
PMID:24302887 GO_REF:0000107, MGI:MGI:5544506 NCBI chr14:106,393,959...106,759,511
Ensembl chr14:106,393,959...106,759,505
JBrowse link
axonemal central apparatus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hydin Hydin, axonemal central pair apparatus protein ISO (MGI:MGI:6331463|PMID:30535028) RGD PMID:30535028 MGI:MGI:6331463 NCBI chr19:41,036,507...41,379,634
Ensembl chr19:41,036,510...41,379,588
JBrowse link
G LOC102550841 uncharacterized LOC102550841 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:76,913,521...77,007,087
Ensembl chr 9:76,913,639...77,006,527
JBrowse link
G Spag16 sperm associated antigen 16 ISO
IBA
MGI:MGI:3606979 (MGI:MGI:2389554|PMID:12391165), (MGI:MGI:3766863|PMID:17699735)
PMID:21873635
RGD PMID:12391165, PMID:17699735, PMID:21873635 MGI:MGI:2389554, MGI:MGI:3766863, RGD:13792537 NCBI chr 9:77,027,626...77,833,476
Ensembl chr 9:77,320,726...77,833,281
JBrowse link
G Spag17 sperm associated antigen 17 ISO
IBA
MGI:MGI:4364991 (MGI:MGI:3807761|PMID:15827353), (MGI:MGI:5576118|PMID:23418344)
PMID:21873635
RGD PMID:15827353, PMID:23418344, PMID:21873635 MGI:MGI:3807761, MGI:MGI:5576118, RGD:13792537 NCBI chr 2:202,159,659...202,452,361
Ensembl chr 2:202,200,797...202,443,026
JBrowse link
G Spag6l sperm associated antigen 6-like ISO MGI:MGI:1913972 (MGI:MGI:3766863|PMID:17699735) RGD PMID:17699735 MGI:MGI:3766863 NCBI chr11:88,424,493...88,517,910
Ensembl chr11:88,424,414...88,508,601
JBrowse link
G Spef1 sperm flagellar 1 ISO (MGI:MGI:6331463|PMID:30535028) RGD PMID:30535028 MGI:MGI:6331463 NCBI chr 3:123,712,907...123,720,787
Ensembl chr 3:123,714,564...123,718,432
JBrowse link
axonemal central pair projection term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hydin Hydin, axonemal central pair apparatus protein ISO MGI:MGI:1856913 (MGI:MGI:3793384|PMID:18250199) RGD PMID:18250199 MGI:MGI:3793384 NCBI chr19:41,036,507...41,379,634
Ensembl chr19:41,036,510...41,379,588
JBrowse link
axonemal dynein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc65 coiled-coil domain containing 65 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:140,383,395...140,397,186
Ensembl chr 7:140,383,397...140,397,179
JBrowse link
G Cfap94 cilia and flagella associated protein 94 ISO (MGI:MGI:6436377|PMID:30060180) RGD PMID:30060180 MGI:MGI:6436377 NCBI chr 4:179,440,984...179,476,965
Ensembl chr 4:179,440,953...179,477,070
JBrowse link
G Dnah1 dynein, axonemal, heavy chain 1 IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr16:7,345,131...7,407,009
Ensembl chr16:7,345,978...7,408,265
JBrowse link
G Dnah12 dynein, axonemal, heavy chain 12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:2,377,218...2,534,130
Ensembl chr16:2,379,480...2,534,131
JBrowse link
G Dnah5 dynein, axonemal, heavy chain 5 ISO MGI:MGI:2180081 (MGI:MGI:2178772|PMID:11912187) RGD PMID:11912187 MGI:MGI:2178772 NCBI chr 2:80,947,730...81,143,997
NCBI chr 2:81,159,060...81,337,560
Ensembl chr 2:80,948,658...81,143,447
JBrowse link
G Dnah7 dynein, axonemal, heavy chain 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:60,070,087...60,330,121
NCBI chr 9:59,564,253...59,595,347
Ensembl chr 9:60,070,739...60,330,125
Ensembl chr 9:60,070,739...60,330,125
JBrowse link
G Dnai2 dynein, axonemal, intermediate chain 2 ISO (PMID:11153919) RGD PMID:11153919 NCBI chr10:103,266,343...103,301,521
Ensembl chr10:103,266,296...103,301,544
JBrowse link
G Dnai3 dynein axonemal intermediate chain 3 ISO (MGI:MGI:6436377|PMID:30060180) RGD PMID:30060180 MGI:MGI:6436377 NCBI chr 2:251,912,432...251,970,699
Ensembl chr 2:251,912,368...251,970,768
JBrowse link
G Dnai4 dynein axonemal intermediate chain 4 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:MGI:6436377|PMID:30060180)
UniProt
RGD
PMID:30060180, PMID:21873635 GO_REF:0000024, MGI:MGI:6436377, RGD:13792537 NCBI chr 5:122,551,370...122,642,161
Ensembl chr 5:122,551,405...122,642,202
JBrowse link
G Dnhd1 dynein heavy chain domain 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:170,473,792...170,570,220
Ensembl chr 1:170,471,272...170,565,063
JBrowse link
G Drc1 dynein regulatory complex subunit 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:27,425,237...27,460,038
Ensembl chr 6:27,425,235...27,460,038
JBrowse link
axonemal microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arfgef2 ADP ribosylation factor guanine nucleotide exchange factor 2 IDA PMID:15198677 UniProt PMID:15198677 RGD:1304338 NCBI chr 3:163,570,435...163,656,612
Ensembl chr 3:163,570,532...163,656,626
JBrowse link
G Cep162 centrosomal protein 162 ISO
ISS
(PMID:23644468)
GO_REF:0000024
RGD
UniProt
PMID:23644468 GO_REF:0000024 NCBI chr 8:94,863,282...94,921,917
Ensembl chr 8:94,863,282...94,922,017
JBrowse link
G Rpgrip1l Rpgrip1-like IDA RGD PMID:17558407 RGD:11537356 NCBI chr19:17,115,266...17,208,055
Ensembl chr19:17,115,412...17,208,055
JBrowse link
G Saxo1 stabilizer of axonemal microtubules 1 ISO
IBA
(PMID:25673876)
PMID:21873635
RGD PMID:25673876, PMID:21873635 RGD:13792537 NCBI chr 5:104,771,081...104,921,001
Ensembl chr 5:104,771,392...104,920,906
JBrowse link
G Saxo2 stabilizer of axonemal microtubules 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:144,586,260...144,601,358
Ensembl chr 1:144,586,260...144,601,335
JBrowse link
G Saxol1 stabilizer of axonemal microtubules like 1 ISS
IBA
GO_REF:0000024
PMID:21873635
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr  X:29,520,263...29,522,420
Ensembl chr  X:29,520,263...29,522,420
JBrowse link
G Ttc30a1 tetratricopeptide repeat domain 30A1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:62,800,932...62,803,373
Ensembl chr 3:62,800,935...62,803,373
JBrowse link
G Ttc30b tetratricopeptide repeat domain 30B IBA
IEA
PMID:21873635
GO_REF:0000104
UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr 3:62,758,754...62,761,325
Ensembl chr 3:62,758,758...62,761,325
JBrowse link
axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:26,390,689...26,485,049 JBrowse link
G Ak8 adenylate kinase 8 ISO (MGI:MGI:5646278|PMID:24740601) RGD PMID:24740601 MGI:MGI:5646278 NCBI chr 3:7,279,429...7,394,509
Ensembl chr 3:7,279,340...7,394,513
JBrowse link
G Akap14 A-kinase anchoring protein 14 ISO (PMID:12475942) RGD PMID:12475942 NCBI chr  X:123,773,430...123,788,898
Ensembl chr  X:123,773,430...123,788,898
JBrowse link
G Ambra1 autophagy and beclin 1 regulator 1 ISO (MGI:MGI:5527012|PMID:24089209) RGD PMID:24089209 MGI:MGI:5527012 NCBI chr 3:80,634,470...80,830,068
Ensembl chr 3:80,634,470...80,830,068
JBrowse link
G Arl13b ADP-ribosylation factor like GTPase 13B ISO (MGI:MGI:4888042|PMID:21209331) RGD PMID:21209331 MGI:MGI:4888042 NCBI chr 7:1,122,567...1,188,209
Ensembl chr 7:1,122,567...1,188,209
JBrowse link
G Arl3 ADP ribosylation factor like GTPase 3 IEA
ISO
GO_REF:0000107
(MGI:MGI:5925653|PMID:26455799)
Ensembl
RGD
PMID:26455799 GO_REF:0000107, MGI:MGI:5925653 NCBI chr 1:266,287,015...266,333,099
Ensembl chr 1:266,287,017...266,333,105
JBrowse link
G Arl6 ADP-ribosylation factor like GTPase 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:42,858,476...42,884,324
Ensembl chr11:42,858,478...42,884,603
JBrowse link
G Atg14 autophagy related 14 ISO
ISS
(MGI:MGI:5527012|PMID:24089209)
GO_REF:0000024
RGD
UniProt
PMID:24089209 GO_REF:0000024, MGI:MGI:5527012 NCBI chr15:24,343,418...24,374,776
Ensembl chr15:24,343,314...24,374,753
JBrowse link
G Atg16l1 autophagy related 16-like 1 ISO (MGI:MGI:5527012|PMID:24089209) RGD PMID:24089209 MGI:MGI:5527012 NCBI chr 9:94,879,876...94,915,231
Ensembl chr 9:94,879,745...94,915,228
JBrowse link
G Atg5 autophagy related 5 ISO
IEA
ISS
(MGI:MGI:5527012|PMID:24089209)
GO_REF:0000107
GO_REF:0000024
RGD
Ensembl
UniProt
PMID:24089209 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5527012 NCBI chr20:49,301,783...49,393,147
Ensembl chr20:49,318,308...49,393,140
JBrowse link
G Atg7 autophagy related 7 ISO
ISS
(MGI:MGI:5527012|PMID:24089209)
GO_REF:0000024
RGD
UniProt
PMID:24089209 GO_REF:0000024, MGI:MGI:5527012 NCBI chr 4:146,570,113...146,777,093
Ensembl chr 4:146,598,413...146,777,124
JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:220,146,084...220,165,545
Ensembl chr 1:220,147,327...220,165,678
JBrowse link
G Bbs5 Bardet-Biedl syndrome 5 ISO (MGI:MGI:5588761|PMID:24833722) RGD PMID:24833722 MGI:MGI:5588761 NCBI chr 3:55,886,695...55,907,717
Ensembl chr 3:55,886,695...55,907,716
JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 ISO
IBA
(MGI:MGI:5492028|PMID:22302990)
PMID:21873635
RGD PMID:22302990, PMID:21873635 MGI:MGI:5492028, RGD:13792537 NCBI chr 2:123,283,402...123,322,991
Ensembl chr 2:123,283,388...123,323,170
JBrowse link
G Camsap3 calmodulin regulated spectrin-associated protein family, member 3 ISO (MGI:MGI:6436727|PMID:32482850) RGD PMID:32482850 MGI:MGI:6436727 NCBI chr12:2,133,935...2,157,403
Ensembl chr12:2,134,022...2,157,403
JBrowse link
G Ccdc39 coiled-coil domain containing 39 IEA
IBA
ISO
ISS
GO_REF:0000002
PMID:21873635
(PMID:21131972), (PMID:21131974), (PMID:26387594)
GO_REF:0000024
InterPro
RGD
UniProt
PMID:21131972, PMID:21131974, PMID:26387594, PMID:21873635 GO_REF:0000002, GO_REF:0000024, RGD:13792537 NCBI chr 2:120,278,605...120,367,829
Ensembl chr 2:120,278,605...120,316,600
JBrowse link
G Ccdc40 coiled-coil domain containing 40 ISO (PMID:23255504) RGD PMID:23255504 NCBI chr10:108,055,270...108,393,408
Ensembl chr10:108,340,240...108,372,862
JBrowse link
G Ccdc63 coiled-coil domain containing 63 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:39,905,120...39,950,719
Ensembl chr12:39,913,628...39,950,641
JBrowse link
G Ccdc65 coiled-coil domain containing 65 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:140,383,395...140,397,186
Ensembl chr 7:140,383,397...140,397,179
JBrowse link
G Ccsap centriole, cilia and spindle-associated protein ISO
IBA
(PMID:22493317)
PMID:21873635
RGD PMID:22493317, PMID:21873635 RGD:13792537 NCBI chr19:56,615,326...56,634,031
Ensembl chr19:56,617,399...56,633,633
JBrowse link
G Cenpf centromere protein F ISO (MGI:MGI:5694347|PMID:25564561) RGD PMID:25564561 MGI:MGI:5694347 NCBI chr13:108,132,499...108,178,609
Ensembl chr13:108,132,499...108,178,609
JBrowse link
G Cfap206 cilia and flagella associated protein 206 ISS
ISO
GO_REF:0000024
(MGI:MGI:6452763|PMID:32376681)
UniProt
RGD
PMID:32376681 GO_REF:0000024, MGI:MGI:6452763 NCBI chr 5:50,148,685...50,193,580
Ensembl chr 5:50,148,658...50,193,571
JBrowse link
G Cfap36 cilia and flagella associated protein 36 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:113,618,954...113,644,874
Ensembl chr14:113,618,964...113,644,779
JBrowse link
G Cfap43 cilia and flagella associated protein 43 ISO
IBA
(MGI:MGI:6402702|PMID:31884020)
PMID:21873635
RGD PMID:31884020, PMID:21873635 MGI:MGI:6402702, RGD:13792537 NCBI chr 1:267,511,359...267,598,642
Ensembl chr 1:267,511,523...267,598,639
JBrowse link
G Cfap70 cilia and flagella associated protein 70 ISO (MGI:MGI:6383288|PMID:30158508) RGD PMID:30158508 MGI:MGI:6383288 NCBI chr15:4,285,049...4,350,707
Ensembl chr15:4,285,052...4,350,714
JBrowse link
G Ctsh cathepsin H IDA RGD PMID:12838426 RGD:5686399 NCBI chr 8:97,439,155...97,458,293
Ensembl chr 8:97,439,161...97,458,287
JBrowse link
G Cys1 cystin 1 ISO (MGI:MGI:2158985|PMID:11854326), (MGI:MGI:4461844|PMID:19850956) RGD PMID:11854326, PMID:19850956 MGI:MGI:2158985, MGI:MGI:4461844 NCBI chr 6:43,844,937...43,862,131
Ensembl chr 6:43,844,937...43,862,131
JBrowse link
G Dcdc2 doublecortin domain containing 2 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(PMID:25557784), (PMID:27319779)
UniProt
RGD
PMID:25557784, PMID:27319779, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr17:41,838,201...42,031,265
Ensembl chr17:41,838,201...42,031,265
JBrowse link
G Dcx doublecortin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:115,098,675...115,175,515
Ensembl chr  X:115,098,675...115,175,299
JBrowse link
G Dnaaf1 dynein, axonemal, assembly factor 1 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:18385425)
Ensembl
UniProt
RGD
PMID:18385425, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr19:52,217,427...52,245,930
Ensembl chr19:52,217,984...52,245,929
JBrowse link
G Dnah1 dynein, axonemal, heavy chain 1 ISO
ISS
(PMID:24360805)
GO_REF:0000024
RGD
UniProt
PMID:24360805 GO_REF:0000024 NCBI chr16:7,345,131...7,407,009
Ensembl chr16:7,345,978...7,408,265
JBrowse link
G Dnah11 dynein, axonemal, heavy chain 11 ISO
IBA
(MGI:MGI:6120222|PMID:26909801)
PMID:21873635
(PMID:31178125)
RGD PMID:26909801, PMID:31178125, PMID:21873635 MGI:MGI:6120222, RGD:13792537 NCBI chr 6:145,784,893...146,099,212
Ensembl chr 6:145,785,275...146,099,053
JBrowse link
G Dnah17 dynein, axonemal, heavy chain 17 ISO
IBA
(PMID:31178125)
PMID:21873635
RGD PMID:31178125, PMID:21873635 RGD:13792537 NCBI chr10:107,028,115...107,161,288
Ensembl chr10:107,029,466...107,158,997
JBrowse link
G Dnah2 dynein, axonemal, heavy chain 2 ISO
IBA
(PMID:31178125)
PMID:21873635
RGD PMID:31178125, PMID:21873635 RGD:13792537 NCBI chr10:56,029,022...56,154,602
Ensembl chr10:56,029,029...56,154,548
JBrowse link
G Dnah5 dynein, axonemal, heavy chain 5 ISS
IBA
ISO
GO_REF:0000024
PMID:21873635
(MGI:MGI:5551687|PMID:23849778), (MGI:MGI:5607335|PMID:25192045), (MGI:MGI:6284218|PMID:29916806)
(PMID:15750039), (PMID:16492982), (PMID:18950741), (PMID:23849778), (PMID:24203976), (PMID:26387594), (PMID:26909801), (PMID:29916806), (PMID:31178125)
UniProt
RGD
PMID:15750039, PMID:16492982, PMID:18950741, PMID:23849778, PMID:24203976, PMID:25192045, PMID:26387594, PMID:26909801, PMID:29916806, PMID:31178125, PMID:21873635 GO_REF:0000024, MGI:MGI:5551687, MGI:MGI:5607335, MGI:MGI:6284218, RGD:13792537 NCBI chr 2:80,947,730...81,143,997
NCBI chr 2:81,159,060...81,337,560
Ensembl chr 2:80,948,658...81,143,447
JBrowse link
G Dnah8 dynein, axonemal, heavy chain 8 ISO (PMID:31178125) RGD PMID:31178125 NCBI chr20:9,301,317...9,560,805
Ensembl chr20:9,313,271...9,560,682
JBrowse link
G Dnah9 dynein, axonemal, heavy chain 9 ISO
IBA
(PMID:11104725), (PMID:11839535), (PMID:15750039), (PMID:18950741), (PMID:23849778), (PMID:31178125)
PMID:21873635
RGD PMID:11104725, PMID:11839535, PMID:15750039, PMID:18950741, PMID:23849778, PMID:31178125, PMID:21873635 RGD:13792537 NCBI chr10:52,351,226...52,711,289
Ensembl chr10:52,351,192...52,710,862
JBrowse link
G Dnai2 dynein, axonemal, intermediate chain 2 ISO (PMID:11153919), (PMID:18950741), (PMID:23849778)
(MGI:MGI:6284218|PMID:29916806)
RGD PMID:11153919, PMID:18950741, PMID:23849778, PMID:29916806 MGI:MGI:6284218 NCBI chr10:103,266,343...103,301,521
Ensembl chr10:103,266,296...103,301,544
JBrowse link
G Dnai4 dynein axonemal intermediate chain 4 ISS
ISO
GO_REF:0000024
(MGI:MGI:6436377|PMID:30060180)
UniProt
RGD
PMID:30060180 GO_REF:0000024, MGI:MGI:6436377 NCBI chr 5:122,551,370...122,642,161
Ensembl chr 5:122,551,405...122,642,202
JBrowse link
G Dnajb13 DnaJ heat shock protein family (Hsp40) member B13 ISO (MGI:MGI:3806784|PMID:18247331) RGD PMID:18247331 MGI:MGI:3806784 NCBI chr 1:165,515,718...165,530,163
Ensembl chr 1:165,515,726...165,530,095
JBrowse link
G Dnali1 dynein, axonemal, light intermediate chain 1 IBA
ISO
ISS
PMID:21873635
(MGI:MGI:3628860|PMID:16496424), (MGI:MGI:6284218|PMID:29916806)
(PMID:23849778), (PMID:26909801), (PMID:31178125)
GO_REF:0000024
RGD
UniProt
PMID:16496424, PMID:23849778, PMID:26909801, PMID:29916806, PMID:31178125, PMID:21873635 GO_REF:0000024, MGI:MGI:3628860, MGI:MGI:6284218, RGD:13792537 NCBI chr 5:143,053,365...143,062,203
Ensembl chr 5:143,053,367...143,062,226
JBrowse link
G Drc1 dynein regulatory complex subunit 1 ISS
IBA
GO_REF:0000024
PMID:21873635
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 6:27,425,237...27,460,038
Ensembl chr 6:27,425,235...27,460,038
JBrowse link
G Drc3 dynein regulatory complex subunit 3 ISO (PMID:26387594) RGD PMID:26387594 NCBI chr10:46,712,021...46,762,276
Ensembl chr10:46,722,109...46,762,250
JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 ISO
IBA
IEA
(MGI:MGI:5009180|PMID:12802074)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:12802074, PMID:21873635 GO_REF:0000107, MGI:MGI:5009180, RGD:13792537 NCBI chr 8:5,217,054...5,436,969
Ensembl chr 8:5,217,217...5,429,581
JBrowse link
G Dync2i2 dynein 2 intermediate chain 2 ISO (MGI:MGI:5551675|PMID:24183451) RGD PMID:24183451 MGI:MGI:5551675 NCBI chr 3:8,599,251...8,615,329
Ensembl chr 3:8,599,148...8,615,532
JBrowse link
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 ISO
IBA
(MGI:MGI:5009180|PMID:12802074)
PMID:21873635
RGD PMID:12802074, PMID:21873635 MGI:MGI:5009180, RGD:13792537 NCBI chr 6:7,900,962...7,933,795
Ensembl chr 6:7,900,972...7,933,796
JBrowse link
G Dynlt2b dynein light chain Tctex-type 2B colocalizes_with ISO (PMID:25830415) RGD PMID:25830415 NCBI chr11:71,593,302...71,601,662
Ensembl chr11:71,593,302...71,601,662
JBrowse link
G Dynlt4 dynein light chain Tctex-type 4 ISO (MGI:MGI:5510909|PMID:23789093) RGD PMID:23789093 MGI:MGI:5510909 NCBI chr 5:135,995,128...135,997,807
Ensembl chr 5:135,997,052...135,997,711
JBrowse link
G Dzip1l DAZ interacting zinc finger protein 1-like ISO (MGI:MGI:6149643|PMID:29487109) RGD PMID:29487109 MGI:MGI:6149643 NCBI chr 8:107,875,659...107,916,298
Ensembl chr 8:107,875,991...107,916,294
JBrowse link
G Efhc1 EF-hand domain containing 1 ISO
IBA
(MGI:MGI:3529636|PMID:15670853)
PMID:21873635
RGD PMID:15670853, PMID:21873635 MGI:MGI:3529636, RGD:13792537 NCBI chr 9:27,068,505...27,107,713
Ensembl chr 9:27,068,443...27,107,709
JBrowse link
G Efhc2 EF-hand domain containing 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:5,825,551...6,026,398
Ensembl chr  X:5,825,711...6,026,398
JBrowse link
G Gabarap GABA type A receptor-associated protein ISO
ISS
(MGI:MGI:5527012|PMID:24089209)
GO_REF:0000024
RGD
UniProt
PMID:24089209 GO_REF:0000024, MGI:MGI:5527012 NCBI chr10:56,601,288...56,604,223
Ensembl chr10:56,601,288...56,604,221
JBrowse link
G Gas8 growth arrest specific 8 ISS
ISO
GO_REF:0000024
(PMID:16643277), (PMID:26387594)
UniProt
RGD
PMID:16643277, PMID:26387594 GO_REF:0000024 NCBI chr19:56,316,367...56,335,873
Ensembl chr19:56,316,268...56,335,870
JBrowse link
G Gli1 GLI family zinc finger 1 ISO (MGI:MGI:3692156|PMID:16254602) RGD PMID:16254602 MGI:MGI:3692156 NCBI chr 7:70,620,794...70,633,171
Ensembl chr 7:70,620,766...70,630,338
JBrowse link
G Gli2 GLI family zinc finger 2 ISO (MGI:MGI:4888042|PMID:21209331) RGD PMID:21209331 MGI:MGI:4888042 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO (MGI:MGI:4888042|PMID:21209331) RGD PMID:21209331 MGI:MGI:4888042 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Gnat3 G protein subunit alpha transducin 3 IDA RGD PMID:17021831 RGD:2302145 NCBI chr 4:13,827,764...13,878,126
Ensembl chr 4:13,827,756...13,878,126
JBrowse link
G Ift140 intraflagellar transport 140 ISO
IBA
(MGI:MGI:4460838|PMID:20368623), (MGI:MGI:5553228|PMID:23418020)
PMID:21873635
RGD PMID:20368623, PMID:23418020, PMID:21873635 MGI:MGI:4460838, MGI:MGI:5553228, RGD:13792537 NCBI chr10:14,373,668...14,461,509
Ensembl chr10:14,373,679...14,461,160
JBrowse link
G Ift172 intraflagellar transport 172 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:26,390,686...26,485,459 JBrowse link
G Ift57 intraflagellar transport 57 ISO (MGI:MGI:4888042|PMID:21209331) RGD PMID:21209331 MGI:MGI:4888042 NCBI chr11:53,664,638...53,731,779
Ensembl chr11:53,664,638...53,731,779
JBrowse link
G Ift88 intraflagellar transport 88 ISO (MGI:MGI:2158985|PMID:11854326), (MGI:MGI:2664063|PMID:11251073), (MGI:MGI:3773480|PMID:18066062), (MGI:MGI:4460838|PMID:20368623), (MGI:MGI:5544506|PMID:24302887) RGD PMID:11251073, PMID:11854326, PMID:18066062, PMID:20368623, PMID:24302887 MGI:MGI:2158985, MGI:MGI:2664063, MGI:MGI:3773480, MGI:MGI:4460838, MGI:MGI:5544506 NCBI chr15:37,690,417...37,786,855
Ensembl chr15:37,691,345...37,784,924
JBrowse link
G Inpp5e inositol polyphosphate-5-phosphatase E ISO
ISS
(PMID:19668215)
GO_REF:0000024
(MGI:MGI:4359555|PMID:19668215)
RGD
UniProt
PMID:19668215 GO_REF:0000024, MGI:MGI:4359555 NCBI chr 3:3,843,307...3,856,154
Ensembl chr 3:3,843,307...3,855,981
JBrowse link
G Kif17 kinesin family member 17 ISO (MGI:MGI:4353477|PMID:19384852) RGD PMID:19384852 MGI:MGI:4353477 NCBI chr 5:156,628,409...156,665,752
Ensembl chr 5:156,628,432...156,666,284
JBrowse link
G Kif19 kinesin family member 19 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:103,308,392...103,334,466
Ensembl chr10:103,308,392...103,334,466
JBrowse link
G Kif3a kinesin family member 3a IDA RGD PMID:9920666 RGD:1581597 NCBI chr10:38,918,705...38,953,958
Ensembl chr10:38,918,748...38,952,785
JBrowse link
G Kifap3 kinesin-associated protein 3 ISO
IBA
(MGI:MGI:4353477|PMID:19384852)
PMID:21873635
RGD PMID:19384852, PMID:21873635 MGI:MGI:4353477, RGD:13792537 NCBI chr13:82,072,497...82,217,256
Ensembl chr13:82,072,497...82,217,252
JBrowse link
G Lca5 lebercilin LCA5 ISO
IBA
(MGI:MGI:5588761|PMID:24833722)
PMID:21873635
RGD PMID:24833722, PMID:21873635 MGI:MGI:5588761, RGD:13792537 NCBI chr 8:90,926,309...90,984,271
Ensembl chr 8:90,926,311...90,984,224
JBrowse link
G Lca5l lebercilin LCA5 like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:36,512,823...36,546,806
Ensembl chr11:36,512,974...36,533,073
JBrowse link
G LOC103689994 radial spoke head protein 4 homolog A IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:33,945,770...33,962,077
Ensembl chr20:33,945,829...33,962,045
JBrowse link
G LOC103691261 sperm flagellar protein 1-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:212,309,940...212,317,411
Ensembl chr 1:212,311,300...212,317,244
JBrowse link
G Mak male germ cell-associated kinase ISO (MGI:MGI:5298333|PMID:21148103) RGD PMID:21148103 MGI:MGI:5298333 NCBI chr17:21,531,651...21,567,742
Ensembl chr17:21,521,505...21,568,440
JBrowse link
G Map1lc3b microtubule-associated protein 1 light chain 3 beta ISO (MGI:MGI:5527012|PMID:24089209) RGD PMID:24089209 MGI:MGI:5527012 NCBI chr19:53,635,449...53,643,970
Ensembl chr19:53,629,779...53,646,058
JBrowse link
G Map4 microtubule-associated protein 4 ISO (PMID:23572511) RGD PMID:23572511 NCBI chr 8:118,013,584...118,159,934
Ensembl chr 8:118,013,612...118,159,933
JBrowse link
G Mapk15 mitogen-activated protein kinase 15 NOT ISO (PMID:29021280) RGD PMID:29021280 NCBI chr 7:117,041,287...117,061,799
Ensembl chr 7:117,055,395...117,061,047
JBrowse link
G Mapt microtubule-associated protein tau ISO (MGI:MGI:3821640|PMID:19004860) RGD PMID:19004860 MGI:MGI:3821640 NCBI chr10:92,289,002...92,386,517
Ensembl chr10:92,288,910...92,386,517
JBrowse link
G Mns1 meiosis-specific nuclear structural 1 ISO (MGI:MGI:5318625|PMID:22396656) RGD PMID:22396656 MGI:MGI:5318625 NCBI chr 8:79,054,240...79,075,119
Ensembl chr 8:79,054,237...79,075,122
JBrowse link
G Nme8 NME/NM23 family member 8 ISO (MGI:MGI:2680785|PMID:12909633) RGD PMID:12909633 MGI:MGI:2680785 NCBI chr17:47,300,932...47,368,543
Ensembl chr17:47,301,511...47,368,553
JBrowse link
G Odad1 outer dynein arm docking complex subunit 1 ISO
IBA
(PMID:25192045)
PMID:21873635
RGD PMID:25192045, PMID:21873635 RGD:13792537 NCBI chr 1:101,904,042...101,932,999
Ensembl chr 1:101,906,903...101,932,998
JBrowse link
G Odad2 outer dynein arm docking complex subunit 2 ISO (PMID:23849778), (PMID:24203976) RGD PMID:23849778, PMID:24203976 NCBI chr17:60,283,926...60,474,289
Ensembl chr17:60,287,203...60,474,031
JBrowse link
G Odad3 outer dynein arm docking complex subunit 3 ISO (PMID:25192045) RGD PMID:25192045 NCBI chr 8:23,000,912...23,014,707
Ensembl chr 8:23,000,872...23,014,499
JBrowse link
G Odad4 outer dynein arm docking complex subunit 4 ISO (PMID:27486780) RGD PMID:27486780 NCBI chr10:88,459,490...88,488,237
Ensembl chr10:88,459,490...88,488,237
JBrowse link
G Pik3c3 phosphatidylinositol 3-kinase, catalytic subunit type 3 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr18:22,964,121...23,047,896
Ensembl chr18:22,964,210...23,047,895
JBrowse link
G Pik3r4 phosphoinositide-3-kinase, regulatory subunit 4 ISO
ISS
(MGI:MGI:5527012|PMID:24089209)
GO_REF:0000024
RGD
UniProt
PMID:24089209 GO_REF:0000024, MGI:MGI:5527012 NCBI chr 8:114,300,248...114,350,686
Ensembl chr 8:114,300,257...114,350,681
JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha colocalizes_with ISO
IEA
(PMID:12475942)
GO_REF:0000107
RGD
Ensembl
PMID:12475942 GO_REF:0000107 NCBI chr19:25,095,089...25,118,869
Ensembl chr19:25,095,089...25,118,860
JBrowse link
G Prkar1a protein kinase cAMP-dependent type I regulatory subunit alpha colocalizes_with ISO (PMID:12475942) RGD PMID:12475942 NCBI chr10:97,940,705...97,959,199
Ensembl chr10:97,940,705...97,957,336
JBrowse link
G Prkar2a protein kinase cAMP-dependent type II regulatory subunit alpha colocalizes_with IEA
ISO
GO_REF:0000107
(PMID:12475942)
Ensembl
RGD
PMID:12475942 GO_REF:0000107 NCBI chr 8:117,486,085...117,548,768
Ensembl chr 8:117,486,083...117,546,370
JBrowse link
G Rp1 RP1, axonemal microtubule associated IBA
ISO
PMID:21873635
(MGI:MGI:2676521|PMID:14507858), (MGI:MGI:4460838|PMID:20368623), (MGI:MGI:4461813|PMID:20592197), (MGI:MGI:5588761|PMID:24833722), (MGI:MGI:6194004|PMID:29899041)
RGD PMID:14507858, PMID:20368623, PMID:20592197, PMID:24833722, PMID:29899041, PMID:21873635 MGI:MGI:2676521, MGI:MGI:4460838, MGI:MGI:4461813, MGI:MGI:5588761, MGI:MGI:6194004, RGD:13792537 NCBI chr 5:15,005,028...15,060,508
Ensembl chr 5:15,043,955...15,060,508
JBrowse link
G Rp1l1 RP1 like 1 ISO
IBA
(MGI:MGI:4353917|PMID:19657028)
PMID:21873635
RGD PMID:19657028, PMID:21873635 MGI:MGI:4353917, RGD:13792537 NCBI chr15:47,344,380...47,384,461
Ensembl chr15:47,373,120...47,383,508
JBrowse link
G Rpgrip1 RPGR interacting protein 1 ISO (MGI:MGI:1933524|PMID:11104772) RGD PMID:11104772 MGI:MGI:1933524 NCBI chr15:28,521,287...28,575,046
Ensembl chr15:28,522,737...28,574,737
JBrowse link
G Rpgrip1l Rpgrip1-like ISO (PMID:17558409) RGD PMID:17558409 NCBI chr19:17,115,266...17,208,055
Ensembl chr19:17,115,412...17,208,055
JBrowse link
G Rsph4a radial spoke head component 4A ISO
IBA
(PMID:23255504)
PMID:21873635
RGD PMID:23255504, PMID:21873635 RGD:13792537 NCBI chr20:32,450,701...32,467,362
Ensembl chr20:32,450,733...32,467,194
Ensembl chr20:32,450,733...32,467,194
JBrowse link
G Rsph6a radial spoke head 6 homolog A ISO
IBA
(MGI:MGI:6279049|PMID:30239614)
PMID:21873635
RGD PMID:30239614, PMID:21873635 MGI:MGI:6279049, RGD:13792537 NCBI chr 1:79,959,555...79,979,217
Ensembl chr 1:79,959,591...79,979,205
JBrowse link
G Rsph9 radial spoke head component 9 ISO
IBA
(PMID:26909801)
(MGI:MGI:6451324|PMID:30383886)
PMID:21873635
RGD PMID:26909801, PMID:30383886, PMID:21873635 MGI:MGI:6451324, RGD:13792537 NCBI chr 9:17,224,589...17,245,093
Ensembl chr 9:17,225,122...17,245,093
JBrowse link
G Septin2 septin 2 ISO (PMID:23572511) RGD PMID:23572511 NCBI chr 9:100,624,876...100,658,053
Ensembl chr 9:100,624,876...100,658,050
JBrowse link
G Septin7 septin 7 ISO
ISS
(PMID:23572511)
GO_REF:0000024
RGD
UniProt
PMID:23572511 GO_REF:0000024 NCBI chr 8:26,412,910...26,476,615
Ensembl chr 8:26,413,233...26,476,611
JBrowse link
G Septin9 septin 9 ISO
IEA
(PMID:23572511)
GO_REF:0000107
RGD
Ensembl
PMID:23572511 GO_REF:0000107 NCBI chr10:106,208,308...106,340,747
Ensembl chr10:106,264,434...106,348,490
JBrowse link
G Spag16 sperm associated antigen 16 ISO (MGI:MGI:3052627|PMID:15328412), (MGI:MGI:3619868|PMID:16382026), (MGI:MGI:3844768|PMID:19305393) RGD PMID:15328412, PMID:16382026, PMID:19305393 MGI:MGI:3052627, MGI:MGI:3619868, MGI:MGI:3844768 NCBI chr 9:77,027,626...77,833,476
Ensembl chr 9:77,320,726...77,833,281
JBrowse link
G Spag6 sperm associated antigen 6 ISO (PMID:10493827) RGD PMID:10493827 NCBI chr17:85,382,314...85,437,976
Ensembl chr17:85,382,116...85,437,975
JBrowse link
G Spag6l sperm associated antigen 6-like ISO (MGI:MGI:6331463|PMID:30535028) RGD PMID:30535028 MGI:MGI:6331463 NCBI chr11:88,424,493...88,517,910
Ensembl chr11:88,424,414...88,508,601
JBrowse link
G Spata4 spermatogenesis associated 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:39,961,160...39,970,530
Ensembl chr16:39,961,149...39,970,532
JBrowse link
G Spata7 spermatogenesis associated 7 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:25398945)
Ensembl
UniProt
RGD
PMID:25398945, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr 6:122,603,248...122,648,718
Ensembl chr 6:122,603,269...122,648,699
JBrowse link
G Spef1 sperm flagellar 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:123,712,907...123,720,787
Ensembl chr 3:123,714,564...123,718,432
JBrowse link
G Tmem67 transmembrane protein 67 colocalizes_with IDA RGD PMID:23516626 RGD:11535084 NCBI chr 5:25,666,138...25,721,056
Ensembl chr 5:25,666,137...25,721,072
JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 ISO
IBA
(MGI:MGI:5298450|PMID:21945076)
PMID:21873635
RGD PMID:21945076, PMID:21873635 MGI:MGI:5298450, RGD:13792537 NCBI chr 9:98,621,499...98,658,223
Ensembl chr 9:98,621,506...98,656,901
JBrowse link
G Ttll10 tubulin tyrosine ligase like 10 ISO
ISS
(MGI:MGI:3850271|PMID:19524510)
GO_REF:0000024
RGD
UniProt
PMID:19524510 GO_REF:0000024, MGI:MGI:3850271 NCBI chr 5:173,471,020...173,517,783
Ensembl chr 5:173,471,010...173,484,986
JBrowse link
G Ttll3 tubulin tyrosine ligase like 3 ISO (MGI:MGI:3850271|PMID:19524510) RGD PMID:19524510 MGI:MGI:3850271 NCBI chr 4:145,341,059...145,366,614
Ensembl chr 4:145,342,193...145,365,496
JBrowse link
G Ttll8 tubulin tyrosine ligase like 8 ISO (MGI:MGI:3850271|PMID:19524510) RGD PMID:19524510 MGI:MGI:3850271 NCBI chr 7:129,906,998...129,948,578 JBrowse link
G Tubb4a tubulin, beta 4A class IVa ISO (PMID:12475942) RGD PMID:12475942 NCBI chr 9:9,961,020...9,968,420
Ensembl chr 9:9,961,021...9,968,486
JBrowse link
G Tulp3 TUB like protein 3 ISO (MGI:MGI:3841503|PMID:19286674) RGD PMID:19286674 MGI:MGI:3841503 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519
JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr14:106,393,959...106,759,511
Ensembl chr14:106,393,959...106,759,505
JBrowse link
G Wdr11 WD repeat domain 11 ISO (MGI:MGI:6116377|PMID:29263200) RGD PMID:29263200 MGI:MGI:6116377 NCBI chr 1:202,770,810...202,816,336
Ensembl chr 1:202,770,775...202,816,334
JBrowse link
G Wdr35 WD repeat domain 35 ISO
IBA
ISS
(MGI:MGI:4950635|PMID:21473986)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:21473986, PMID:21873635 GO_REF:0000024, MGI:MGI:4950635, RGD:13792537 NCBI chr 6:34,094,291...34,152,048
Ensembl chr 6:34,094,306...34,151,622
JBrowse link
distal portion of axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnah9 dynein, axonemal, heavy chain 9 ISO (PMID:26909801), (PMID:30471717) RGD PMID:26909801, PMID:30471717 NCBI chr10:52,351,226...52,711,289
Ensembl chr10:52,351,192...52,710,862
JBrowse link
inner dynein arm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnah1 dynein, axonemal, heavy chain 1 ISO
IBA
(PMID:24360805)
PMID:21873635
RGD PMID:24360805, PMID:21873635 RGD:13792537 NCBI chr16:7,345,131...7,407,009
Ensembl chr16:7,345,978...7,408,265
JBrowse link
G Dnah12 dynein, axonemal, heavy chain 12 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:2,377,218...2,534,130
Ensembl chr16:2,379,480...2,534,131
JBrowse link
G Dnah7 dynein, axonemal, heavy chain 7 ISO
IBA
IEA
(PMID:11877439)
PMID:21873635
GO_REF:0000107
RGD
Ensembl
PMID:11877439, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 9:60,070,087...60,330,121
NCBI chr 9:59,564,253...59,595,347
Ensembl chr 9:60,070,739...60,330,125
Ensembl chr 9:60,070,739...60,330,125
JBrowse link
G Dnai3 dynein axonemal intermediate chain 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:251,912,432...251,970,699
Ensembl chr 2:251,912,368...251,970,768
JBrowse link
G Dnhd1 dynein heavy chain domain 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:170,473,792...170,570,220
Ensembl chr 1:170,471,272...170,565,063
JBrowse link
outer dynein arm term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc103 coiled-coil domain containing 103 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:90,984,213...90,987,829
Ensembl chr10:90,984,227...90,987,823
JBrowse link
G Cfap70 cilia and flagella associated protein 70 ISO (PMID:31621862) RGD PMID:31621862 NCBI chr15:4,285,049...4,350,707
Ensembl chr15:4,285,052...4,350,714
JBrowse link
G Dnah17 dynein, axonemal, heavy chain 17 ISO (PMID:31178125) RGD PMID:31178125 NCBI chr10:107,028,115...107,161,288
Ensembl chr10:107,029,466...107,158,997
JBrowse link
G Dnah5 dynein, axonemal, heavy chain 5 ISO (PMID:11062149), (PMID:11788826), (PMID:16627867), (PMID:22499950)
(MGI:MGI:6147712|PMID:27353389)
RGD PMID:11062149, PMID:11788826, PMID:16627867, PMID:22499950, PMID:27353389 MGI:MGI:6147712 NCBI chr 2:80,947,730...81,143,997
NCBI chr 2:81,159,060...81,337,560
Ensembl chr 2:80,948,658...81,143,447
JBrowse link
G Dnah8 dynein, axonemal, heavy chain 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:9,301,317...9,560,805
Ensembl chr20:9,313,271...9,560,682
JBrowse link
G Dnah9 dynein, axonemal, heavy chain 9 ISO (MGI:MGI:6147712|PMID:27353389) RGD PMID:27353389 MGI:MGI:6147712 NCBI chr10:52,351,226...52,711,289
Ensembl chr10:52,351,192...52,710,862
JBrowse link
G Dnai1 dynein, axonemal, intermediate chain 1 ISO
IBA
(PMID:11231901), (PMID:16858015)
PMID:21873635
RGD PMID:11231901, PMID:16858015, PMID:21873635 RGD:13792537 NCBI chr 5:57,947,796...58,017,985
Ensembl chr 5:57,947,716...58,017,992
JBrowse link
G Dnai2 dynein, axonemal, intermediate chain 2 ISO
IBA
(PMID:18950741)
PMID:21873635
RGD PMID:18950741, PMID:21873635 RGD:13792537 NCBI chr10:103,266,343...103,301,521
Ensembl chr10:103,266,296...103,301,544
JBrowse link
G Dync1i2 dynein cytoplasmic 1 intermediate chain 2 ISO (MGI:MGI:6147712|PMID:27353389) RGD PMID:27353389 MGI:MGI:6147712 NCBI chr 3:57,817,677...57,868,854
Ensembl chr 3:57,817,693...57,868,854
JBrowse link
G Nme8 NME/NM23 family member 8 ISO
IEA
(PMID:17360648)
GO_REF:0000107
RGD
Ensembl
PMID:17360648 GO_REF:0000107 NCBI chr17:47,300,932...47,368,543
Ensembl chr17:47,301,511...47,368,553
JBrowse link
G Odad1 outer dynein arm docking complex subunit 1 ISO
ISS
(PMID:23261303)
GO_REF:0000024
RGD
UniProt
PMID:23261303 GO_REF:0000024 NCBI chr 1:101,904,042...101,932,999
Ensembl chr 1:101,906,903...101,932,998
JBrowse link
outer dynein arm docking complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Odad4 outer dynein arm docking complex subunit 4 ISO (PMID:27486780) RGD PMID:27486780 NCBI chr10:88,459,490...88,488,237
Ensembl chr10:88,459,490...88,488,237
JBrowse link
proximal portion of axoneme term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnah11 dynein, axonemal, heavy chain 11 ISO (PMID:26909801)
(MGI:MGI:6120222|PMID:26909801)
RGD PMID:26909801 MGI:MGI:6120222 NCBI chr 6:145,784,893...146,099,212
Ensembl chr 6:145,785,275...146,099,053
JBrowse link
radial spoke term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfap206 cilia and flagella associated protein 206 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:50,148,685...50,193,580
Ensembl chr 5:50,148,658...50,193,571
JBrowse link
G Rsph6a radial spoke head 6 homolog A IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:79,959,555...79,979,217
Ensembl chr 1:79,959,591...79,979,205
JBrowse link
G Rsph9 radial spoke head component 9 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:17,224,589...17,245,093
Ensembl chr 9:17,225,122...17,245,093
JBrowse link
radial spoke head term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rsph4a radial spoke head component 4A ISO MGI:MGI:5882201 (MGI:MGI:5882054|PMID:26506310) RGD PMID:26506310 MGI:MGI:5882054 NCBI chr20:32,450,701...32,467,362
Ensembl chr20:32,450,733...32,467,194
Ensembl chr20:32,450,733...32,467,194
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20610
    cellular anatomical entity 20359
      organelle 13271
        cilium 686
          ciliary plasm 132
            axoneme + 130
Path 2
Term Annotations click to browse term
  cellular_component 20610
    cellular anatomical entity 20359
      intracellular anatomical structure 14705
        cytoplasm 11459
          cytoplasmic region 295
            plasma membrane bounded cell projection cytoplasm 240
              ciliary plasm 132
                axoneme + 130
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.