ONTOLOGY REPORT - ANNOTATIONS
Term: site of DNA damage
Accession: GO:0090734
browse the term
Definition: A region of a chromosome at which DNA damage has occurred. DNA damage signaling and repair proteins accumulate at the lesion to respond to the damage and repair the DNA to form a continuous DNA helix.
Synonyms: xref: Wikipedia:DNA_repair
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Adprs
ADP-ribosylserine hydrolase
located_in
ISO
(PMID:30045870)
RGD
PMID:30045870
NCBI chr 5:138,614,022...138,619,296
Ensembl chr 5:138,614,022...138,619,296
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Aplf
aprataxin and PNKP like factor
located_in
ISO
(PMID:21211722)
RGD
PMID:21211722
NCBI chr 4:120,070,471...120,122,656
Ensembl chr 4:120,070,471...120,122,633
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Aunip
aurora kinase A and ninein interacting protein
located_in
ISO ISS
(PMID:29042561) GO_REF:0000024
RGD UniProt
PMID:29042561
GO_REF:0000024
NCBI chr 5:146,722,157...146,736,233
Ensembl chr 5:146,722,337...146,736,501
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Cbx1
chromobox 1
located_in
ISO
(PMID:27248496)
RGD
PMID:27248496
NCBI chr10:81,770,307...81,789,981
Ensembl chr10:81,770,342...81,791,096
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Cbx3
chromobox 3
located_in
ISO
(PMID:27248496)
RGD
PMID:27248496
NCBI chr 4:80,545,450...80,559,284
Ensembl chr 4:80,546,010...80,559,283
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Cbx5
chromobox 5
located_in
ISO
(PMID:27248496)
RGD
PMID:27248496
NCBI chr 7:134,333,165...134,376,102
Ensembl chr 7:134,331,335...134,375,022
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Chd4
chromodomain helicase DNA binding protein 4
located_in
IEA ISO
GO_REF:0000107 (PMID:25593309)
Ensembl RGD
PMID:25593309
GO_REF:0000107
NCBI chr 4:157,898,503...157,931,632
Ensembl chr 4:157,899,391...157,931,541
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Cul5
cullin 5
located_in
IEA ISO ISS
GO_REF:0000107 (PMID:28292928) GO_REF:0000024
Ensembl RGD UniProt
PMID:28292928
GO_REF:0000024 GO_REF:0000107
NCBI chr 8:54,012,963...54,066,751
Ensembl chr 8:54,016,006...54,066,666
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Ddb2
damage specific DNA binding protein 2
is_active_in
ISO
(PMID:19109893)
RGD
PMID:19109893
NCBI chr 3:77,185,114...77,207,650
Ensembl chr 3:77,185,109...77,207,631
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Eloa
elongin A
located_in
IDA
PMID:28292928
UniProt
PMID:28292928
RGD:14929206
NCBI chr 5:148,231,600...148,246,760
Ensembl chr 5:148,231,596...148,246,765
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Ercc6
ERCC excision repair 6, chromatin remodeling factor
located_in
ISO
(PMID:28292928)
RGD
PMID:28292928
NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587
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Exd2
exonuclease 3'-5' domain containing 2
located_in
ISO
(PMID:31255466)
RGD
PMID:31255466
NCBI chr 6:100,116,867...100,150,452
Ensembl chr 6:100,116,867...100,150,442
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H2ax
H2A.X variant histone
located_in
ISO
(PMID:27248496)
RGD
PMID:27248496
NCBI chr 8:44,671,927...44,673,257
Ensembl chr 8:44,671,786...44,673,239
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Helq
helicase, POLQ-like
is_active_in
ISO
(PMID:34937945)
RGD
PMID:34937945
NCBI chr14:8,818,582...8,862,926
Ensembl chr14:8,818,592...8,862,960
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Hpf1
histone PARylation factor 1
located_in
ISO
(PMID:32939087)
RGD
PMID:32939087
NCBI chr16:29,203,749...29,219,651
Ensembl chr16:29,183,256...29,219,716
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Hrob
homologous recombination factor with OB-fold
located_in
ISO ISS IEA
(PMID:31467087) GO_REF:0000024 GO_REF:0000107
RGD UniProt Ensembl
PMID:31467087
GO_REF:0000024 GO_REF:0000107
NCBI chr10:87,206,017...87,222,483
Ensembl chr10:87,206,049...87,222,483
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Kat7
lysine acetyltransferase 7
located_in
ISO ISS
(PMID:28719581) GO_REF:0000024
RGD UniProt
PMID:28719581
GO_REF:0000024
NCBI chr10:80,221,519...80,255,590
Ensembl chr10:80,221,524...80,255,567
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Mms22l
MMS22-like, DNA repair protein
is_active_in
ISO
(PMID:27797818)
RGD
PMID:27797818
NCBI chr 5:38,197,707...38,313,745
Ensembl chr 5:38,197,779...38,313,745
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Nkx3-1
NK3 homeobox 1
located_in
ISO
(PMID:20395202)
RGD
PMID:20395202
NCBI chr15:44,473,851...44,476,443
Ensembl chr15:44,473,851...44,476,441
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Oard1
O-acyl-ADP-ribose deacylase 1
located_in
ISO
(PMID:23481255)
RGD
PMID:23481255
NCBI chr 9:12,576,894...12,587,264
Ensembl chr 9:12,578,970...12,587,249
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Parp1
poly (ADP-ribose) polymerase 1
located_in is_active_in
ISO ISS
(PMID:27248496) GO_REF:0000024 (PMID:22683995), (PMID:26626479), (PMID:26626480), (PMID:30675909), (PMID:32241924), (PMID:32358582), (PMID:34795260) (MGI:5448491|PMID:22736760)
RGD UniProt
PMID:22683995 PMID:22736760 PMID:26626479 PMID:26626480 PMID:27248496 PMID:30675909 PMID:32241924 PMID:32358582 PMID:34795260 More...
GO_REF:0000024 MGI:5448491
NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404
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Parp2
poly (ADP-ribose) polymerase 2
located_in is_active_in
ISO
(PMID:26704974), (PMID:32939087) (PMID:30104678)
RGD
PMID:26704974 PMID:30104678 PMID:32939087
NCBI chr15:24,034,069...24,044,340
Ensembl chr15:24,034,106...24,044,338
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Parp9
poly (ADP-ribose) polymerase family, member 9
located_in
ISO
(PMID:28525742)
RGD
PMID:28525742
NCBI chr11:64,780,977...64,814,995
Ensembl chr11:64,780,981...64,815,455
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Polk
DNA polymerase kappa
colocalizes_with
ISO
(PMID:28297716)
RGD
PMID:28297716
NCBI chr 2:27,822,228...27,882,331
Ensembl chr 2:27,822,679...27,882,313
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Rfwd3
ring finger and WD repeat domain 3
located_in
ISO
(PMID:28575657), (PMID:28575658)
RGD
PMID:28575657 PMID:28575658
NCBI chr19:39,235,883...39,268,536
Ensembl chr19:39,236,787...39,268,479
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Rpa1
replication protein A1
located_in
ISO
(PMID:27248496)
RGD
PMID:27248496
NCBI chr10:60,148,869...60,199,999
Ensembl chr10:60,148,793...60,199,949
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Sirt6
sirtuin 6
is_active_in
ISO
(PMID:19109893)
RGD
PMID:19109893
NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914
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Slfn13
schlafen family member 13
located_in
ISO
(PMID:29395061)
RGD
PMID:29395061
NCBI chr10:67,909,105...67,955,912
Ensembl chr10:67,909,106...67,925,383
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Spindoc
spindlin interactor and repressor of chromatin binding
is_active_in
ISO
(PMID:34737271)
RGD
PMID:34737271
NCBI chr 1:204,541,647...204,565,109
Ensembl chr 1:204,542,335...204,564,144
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Traip
TRAF-interacting protein
located_in is_active_in
ISO IBA
(PMID:26711499), (PMID:30165463) PMID:21873635
RGD
PMID:26711499 PMID:30165463 PMID:21873635
RGD:13792537
NCBI chr 8:108,641,860...108,661,640
Ensembl chr 8:108,641,852...108,661,638
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Ubqln4
ubiquilin 4
located_in
ISO
(PMID:30612738)
RGD
PMID:30612738
NCBI chr 2:174,012,726...174,028,062
Ensembl chr 2:174,012,777...174,028,059
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Wdr76
WD repeat domain 76
located_in
ISO
(PMID:27248496)
RGD
PMID:27248496
NCBI chr 3:108,456,784...108,491,528
Ensembl chr 3:108,456,815...108,490,840
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Xpc
XPC complex subunit, DNA damage recognition and repair factor
is_active_in
ISO
(MGI:5427285|PMID:22431748)
RGD
PMID:22431748
MGI:5427285
NCBI chr 4:123,993,670...124,020,922
Ensembl chr 4:123,993,666...124,021,010
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Xrcc1
X-ray repair cross complementing 1
is_active_in
ISO
(PMID:14500814), (PMID:34102106), (PMID:34811483)
RGD
PMID:14500814 PMID:34102106 PMID:34811483
NCBI chr 1:80,140,495...80,168,705
Ensembl chr 1:80,141,207...80,168,701
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Xrcc5
X-ray repair cross complementing 5
located_in
ISO
(PMID:27248496)
RGD
PMID:27248496
NCBI chr 9:73,955,220...74,044,020
Ensembl chr 9:73,955,216...74,044,018
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Zmynd8
zinc finger, MYND-type containing 8
located_in
ISO
(PMID:25593309)
RGD
PMID:25593309
NCBI chr 3:154,528,917...154,629,532
Ensembl chr 3:154,529,043...154,628,463
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AABR07031480.1
is_active_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
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Actr2
actin related protein 2
located_in
ISO ISS
(PMID:29925947) GO_REF:0000024
RGD UniProt
PMID:29925947
GO_REF:0000024
NCBI chr14:94,296,443...94,333,735
Ensembl chr14:94,296,443...94,340,524
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Actr3
actin related protein 3
located_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr13:36,800,739...36,843,837
Ensembl chr13:36,800,093...36,844,124
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Aplf
aprataxin and PNKP like factor
is_active_in located_in
IBA ISO
PMID:21873635 (PMID:23689425) (PMID:21211721)
RGD
PMID:21211721 PMID:23689425 PMID:21873635
RGD:13792537
NCBI chr 4:120,070,471...120,122,656
Ensembl chr 4:120,070,471...120,122,633
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Arpc1a
actin related protein 2/3 complex, subunit 1A
located_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr12:9,502,496...9,525,304
Ensembl chr12:9,502,501...9,525,330
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Arpc2
actin related protein 2/3 complex, subunit 2
located_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr 9:75,820,782...75,851,471
Ensembl chr 9:75,820,770...75,851,471
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Arpc5
actin related protein 2/3 complex, subunit 5
located_in
ISS
GO_REF:0000024
UniProt
GO_REF:0000024
NCBI chr13:64,904,504...64,913,413
Ensembl chr13:64,887,136...64,913,410
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Atf2
activating transcription factor 2
located_in
ISS ISO
GO_REF:0000024 (MGI:5882896|PMID:15916964) (PMID:15916964)
UniProt RGD
PMID:15916964
GO_REF:0000024 MGI:5882896
NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236
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Brme1
break repair meiotic recombinase recruitment factor 1
is_active_in
ISO
(MGI:6443349|PMID:32463460)
RGD
PMID:32463460
MGI:6443349
NCBI chr19:23,990,049...24,011,774
Ensembl chr19:23,990,045...24,011,850
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Cgas
cyclic GMP-AMP synthase
located_in is_active_in
ISO IBA
(PMID:30356214) PMID:21873635
RGD
PMID:30356214 PMID:21873635
RGD:13792537
NCBI chr 8:79,292,282...79,306,998
Ensembl chr 8:79,294,511...79,305,496
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Chd1l
chromodomain helicase DNA binding protein 1-like
is_active_in
ISO
(PMID:29220652), (PMID:29220653)
RGD
PMID:29220652 PMID:29220653
NCBI chr 2:185,138,526...185,217,498
Ensembl chr 2:185,139,308...185,217,595
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Cyren
cell cycle regulator of NHEJ
is_active_in
ISO ISS
(MGI:6202149|PMID:30017584) GO_REF:0000024
RGD UniProt
PMID:30017584
GO_REF:0000024 MGI:6202149
NCBI chr 4:63,547,311...63,553,394
Ensembl chr 4:63,547,335...63,551,602
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Ddb1
damage-specific DNA binding protein 1
is_active_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 1:207,252,890...207,278,685
Ensembl chr 1:207,252,890...207,278,676
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Dmc1
DNA meiotic recombinase 1
is_active_in
ISO
(MGI:6283956|PMID:30760716), (MGI:6443349|PMID:32463460)
RGD
PMID:30760716 PMID:32463460
MGI:6283956 MGI:6443349
NCBI chr 7:111,124,888...111,167,465
Ensembl chr 7:111,124,888...111,167,952
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Esco2
establishment of sister chromatid cohesion N-acetyltransferase 2
located_in
ISO
(MGI:5465053|PMID:22699483), (MGI:5493398|PMID:22614755)
RGD
PMID:22614755 PMID:22699483
MGI:5465053 MGI:5493398
NCBI chr15:40,034,566...40,052,295
Ensembl chr15:40,034,568...40,055,306
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Fh
fumarate hydratase
located_in
ISO
(PMID:26237645)
RGD
PMID:26237645
NCBI chr13:87,524,331...87,550,215
Ensembl chr13:87,524,337...87,550,266
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H2ax
H2A.X variant histone
located_in
ISO
(MGI:5465053|PMID:22699483), (MGI:5470363|PMID:23133398) (PMID:21270334)
RGD
PMID:21270334 PMID:22699483 PMID:23133398
MGI:5465053 MGI:5470363
NCBI chr 8:44,671,927...44,673,257
Ensembl chr 8:44,671,786...44,673,239
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Helb
DNA helicase B
located_in
ISO
(PMID:26774285)
RGD
PMID:26774285
NCBI chr 7:55,588,510...55,615,979
Ensembl chr 7:55,588,798...55,615,585
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Hus1
HUS1 checkpoint clamp component
is_active_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr14:83,688,702...83,703,466
Ensembl chr14:83,688,708...83,703,442
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Iffo1
intermediate filament family orphan 1
located_in
ISO
(PMID:31548606)
RGD
PMID:31548606
NCBI chr 4:157,945,075...157,962,302
Ensembl chr 4:157,945,107...157,962,302
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Inip
INTS3 and NABP interacting protein
located_in
ISO
(PMID:19683501)
RGD
PMID:19683501
NCBI chr 5:74,648,392...74,662,628
Ensembl chr 5:74,648,392...74,662,628
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Ints3
integrator complex subunit 3
located_in
ISO
(PMID:19683501)
RGD
PMID:19683501
NCBI chr 2:175,859,421...175,911,683
Ensembl chr 2:175,859,440...175,911,709
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Kdm4d
lysine demethylase 4D
located_in
ISO
(MGI:5552986|PMID:24550317) (PMID:24550317)
RGD
PMID:24550317
MGI:5552986
NCBI chr 8:11,279,756...11,304,920
Ensembl chr 8:11,268,859...11,305,290
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Lmna
lamin A/C
located_in
ISO IEA ISS
(PMID:31548606) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:31548606
GO_REF:0000024 GO_REF:0000107
NCBI chr 2:173,939,751...173,960,423
Ensembl chr 2:173,939,751...173,960,423
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LOC100362927
replication protein A3-like
is_active_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr12:45,908,653...45,909,063
Ensembl chr12:45,908,683...45,909,048
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LOC102557137
E3 ubiquitin-protein ligase RNF168-like
is_active_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr X:40,065,873...40,067,029
Ensembl chr X:40,065,873...40,067,207
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Mre11
MRE11 homolog, double strand break repair nuclease
located_in is_active_in
ISS IEA IBA ISO
GO_REF:0000024 GO_REF:0000107 PMID:21873635 (PMID:15916964), (PMID:30612738)
UniProt Ensembl RGD
PMID:15916964 PMID:30612738 PMID:21873635
GO_REF:0000024 GO_REF:0000107, RGD:13792537
NCBI chr 8:11,618,876...11,680,451
Ensembl chr 8:11,632,354...11,678,279
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Nabp1
nucleic acid binding protein 1
located_in
ISO
(PMID:19683501)
RGD
PMID:19683501
NCBI chr 9:50,098,552...50,133,982
Ensembl chr 9:50,126,726...50,134,107
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Nabp2
nucleic acid binding protein 2
located_in
ISO IEA
(PMID:19683501) GO_REF:0000107
RGD Ensembl
PMID:19683501
GO_REF:0000107
NCBI chr 7:830,949...836,551
Ensembl chr 7:830,949...838,027
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Nbn
nibrin
located_in
IEA ISO
GO_REF:0000107 (PMID:15916964)
Ensembl RGD
PMID:15916964
GO_REF:0000107
NCBI chr 5:29,459,574...29,494,152
Ensembl chr 5:29,459,457...29,494,150
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Nhej1
nonhomologous end-joining factor 1
is_active_in
ISO ISS
(PMID:18064046), (PMID:18644470), (PMID:27437582), (PMID:28500754) GO_REF:0000024
RGD UniProt
PMID:18064046 PMID:18644470 PMID:27437582 PMID:28500754
GO_REF:0000024
NCBI chr 9:76,526,322...76,622,488
Ensembl chr 9:76,526,324...76,622,444
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Parp1
poly (ADP-ribose) polymerase 1
located_in is_active_in
ISO ISS
(PMID:26344098), (PMID:30356214) GO_REF:0000024 (PMID:29234005) (PMID:26344098), (PMID:27568560), (PMID:30356214)
RGD UniProt
PMID:26344098 PMID:27568560 PMID:29234005 PMID:30356214
GO_REF:0000024
NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404
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Parp3
poly (ADP-ribose) polymerase family, member 3
located_in is_active_in
ISO IBA
(MGI:4947917|PMID:21270334) (PMID:21270334) PMID:21873635
RGD
PMID:21270334 PMID:21873635
MGI:4947917 , RGD:13792537
NCBI chr 8:107,111,010...107,117,073
Ensembl chr 8:107,111,012...107,116,782
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Paxx
PAXX, non-homologous end joining factor
located_in is_active_in
ISO IBA
(PMID:25670504) PMID:21873635
RGD
PMID:25670504 PMID:21873635
RGD:13792537
NCBI chr 3:8,274,762...8,276,338
Ensembl chr 3:8,274,762...8,276,521
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Phf1
PHD finger protein 1
located_in
ISO
(PMID:23142980)
RGD
PMID:23142980
NCBI chr20:5,017,765...5,022,872
Ensembl chr20:5,017,893...5,022,871
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Pnkp
polynucleotide kinase 3'-phosphatase
is_active_in
ISO
(PMID:28453785) (MGI:5780352|PMID:26774286)
RGD
PMID:26774286 PMID:28453785
MGI:5780352
NCBI chr 1:95,341,465...95,346,921
Ensembl chr 1:95,341,620...95,346,920
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Polh
DNA polymerase eta
is_active_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 9:14,778,355...14,813,210
Ensembl chr 9:14,777,888...14,812,723
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Poll
DNA polymerase lambda
is_active_in
ISO ISS
(PMID:30250067) GO_REF:0000024
RGD UniProt
PMID:30250067
GO_REF:0000024
NCBI chr 1:244,400,202...244,408,762
Ensembl chr 1:244,400,204...244,408,662
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Prpf19
pre-mRNA processing factor 19
located_in
ISS ISO
GO_REF:0000024 (PMID:18263876)
UniProt RGD
PMID:18263876
GO_REF:0000024
NCBI chr 1:207,541,582...207,552,664
Ensembl chr 1:207,541,595...207,552,662
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Rad18
RAD18 E3 ubiquitin protein ligase
located_in
ISO
(PMID:25931565)
RGD
PMID:25931565
NCBI chr 4:145,735,654...145,821,102
Ensembl chr 4:145,735,654...145,821,069
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Rad50
RAD50 double strand break repair protein
located_in
ISO IEA
(PMID:15916964) GO_REF:0000107
RGD Ensembl
PMID:15916964
GO_REF:0000107
NCBI chr10:37,809,353...37,861,309
Ensembl chr10:37,808,726...37,861,396
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Rad51
RAD51 recombinase
located_in is_active_in
ISO
(PMID:24550317) (MGI:6283956|PMID:30760716), (MGI:6443349|PMID:32463460)
RGD
PMID:24550317 PMID:30760716 PMID:32463460
MGI:6283956 MGI:6443349
NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035
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Rbbp8
RB binding protein 8, endonuclease
is_active_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr18:2,922,985...2,988,851
Ensembl chr18:2,921,286...2,988,846
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Rfwd3
ring finger and WD repeat domain 3
colocalizes_with
ISO
(PMID:21504906)
RGD
PMID:21504906
NCBI chr19:39,235,883...39,268,536
Ensembl chr19:39,236,787...39,268,479
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Rif1
replication timing regulatory factor 1
located_in
ISO
(PMID:28241136) (MGI:5468036|PMID:23306439), (MGI:5468037|PMID:23306437), (MGI:5476381|PMID:23333305)
RGD
PMID:23306437 PMID:23306439 PMID:23333305 PMID:28241136
MGI:5468036 MGI:5468037 MGI:5476381
NCBI chr 3:36,554,689...36,607,961
Ensembl chr 3:36,554,697...36,603,617
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Rnf138
ring finger protein 138
located_in is_active_in
ISO IBA ISS
(PMID:26502055), (PMID:26502057) PMID:21873635 GO_REF:0000024
RGD UniProt
PMID:26502055 PMID:26502057 PMID:21873635
GO_REF:0000024, RGD:13792537
NCBI chr18:12,291,557...12,315,931
Ensembl chr18:12,291,590...12,315,930
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Rnf138l1
ring finger protein 138 like 1
is_active_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr X:30,739,541...30,740,614
Ensembl chr X:30,739,413...30,740,613
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Rnf168
ring finger protein 168
located_in is_active_in
ISO IBA ISS
(PMID:19500350), (PMID:21041483) PMID:21873635 GO_REF:0000024
RGD UniProt
PMID:19500350 PMID:21041483 PMID:21873635
GO_REF:0000024, RGD:13792537
NCBI chr11:68,486,313...68,508,296
Ensembl chr11:68,486,321...68,508,277
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Rnf169
ring finger protein 169
located_in is_active_in
ISO IBA
(PMID:22492721), (PMID:22733822), (PMID:22742833) PMID:21873635
RGD
PMID:22492721 PMID:22733822 PMID:22742833 PMID:21873635
RGD:13792537
NCBI chr 1:154,250,462...154,311,867
Ensembl chr 1:154,254,473...154,311,653
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Rnf8
ring finger protein 8
located_in is_active_in
ISO IBA ISS
(PMID:22266820) PMID:21873635 GO_REF:0000024
RGD UniProt
PMID:22266820 PMID:21873635
GO_REF:0000024, RGD:13792537
NCBI chr20:7,682,258...7,710,448
Ensembl chr20:7,682,322...7,708,491
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Rpa2
replication protein A2
colocalizes_with is_active_in
ISO IBA ISS
(PMID:21504906) PMID:21873635 GO_REF:0000024
RGD UniProt
PMID:21504906 PMID:21873635
GO_REF:0000024, RGD:13792537
NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350
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Rpa3
replication protein A3
is_active_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 4:36,304,649...36,307,755
Ensembl chr 4:36,304,651...36,307,709
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Samhd1
SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1
located_in
ISO
(PMID:28834754), (PMID:29670289)
RGD
PMID:28834754 PMID:29670289
NCBI chr 3:145,761,549...145,794,420
Ensembl chr 3:145,761,558...145,794,386
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Setmar
SET domain and mariner transposase fusion gene
located_in
ISO
(PMID:18263876), (PMID:21187428), (PMID:22231448)
RGD
PMID:18263876 PMID:21187428 PMID:22231448
NCBI chr 4:141,046,058...141,058,183
Ensembl chr 4:141,046,069...141,058,197
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Shld1
shieldin complex subunit 1
located_in is_active_in
ISO IBA
(PMID:29656893) PMID:21873635
RGD
PMID:29656893 PMID:21873635
RGD:13792537
NCBI chr 3:119,938,695...120,011,068
Ensembl chr 3:119,938,833...120,009,550
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Shld2
shieldin complex subunit 2
located_in is_active_in
ISO IBA
(PMID:29656893) PMID:21873635
RGD
PMID:29656893 PMID:21873635
RGD:13792537
NCBI chr16:9,544,940...9,640,323
Ensembl chr16:9,548,660...9,639,965
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Shld3
shieldin complex subunit 3
located_in
ISO
(PMID:29656893)
RGD
PMID:29656893
NCBI chr 2:35,294,956...35,301,865
Ensembl chr 2:35,295,859...35,302,346
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Sirt6
sirtuin 6
is_active_in
ISO
(PMID:21680843), (PMID:23911928), (PMID:27568560), (PMID:31995034), (PMID:32538779)
RGD
PMID:21680843 PMID:23911928 PMID:27568560 PMID:31995034 PMID:32538779
NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914
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Sirt7
sirtuin 7
located_in
ISS ISO
GO_REF:0000024 (MGI:5789069|PMID:27225932) (PMID:27436229)
UniProt RGD
PMID:27225932 PMID:27436229
GO_REF:0000024 MGI:5789069
NCBI chr10:105,896,476...105,903,301
Ensembl chr10:105,896,476...105,903,172
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Slf1
SMC5-SMC6 complex localization factor 1
located_in
ISO
(PMID:25931565)
RGD
PMID:25931565
NCBI chr 2:6,767,015...6,874,428
Ensembl chr 2:6,767,015...6,867,149
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Slf2
SMC5-SMC6 complex localization factor 2
located_in is_active_in
ISO IBA
(PMID:25931565) PMID:21873635
RGD
PMID:25931565 PMID:21873635
RGD:13792537
NCBI chr 1:243,782,781...243,845,409
Ensembl chr 1:243,782,246...243,845,250
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Smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
is_active_in
ISO
(PMID:23911928)
RGD
PMID:23911928
NCBI chr19:27,271,918...27,304,594
Ensembl chr19:27,271,148...27,304,594
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Smarcad1
SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1`
located_in
ISO ISS
(PMID:22960744) GO_REF:0000024
RGD UniProt
PMID:22960744
GO_REF:0000024
NCBI chr 4:94,311,441...94,379,184
Ensembl chr 4:94,311,489...94,372,563
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Smarcal1
Swi/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1
located_in
ISS ISO
GO_REF:0000024 (PMID:19793862), (PMID:19793863)
UniProt RGD
PMID:19793862 PMID:19793863
GO_REF:0000024
NCBI chr 9:74,239,718...74,286,156
Ensembl chr 9:74,240,241...74,286,146
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Smc5
structural maintenance of chromosomes 5
located_in
ISO
(PMID:25931565)
RGD
PMID:25931565
NCBI chr 1:220,769,366...220,839,138
Ensembl chr 1:220,769,366...220,839,096
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Smc6
structural maintenance of chromosomes 6
located_in is_active_in
ISO IBA
(PMID:25931565) PMID:21873635
RGD
PMID:25931565 PMID:21873635
RGD:13792537
NCBI chr 6:33,978,730...34,033,201
Ensembl chr 6:33,978,716...34,031,746
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Smchd1
structural maintenance of chromosomes flexible hinge domain containing 1
located_in
ISO
(PMID:24790221), (PMID:25294876)
RGD
PMID:24790221 PMID:25294876
NCBI chr 9:111,243,445...111,387,272
Ensembl chr 9:111,247,702...111,349,665
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Timeless
timeless circadian regulator
located_in
ISO IEA ISS
(PMID:26344098), (PMID:30356214) GO_REF:0000107 GO_REF:0000024
RGD Ensembl UniProt
PMID:26344098 PMID:30356214
GO_REF:0000024 GO_REF:0000107
NCBI chr 7:654,804...678,769
Ensembl chr 7:654,822...678,738
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Tonsl
tonsoku-like, DNA repair protein
is_active_in
ISS ISO
GO_REF:0000024 (PMID:26527279), (PMID:27338793), (PMID:29478807)
UniProt RGD
PMID:26527279 PMID:27338793 PMID:29478807
GO_REF:0000024
NCBI chr 7:108,345,704...108,360,792
Ensembl chr 7:108,346,047...108,360,750
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Tp53
tumor protein p53
located_in
ISO
(MGI:5552986|PMID:24550317)
RGD
PMID:24550317
MGI:5552986
NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
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Tp53bp1
tumor protein p53 binding protein 1
located_in
ISO
(PMID:23333306), (PMID:23760478), (PMID:28241136) (MGI:5476381|PMID:23333305), (MGI:5887191|PMID:23209566)
RGD
PMID:23209566 PMID:23333305 PMID:23333306 PMID:23760478 PMID:28241136
MGI:5476381 MGI:5887191
NCBI chr 3:108,166,574...108,270,229
Ensembl chr 3:108,169,980...108,269,822
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Ufl1
Ufm1-specific ligase 1
located_in
ISO ISS
(PMID:30886146) GO_REF:0000024
RGD UniProt
PMID:30886146
GO_REF:0000024
NCBI chr 5:38,962,721...38,995,134
Ensembl chr 5:38,962,171...38,995,199
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Vcp
valosin-containing protein
located_in
ISO ISS
(PMID:22120668) GO_REF:0000024
RGD UniProt
PMID:22120668
GO_REF:0000024
NCBI chr 5:57,210,167...57,229,571
Ensembl chr 5:57,210,168...57,229,571
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Was
WASP actin nucleation promoting factor
located_in
ISO
(PMID:29925947)
RGD
PMID:29925947
NCBI chr X:14,405,096...14,413,850
Ensembl chr X:14,405,124...14,413,849
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Wdr70
WD repeat domain 70
is_active_in
IBA
PMID:21873635
GO_Central
PMID:21873635
RGD:13792537
NCBI chr 2:56,951,345...57,191,244
Ensembl chr 2:56,951,355...57,191,187
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Wrap53
WD repeat containing, antisense to TP53
located_in
ISO ISS
(PMID:25512560), (PMID:26734725), (PMID:27715493) GO_REF:0000024
RGD UniProt
PMID:25512560 PMID:26734725 PMID:27715493
GO_REF:0000024
NCBI chr10:54,282,092...54,299,908
Ensembl chr10:54,282,105...54,298,929
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Xrcc4
X-ray repair cross complementing 4
located_in part_of is_active_in
ISO
(PMID:31548606) (PMID:27644316) (PMID:26774286), (PMID:27437582), (PMID:28500754)
RGD
PMID:26774286 PMID:27437582 PMID:27644316 PMID:28500754 PMID:31548606
NCBI chr 2:20,948,464...21,197,705
Ensembl chr 2:20,951,200...21,197,808
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Zbtb7a
zinc finger and BTB domain containing 7a
colocalizes_with located_in
ISS IEA ISO
GO_REF:0000024 GO_REF:0000107 (MGI:5702356|PMID:26446488)
UniProt Ensembl RGD
PMID:26446488
GO_REF:0000024 GO_REF:0000107 MGI:5702356
NCBI chr 7:8,561,015...8,578,243
Ensembl chr 7:8,563,779...8,576,539
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