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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA polymerase II transcription regulator complex
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Accession:GO:0090575 term browser browse the term
Definition:A transcription factor complex that acts at a regulatory region of a gene transcribed by RNA polymerase II.
Synonyms:narrow_synonym: RNA polymerase II transcription factor complex


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RNA polymerase II transcription regulator complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07045341.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr20:43,929,592...43,932,361 JBrowse link
G Arnt aryl hydrocarbon receptor nuclear translocator IEA
ISO
GO_REF:0000107
(PMID:7539918), (PMID:8756616)
Ensembl
RGD
PMID:7539918, PMID:8756616 GO_REF:0000107 NCBI chr 2:196,594,178...196,651,486
Ensembl chr 2:196,594,303...196,651,179
JBrowse link
G Ascl1 achaete-scute family bHLH transcription factor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Ascl2 achaete-scute family bHLH transcription factor 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:216,154,002...216,156,409
Ensembl chr 1:216,154,002...216,156,409
JBrowse link
G Ascl4 achaete-scute family bHLH transcription factor 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:23,946,974...23,949,600
Ensembl chr 7:23,947,765...23,948,202
JBrowse link
G Ascl5 achaete-scute family bHLH transcription factor 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:52,887,055...52,888,603
Ensembl chr13:52,887,649...52,888,215
JBrowse link
G Atf4 activating transcription factor 4 ISO (MGI:MGI:5812283|PMID:27812542) RGD PMID:27812542 MGI:MGI:5812283 NCBI chr 7:121,480,723...121,482,781
Ensembl chr 7:121,480,723...121,482,772
JBrowse link
G Atf6b activating transcription factor 6 beta ISO (PMID:11256944) RGD PMID:11256944 NCBI chr20:4,414,283...4,422,283
Ensembl chr20:4,414,276...4,422,283
JBrowse link
G Carm1 coactivator-associated arginine methyltransferase 1 ISO (MGI:MGI:5467164|PMID:22977234) RGD PMID:22977234 MGI:MGI:5467164 NCBI chr 8:22,577,723...22,622,555
Ensembl chr 8:22,577,715...22,622,560
JBrowse link
G Cebpa CCAAT/enhancer binding protein alpha ISO
IEA
(PMID:16946298)
GO_REF:0000107
RGD
Ensembl
PMID:16946298 GO_REF:0000107 NCBI chr 1:91,363,492...91,366,164
Ensembl chr 1:91,363,492...91,366,164
JBrowse link
G Cebpb CCAAT/enhancer binding protein beta ISO (MGI:MGI:5812283|PMID:27812542) RGD PMID:27812542 MGI:MGI:5812283 NCBI chr 3:164,424,502...164,425,933
Ensembl chr 3:164,424,515...164,425,910
JBrowse link
G Crebbp CREB binding protein ISO (MGI:MGI:5467164|PMID:22977234), (MGI:MGI:67494|PMID:7913207) RGD PMID:7913207, PMID:22977234 MGI:MGI:5467164, MGI:MGI:67494 NCBI chr10:11,590,994...11,721,039
Ensembl chr10:11,595,044...11,721,039
JBrowse link
G Ddit3 DNA-damage inducible transcript 3 ISO UniProtKB:P01100|UniProtKB:P15066 (MGI:MGI:5616331|PMID:10523647) RGD PMID:10523647 MGI:MGI:5616331 NCBI chr 7:70,578,564...70,585,074
Ensembl chr 7:70,580,198...70,585,084
JBrowse link
G Deaf1 DEAF1 transcription factor ISO (MGI:MGI:1321453|PMID:9860983) RGD PMID:9860983 MGI:MGI:1321453 NCBI chr 1:214,283,787...214,317,466
Ensembl chr 1:214,283,790...214,317,466
JBrowse link
G Dr1 down-regulator of transcription 1 ISO (PMID:8670811) RGD PMID:8670811 NCBI chr14:2,463,651...2,475,004
Ensembl chr14:2,463,643...2,474,780
JBrowse link
G Drap1 Dr1 associated protein 1 ISO
IEA
(PMID:8670811)
GO_REF:0000107
RGD
Ensembl
PMID:8670811 GO_REF:0000107 NCBI chr 1:220,803,783...220,806,480
Ensembl chr 1:220,803,796...220,806,433
JBrowse link
G E2f1 E2F transcription factor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:150,062,895...150,073,721
Ensembl chr 3:150,047,826...150,073,721
JBrowse link
G E2f2 E2F transcription factor 2 ISO
IBA
(PMID:7739537)
PMID:21873635
RGD PMID:7739537, PMID:21873635 RGD:13792537 NCBI chr 5:154,516,611...154,540,228
Ensembl chr 5:154,522,119...154,540,265
JBrowse link
G E2f3 E2F transcription factor 3 ISO
IBA
(PMID:7739537)
PMID:21873635
RGD PMID:7739537, PMID:21873635 RGD:13792537 NCBI chr17:36,334,136...36,408,831
Ensembl chr17:36,334,147...36,408,831
JBrowse link
G E2f4 E2F transcription factor 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:37,252,828...37,260,239
Ensembl chr19:37,252,843...37,260,239
JBrowse link
G E2f5 E2F transcription factor 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:88,350,764...88,366,913
Ensembl chr 2:88,351,361...88,366,115
JBrowse link
G E2f6 E2F transcription factor 6 ISO
IBA
(PMID:9501179)
PMID:21873635
RGD PMID:9501179, PMID:21873635 RGD:13792537 NCBI chr 6:42,092,513...42,108,692
Ensembl chr 6:42,092,467...42,108,702
JBrowse link
G E2f7 E2F transcription factor 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:53,275,659...53,318,261
Ensembl chr 7:53,275,676...53,316,481
JBrowse link
G E2f8 E2F transcription factor 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:104,185,436...104,203,683
Ensembl chr 1:104,187,100...104,202,591
JBrowse link
G Gata4 GATA binding protein 4 ISO (PMID:9312027) RGD PMID:9312027 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965
JBrowse link
G Gtf2b general transcription factor IIB ISO (PMID:1876184), (PMID:3029109), (PMID:7601352) RGD PMID:1876184, PMID:3029109, PMID:7601352 NCBI chr 2:248,709,433...248,727,741
Ensembl chr 2:248,715,281...248,727,741
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 ISO (PMID:11802795) RGD PMID:11802795 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha IEA
ISO
GO_REF:0000107
(PMID:7539918), (PMID:8756616)
Ensembl
RGD
PMID:7539918, PMID:8756616 GO_REF:0000107 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:MGI:5306308|PMID:16407227) RGD PMID:16407227 MGI:MGI:5306308 NCBI chr 4:66,438,390...66,625,183
Ensembl chr 4:66,445,266...66,624,912
JBrowse link
G Hmga1 high mobility group AT-hook 1 ISO (MGI:MGI:5644022|PMID:19389484) RGD PMID:19389484 MGI:MGI:5644022 NCBI chr20:7,132,501...7,140,155
Ensembl chr20:7,136,007...7,138,980
JBrowse link
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B ISO
ISS
(MGI:MGI:3698386|PMID:17273560)
GO_REF:0000024
RGD
BHF-UCL
PMID:17273560 GO_REF:0000024, MGI:MGI:3698386 NCBI chr10:34,955,713...34,961,662
Ensembl chr10:34,955,716...34,961,608
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U colocalizes_with IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:10490622)
Ensembl
RGD
PMID:10490622, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr13:96,222,093...96,238,845
Ensembl chr13:96,225,912...96,238,572
JBrowse link
G Hoxb9 homeo box B9 ISO (MGI:MGI:86817|PMID:9079637) RGD PMID:9079637 MGI:MGI:86817 NCBI chr10:84,119,772...84,124,963
Ensembl chr10:84,119,884...84,123,390
JBrowse link
G Hyal2 hyaluronidase 2 ISO
IEA
(MGI:MGI:3851310|PMID:19366691)
GO_REF:0000107
RGD
Ensembl
PMID:19366691 GO_REF:0000107, MGI:MGI:3851310 NCBI chr 8:116,324,062...116,328,978
Ensembl chr 8:116,324,040...116,328,978
JBrowse link
G Ldb1 LIM domain binding 1 ISO (MGI:MGI:1321453|PMID:9860983) RGD PMID:9860983 MGI:MGI:1321453 NCBI chr 1:265,772,729...265,798,442
Ensembl chr 1:265,785,409...265,798,167
JBrowse link
G Lmo4 LIM domain only 4 ISO (MGI:MGI:1321453|PMID:9860983), (MGI:MGI:3840011|PMID:19323994) RGD PMID:9860983, PMID:19323994 MGI:MGI:1321453, MGI:MGI:3840011 NCBI chr 2:250,218,635...250,235,435
Ensembl chr 2:250,218,641...250,241,673
JBrowse link
G LOC103689931 heterogeneous nuclear ribonucleoprotein A/B ISS GO_REF:0000024 BHF-UCL GO_REF:0000024 NCBI chr10:37,049,400...37,055,348
Ensembl chr10:37,049,677...37,055,282
Ensembl chr10:37,049,677...37,055,282
JBrowse link
G Max MYC associated factor X ISO
IEA
IBA
(PMID:8425219), (PMID:8521822)
GO_REF:0000002
PMID:21873635
RGD
InterPro
PMID:8425219, PMID:8521822, PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 6:99,984,260...100,011,460
Ensembl chr 6:99,984,260...100,011,388
JBrowse link
G Mxd3 Max dimerization protein 3 ISO (MGI:MGI:77472|PMID:8521822) RGD PMID:8521822 MGI:MGI:77472 NCBI chr17:9,830,326...9,834,052
Ensembl chr17:9,830,332...9,839,452
JBrowse link
G Mxd4 Max dimerization protein 4 ISO (MGI:MGI:77472|PMID:8521822) RGD PMID:8521822 MGI:MGI:77472 NCBI chr14:81,819,415...81,833,456
Ensembl chr14:81,819,415...81,833,456
JBrowse link
G Mxi1 MAX interactor 1, dimerization protein IEA
ISO
GO_REF:0000107
(PMID:8425219)
Ensembl
RGD
PMID:8425219 GO_REF:0000107 NCBI chr 1:274,030,748...274,090,071
Ensembl chr 1:274,030,978...274,090,071
JBrowse link
G Ncoa3 nuclear receptor coactivator 3 ISO (MGI:MGI:5467164|PMID:22977234) RGD PMID:22977234 MGI:MGI:5467164 NCBI chr 3:162,692,176...162,788,582
Ensembl chr 3:162,692,185...162,787,548
JBrowse link
G Neurod1 neuronal differentiation 1 ISO (PMID:10545951) RGD PMID:10545951 NCBI chr 3:66,414,314...66,417,617
Ensembl chr 3:66,414,308...66,417,741
JBrowse link
G Nfya nuclear transcription factor Y subunit alpha ISO (PMID:11256944) RGD PMID:11256944 NCBI chr 9:14,551,752...14,577,002
Ensembl chr 9:14,551,758...14,576,967
JBrowse link
G Nfyb nuclear transcription factor Y subunit beta ISO (PMID:11256944) RGD PMID:11256944 NCBI chr 7:27,081,667...27,097,481
Ensembl chr 7:27,081,667...27,097,479
JBrowse link
G Nfyc nuclear transcription factor Y subunit gamma ISO (PMID:11256944) RGD PMID:11256944 NCBI chr 5:139,687,442...139,760,154
Ensembl chr 5:139,687,448...139,749,050
JBrowse link
G Nkx2-5 NK2 homeobox 5 ISO
IEA
(PMID:9312027)
GO_REF:0000107
RGD
Ensembl
PMID:9312027 GO_REF:0000107 NCBI chr10:16,635,989...16,638,758
Ensembl chr10:16,635,989...16,638,764
JBrowse link
G Nono non-POU domain containing, octamer-binding ISO (MGI:MGI:5644022|PMID:19389484) RGD PMID:19389484 MGI:MGI:5644022 NCBI chr  X:71,324,365...71,342,225
Ensembl chr  X:71,324,365...71,342,225
JBrowse link
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 ISO
IEA
(PMID:18511497)
GO_REF:0000107
(MGI:MGI:4399016|PMID:17107947)
RGD
Ensembl
PMID:17107947, PMID:18511497 GO_REF:0000107, MGI:MGI:4399016 NCBI chr 3:80,004,130...80,014,197
Ensembl chr 3:80,004,130...80,012,750
JBrowse link
G Nr5a1 nuclear receptor subfamily 5, group A, member 1 ISO
IBA
(MGI:MGI:5644022|PMID:19389484)
PMID:21873635
RGD PMID:19389484, PMID:21873635 MGI:MGI:5644022, RGD:13792537 NCBI chr 3:22,998,900...23,020,441
Ensembl chr 3:22,999,616...23,020,441
JBrowse link
G Nr5a2 nuclear receptor subfamily 5, group A, member 2 ISO
IBA
(MGI:MGI:5644022|PMID:19389484)
PMID:21873635
RGD PMID:19389484, PMID:21873635 MGI:MGI:5644022, RGD:13792537 NCBI chr13:53,750,470...53,870,288
Ensembl chr13:53,750,473...53,870,428
JBrowse link
G Pbx1 PBX homeobox 1 ISO (PMID:9079637) RGD PMID:9079637 NCBI chr13:86,390,741...86,671,460
Ensembl chr13:86,390,741...86,451,002
JBrowse link
G Pou2af1 POU class 2 homeobox associating factor 1 ISO
IBA
(PMID:10329190), (PMID:11380252)
PMID:21873635
RGD PMID:10329190, PMID:11380252, PMID:21873635 RGD:13792537 NCBI chr 8:55,603,968...55,631,448
Ensembl chr 8:55,603,968...55,631,446
JBrowse link
G Pou2f1 POU class 2 homeobox 1 IEA
ISO
GO_REF:0000107
(PMID:10329190), (PMID:11380252)
Ensembl
RGD
PMID:10329190, PMID:11380252 GO_REF:0000107 NCBI chr13:84,075,316...84,217,368
Ensembl chr13:84,083,632...84,217,366
JBrowse link
G Pou4f1 POU class 4 homeobox 1 IEA
ISO
GO_REF:0000107
(MGI:MGI:6355477|PMID:10329733)
Ensembl
RGD
PMID:10329733 GO_REF:0000107, MGI:MGI:6355477 NCBI chr15:88,618,255...88,622,712
Ensembl chr15:88,620,470...88,622,413
JBrowse link
G Pparg peroxisome proliferator-activated receptor gamma ISO (PMID:9568716) RGD PMID:9568716 NCBI chr 4:147,274,055...147,399,383
Ensembl chr 4:147,274,107...147,399,380
JBrowse link
G Rxra retinoid X receptor alpha ISO
IBA
IEA
(MGI:MGI:4399016|PMID:17107947)
PMID:21873635
(PMID:17426122), (PMID:18511497)
GO_REF:0000107
RGD
Ensembl
PMID:17107947, PMID:17426122, PMID:18511497, PMID:21873635 GO_REF:0000107, MGI:MGI:4399016, RGD:13792537 NCBI chr 3:6,272,560...6,295,354
Ensembl chr 3:6,211,789...6,295,908
JBrowse link
G Rxrb retinoid X receptor beta IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:3,822,673...3,829,138
Ensembl chr20:3,823,042...3,829,140
JBrowse link
G Rxrg retinoid X receptor gamma IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:85,818,473...85,868,555
Ensembl chr13:85,818,427...85,868,552
JBrowse link
G Sfpq splicing factor proline and glutamine rich ISO (MGI:MGI:5644022|PMID:19389484) RGD PMID:19389484 MGI:MGI:5644022 NCBI chr 5:145,079,803...145,088,517
Ensembl chr 5:145,079,803...145,088,498
JBrowse link
G Smad4 SMAD family member 4 ISO (MGI:MGI:3851310|PMID:19366691) RGD PMID:19366691 MGI:MGI:3851310 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
G Stat3 signal transducer and activator of transcription 3 ISO (PMID:16946298) RGD PMID:16946298 NCBI chr10:88,790,401...88,842,263
Ensembl chr10:88,790,408...88,842,233
JBrowse link
G Tcf12 transcription factor 12 ISO (PMID:11802795) RGD PMID:11802795 NCBI chr 8:78,343,634...78,657,738
Ensembl chr 8:78,345,754...78,655,856
JBrowse link
G Tcf15 transcription factor 15 ISO (MGI:MGI:3818123|PMID:18361414) RGD PMID:18361414 MGI:MGI:3818123 NCBI chr 3:147,643,250...147,649,511
Ensembl chr 3:147,643,250...147,649,504
JBrowse link
G Tcf3 transcription factor 3 IEA
ISO
GO_REF:0000107
(PMID:10545951), (PMID:11802795)
(MGI:MGI:3818123|PMID:18361414)
Ensembl
RGD
PMID:10545951, PMID:11802795, PMID:18361414 GO_REF:0000107, MGI:MGI:3818123 NCBI chr 7:12,146,642...12,168,400
Ensembl chr 7:12,144,162...12,168,410
JBrowse link
G Tfdp1 transcription factor Dp-1 ISO (PMID:7739537) RGD PMID:7739537 NCBI chr16:81,088,642...81,127,244
Ensembl chr16:81,089,292...81,127,257
JBrowse link
G Tfdp2 transcription factor Dp-2 ISO (PMID:7739537), (PMID:9501179) RGD PMID:7739537, PMID:9501179 NCBI chr 8:104,040,795...104,181,228
Ensembl chr 8:104,040,934...104,176,446
JBrowse link
G Tp53 tumor protein p53 IDA PMID:10329733 ARUK-UCL PMID:10329733 RGD:14697712 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
G Trim28 tripartite motif-containing 28 ISO
IBA
ISS
(MGI:MGI:3698386|PMID:17273560)
PMID:21873635
GO_REF:0000024
RGD
BHF-UCL
PMID:17273560, PMID:21873635 GO_REF:0000024, MGI:MGI:3698386, RGD:13792537 NCBI chr 1:65,544,369...65,551,043
Ensembl chr 1:65,544,373...65,551,043
JBrowse link
G Vdr vitamin D receptor ISO
IEA
(PMID:17426122)
GO_REF:0000107
RGD
Ensembl
PMID:17426122 GO_REF:0000107 NCBI chr 7:139,344,452...139,394,138
Ensembl chr 7:139,342,063...139,394,166
JBrowse link
G Wwox WW domain-containing oxidoreductase ISO (MGI:MGI:3851310|PMID:19366691) RGD PMID:19366691 MGI:MGI:3851310 NCBI chr19:46,761,353...47,695,247 JBrowse link
activating signal cointegrator 1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascc2 activating signal cointegrator 1 complex subunit 2 ISO (PMID:12077347) RGD PMID:12077347 NCBI chr14:84,873,507...84,913,923
Ensembl chr14:84,876,781...84,913,617
JBrowse link
G Ascc3 activating signal cointegrator 1 complex subunit 3 IEA
ISO
GO_REF:0000107
(PMID:12077347)
Ensembl
RGD
PMID:12077347 GO_REF:0000107 NCBI chr20:55,253,670...55,557,249
Ensembl chr20:55,253,686...55,556,473
JBrowse link
G Trip4 thyroid hormone receptor interactor 4 ISO (PMID:12077347) RGD PMID:12077347 NCBI chr 8:71,369,121...71,533,281
Ensembl chr 8:71,371,370...71,533,459
JBrowse link
activin responsive factor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxh1 forkhead box H1 ISO
IBA
(PMID:9389648)
PMID:21873635
(MGI:MGI:1321467|PMID:9858566), (MGI:MGI:1328655|PMID:10349617)
RGD PMID:9389648, PMID:9858566, PMID:10349617, PMID:21873635 MGI:MGI:1321467, MGI:MGI:1328655, RGD:13792537 NCBI chr 7:117,730,307...117,733,076
Ensembl chr 7:117,730,307...117,732,387
JBrowse link
G Smad2 SMAD family member 2 ISO (PMID:9389648) RGD PMID:9389648 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078
JBrowse link
G Smad4 SMAD family member 4 ISO
IEA
(PMID:9389648)
GO_REF:0000107
RGD
Ensembl
PMID:9389648 GO_REF:0000107 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
ATF1-ATF4 transcription factor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf1 activating transcription factor 1 ISO (PMID:12871976)
(MGI:MGI:5613480|PMID:12871976)
RGD PMID:12871976 MGI:MGI:5613480 NCBI chr 7:141,882,261...141,924,790
Ensembl chr 7:141,882,251...141,924,788
JBrowse link
G Atf4 activating transcription factor 4 ISO (PMID:12871976)
(MGI:MGI:5613480|PMID:12871976)
RGD PMID:12871976 MGI:MGI:5613480 NCBI chr 7:121,480,723...121,482,781
Ensembl chr 7:121,480,723...121,482,772
JBrowse link
ATF4-CREB1 transcription factor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf4 activating transcription factor 4 ISO (PMID:12871976)
(MGI:MGI:5613480|PMID:12871976)
RGD PMID:12871976 MGI:MGI:5613480 NCBI chr 7:121,480,723...121,482,781
Ensembl chr 7:121,480,723...121,482,772
JBrowse link
G Creb1 cAMP responsive element binding protein 1 ISO (PMID:12871976)
(MGI:MGI:5613480|PMID:12871976)
RGD PMID:12871976 MGI:MGI:5613480 NCBI chr 9:71,229,753...71,298,994
Ensembl chr 9:71,230,108...71,293,435
JBrowse link
beta-catenin-TCF complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl9 BCL9, transcription coactivator ISO
IBA
UniProtKB:P15884|UniProtKB:P35222 (PMID:11955446), (PMID:28296634)
PMID:21873635
RGD PMID:11955446, PMID:28296634, PMID:21873635 RGD:13792537 NCBI chr 2:199,334,644...199,420,083
Ensembl chr 2:199,334,664...199,354,793
JBrowse link
G Bcl9l BCL9 like ISO
IBA
(PMID:28296634)
PMID:21873635
RGD PMID:28296634, PMID:21873635 RGD:13792537 NCBI chr 8:48,805,684...48,835,794
Ensembl chr 8:48,805,684...48,834,312
JBrowse link
G Ctnnb1 catenin beta 1 ISO UniProtKB:O00512|UniProtKB:P15884|UniProtKB:Q9UJU2 (PMID:11955446), (PMID:18936100), (PMID:28296634)
(MGI:MGI:1196720|PMID:9488439), (MGI:MGI:4836133|PMID:20371816)
RGD PMID:9488439, PMID:11955446, PMID:18936100, PMID:20371816, PMID:28296634 MGI:MGI:1196720, MGI:MGI:4836133 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Ldb1 LIM domain binding 1 ISO (PMID:28296634) RGD PMID:28296634 NCBI chr 1:265,772,729...265,798,442
Ensembl chr 1:265,785,409...265,798,167
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 ISO
IEA
UniProtKB:P35222 (PMID:18936100)
GO_REF:0000107
(MGI:MGI:4836133|PMID:20371816)
RGD
Ensembl
PMID:18936100, PMID:20371816 GO_REF:0000107, MGI:MGI:4836133 NCBI chr 2:236,232,115...236,345,061
Ensembl chr 2:236,233,239...236,345,056
JBrowse link
G Pygo2 pygopus family PHD finger 2 ISO (PMID:28296634) RGD PMID:28296634 NCBI chr 2:188,757,167...188,762,285
Ensembl chr 2:188,757,489...188,762,282
JBrowse link
G Tcf4 transcription factor 4 ISO UniProtKB:O00512|UniProtKB:P35222 (PMID:11955446) RGD PMID:11955446 NCBI chr18:65,285,320...65,507,983
Ensembl chr18:65,155,685...65,507,977
JBrowse link
G Tle1 TLE family member 1, transcriptional corepressor ISO (PMID:28296634) RGD PMID:28296634 NCBI chr 5:88,546,607...88,630,277
Ensembl chr 5:88,546,568...88,629,491
JBrowse link
G Tle3 TLE family member 3, transcriptional corepressor ISO (PMID:28296634) RGD PMID:28296634 NCBI chr 8:66,296,509...66,342,186
Ensembl chr 8:66,296,883...66,342,176
JBrowse link
G Tle4 TLE family member 4, transcriptional corepressor IEA
ISO
GO_REF:0000107
(PMID:28296634)
Ensembl
RGD
PMID:28296634 GO_REF:0000107 NCBI chr 1:231,394,606...231,531,396
Ensembl chr 1:231,393,379...231,530,786
JBrowse link
beta-catenin-TCF7L2 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:12651860), (PMID:9065401), (PMID:9065402)
UniProt
Ensembl
RGD
PMID:9065401, PMID:9065402, PMID:12651860 GO_REF:0000024, GO_REF:0000107 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372
JBrowse link
G Tcf4 transcription factor 4 ISO (PMID:12651860) RGD PMID:12651860 NCBI chr18:65,285,320...65,507,983
Ensembl chr18:65,155,685...65,507,977
JBrowse link
G Tcf7l2 transcription factor 7 like 2 ISO (PMID:9065401), (PMID:9065402) RGD PMID:9065401, PMID:9065402 NCBI chr 1:276,686,911...276,730,517
Ensembl chr 1:276,659,542...276,730,514
Ensembl chr 1:276,659,542...276,730,514
JBrowse link
CCAAT-binding factor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ing2 inhibitor of growth family, member 2 ISO (PMID:15243141) RGD PMID:15243141 NCBI chr16:47,714,756...47,725,836
Ensembl chr16:47,717,951...47,725,836
JBrowse link
G Nfya nuclear transcription factor Y subunit alpha IDA
IBA
ISO
IEA
PMID:21873635
(PMID:15243141)
GO_REF:0000107
RGD
Ensembl
PMID:15243141, PMID:7878029, PMID:21873635 GO_REF:0000107, RGD:729287, RGD:13792537 NCBI chr 9:14,551,752...14,577,002
Ensembl chr 9:14,551,758...14,576,967
JBrowse link
G Nfyb nuclear transcription factor Y subunit beta IDA
IBA
ISO
PMID:21873635
(PMID:15243141)
RGD PMID:15243141, PMID:7878029, PMID:21873635 RGD:729287, RGD:13792537 NCBI chr 7:27,081,667...27,097,481
Ensembl chr 7:27,081,667...27,097,479
JBrowse link
G Nfyc nuclear transcription factor Y subunit gamma IDA
IBA
ISO
PMID:21873635
(PMID:15243141)
RGD PMID:15243141, PMID:7878029, PMID:21873635 RGD:729287, RGD:13792537 NCBI chr 5:139,687,442...139,760,154
Ensembl chr 5:139,687,448...139,749,050
JBrowse link
CHOP-ATF4 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf4 activating transcription factor 4 ISO UniProtKB:P35638 (PMID:11478948), (PMID:18940792) RGD PMID:11478948, PMID:18940792 NCBI chr 7:121,480,723...121,482,781
Ensembl chr 7:121,480,723...121,482,772
JBrowse link
G Ddit3 DNA-damage inducible transcript 3 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
UniProtKB:P18848 (PMID:11478948), (PMID:18940792)
Ensembl
RGD
PMID:11478948, PMID:18940792, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 7:70,578,564...70,585,074
Ensembl chr 7:70,580,198...70,585,084
JBrowse link
CHOP-C/EBP complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cebpa CCAAT/enhancer binding protein alpha IPI PMID:8657121 ParkinsonsUK-UCL PMID:8657121 RGD:1599740 NCBI chr 1:91,363,492...91,366,164
Ensembl chr 1:91,363,492...91,366,164
JBrowse link
G Cebpb CCAAT/enhancer binding protein beta IPI PMID:1547942 ParkinsonsUK-UCL PMID:1547942 RGD:10047202 NCBI chr 3:164,424,502...164,425,933
Ensembl chr 3:164,424,515...164,425,910
JBrowse link
G Ddit3 DNA-damage inducible transcript 3 IPI
IBA
IEA
ISO
PMID:8657121
PMID:21873635
GO_REF:0000107
UniProtKB:P21272 (MGI:MGI:85669|PMID:1547942)
Ensembl
RGD
PMID:1547942, PMID:8657121, PMID:21873635 GO_REF:0000107, MGI:MGI:85669, RGD:1599740, RGD:13792537 NCBI chr 7:70,578,564...70,585,074
Ensembl chr 7:70,580,198...70,585,084
JBrowse link
CLOCK-BMAL transcription complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clock clock circadian regulator IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:34,418,226...34,502,218
Ensembl chr14:34,446,616...34,502,218
JBrowse link
G Npas2 neuronal PAS domain protein 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:45,901,262...46,081,880
Ensembl chr 9:45,901,741...46,081,880
JBrowse link
core mediator complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Med14 mediator complex subunit 14 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:10,964,035...11,082,403
Ensembl chr  X:10,963,809...11,082,565
JBrowse link
G Med17 mediator complex subunit 17 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:13,522,257...13,835,302
Ensembl chr 8:13,819,563...13,835,168
JBrowse link
G Med18 mediator complex subunit 18 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:150,649,136...150,654,123
Ensembl chr 5:150,649,829...150,653,172
JBrowse link
G Med26 mediator complex subunit 26 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:19,001,061...19,050,874
Ensembl chr16:19,001,061...19,050,874
JBrowse link
G Med31 mediator complex subunit 31 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:58,780,987...58,784,369
Ensembl chr10:58,780,597...58,784,374
JBrowse link
G Med4 mediator complex subunit 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:55,406,543...55,416,816
Ensembl chr15:55,406,543...55,416,815
JBrowse link
G Med6 mediator complex subunit 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:105,302,558...105,316,024
Ensembl chr 6:105,302,558...105,316,024
JBrowse link
core TFIIH complex portion of holo TFIIH complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2h2 general transcription factor IIH subunit 2 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 2:30,494,718...30,522,716
Ensembl chr 2:30,494,825...30,522,727
JBrowse link
G Gtf2h3 general transcription factor IIH subunit 3 ISO
ISS
(PMID:27193682)
GO_REF:0000024
RGD
UniProt
PMID:27193682 GO_REF:0000024 NCBI chr12:37,427,556...37,444,027
Ensembl chr12:37,427,546...37,444,282
JBrowse link
G Gtf2h4 general transcription factor 2H subunit 4 ISO (PMID:27193682) RGD PMID:27193682 NCBI chr20:3,582,688...3,588,373
Ensembl chr20:3,582,742...3,588,375
JBrowse link
core-binding factor complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbfb core-binding factor subunit beta IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:37,127,508...37,171,075
Ensembl chr19:37,127,508...37,171,069
JBrowse link
G Runx1 RUNX family transcription factor 1 TAS PMID:18258917 UniProt PMID:18258917 RGD:13524617 NCBI chr11:32,765,147...33,003,061
Ensembl chr11:32,769,165...33,003,021
JBrowse link
heteromeric SMAD protein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smad1 SMAD family member 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr19:32,182,942...32,248,694
Ensembl chr19:32,188,267...32,248,684
JBrowse link
G Smad2 SMAD family member 2 ISO
IBA
(PMID:21828274)
PMID:21873635
RGD PMID:21828274, PMID:21873635 RGD:13792537 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078
JBrowse link
G Smad3 SMAD family member 3 ISO
IBA
(PMID:21828274)
PMID:21873635
RGD PMID:21828274, PMID:21873635 RGD:13792537 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349
JBrowse link
G Smad4 SMAD family member 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
G Smad5 SMAD family member 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:8,307,448...8,336,996
Ensembl chr17:8,311,796...8,331,032
JBrowse link
G Smad6 SMAD family member 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:68,897,746...68,967,221
Ensembl chr 8:68,898,296...68,966,108
JBrowse link
G Smad7 SMAD family member 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:71,395,830...71,424,164
Ensembl chr18:71,395,830...71,424,157
JBrowse link
G Smad9 SMAD family member 9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:143,951,725...144,002,025
Ensembl chr 2:144,191,846...144,212,138
Ensembl chr 2:144,191,846...144,212,138
JBrowse link
Rb-E2F complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cebpa CCAAT/enhancer binding protein alpha IDA RGD PMID:16172914 RGD:1625368 NCBI chr 1:91,363,492...91,366,164
Ensembl chr 1:91,363,492...91,366,164
JBrowse link
G E2f1 E2F transcription factor 1 ISO (PMID:20224733) RGD PMID:20224733 NCBI chr 3:150,062,895...150,073,721
Ensembl chr 3:150,047,826...150,073,721
JBrowse link
G Rb1 RB transcriptional corepressor 1 IEA
ISO
ISS
IBA
GO_REF:0000107
(MGI:MGI:5285162|PMID:20224733), (MGI:MGI:6368297|PMID:8336704)
GO_REF:0000024
PMID:21873635
(PMID:8245034)
Ensembl
RGD
UniProt
PMID:8245034, PMID:8336704, PMID:20224733, PMID:21873635 GO_REF:0000024, GO_REF:0000107, MGI:MGI:5285162, MGI:MGI:6368297, RGD:13792537 NCBI chr15:55,081,582...55,209,060
Ensembl chr15:55,083,140...55,209,342
JBrowse link
SMN-Gemin2 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gemin5 gem (nuclear organelle) associated protein 5 ISO (PMID:19377484) RGD PMID:19377484 NCBI chr10:43,552,260...43,599,241
Ensembl chr10:43,554,046...43,599,232
JBrowse link
TEAD-1-YAP complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tead1 TEA domain transcription factor 1 ISO (PMID:20123905) RGD PMID:20123905 NCBI chr 1:177,495,500...177,714,795
Ensembl chr 1:177,495,782...177,707,061
JBrowse link
G Yap1 Yes1 associated transcriptional regulator ISO (PMID:20123905) RGD PMID:20123905 NCBI chr 8:6,133,014...6,204,240
Ensembl chr 8:6,135,493...6,203,579
JBrowse link
TEAD-2-YAP complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tead2 TEA domain transcription factor 2 ISO (PMID:20368466) RGD PMID:20368466 NCBI chr 1:101,213,782...101,230,483
Ensembl chr 1:101,213,788...101,230,477
JBrowse link
G Yap1 Yes1 associated transcriptional regulator ISO (PMID:20368466) RGD PMID:20368466 NCBI chr 8:6,133,014...6,204,240
Ensembl chr 8:6,135,493...6,203,579
JBrowse link
transcription factor AP-1 complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fos Fos proto-oncogene, AP-1 transcription factor subunit ISO (PMID:10508860), (PMID:26514923) RGD PMID:10508860, PMID:26514923 NCBI chr 6:109,300,433...109,303,299
Ensembl chr 6:109,300,433...109,303,299
JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit ISO (PMID:10508860), (PMID:26514923) RGD PMID:10508860, PMID:26514923 NCBI chr 5:114,011,184...114,014,277
Ensembl chr 5:114,011,189...114,014,277
JBrowse link
G Junb JunB proto-oncogene, AP-1 transcription factor subunit IEA
ISO
GO_REF:0000107
(PMID:10508860)
Ensembl
RGD
PMID:10508860 GO_REF:0000107 NCBI chr19:26,092,972...26,094,756
Ensembl chr19:26,092,974...26,094,756
JBrowse link
G Jund JunD proto-oncogene, AP-1 transcription factor subunit ISO (PMID:10508860) RGD PMID:10508860 NCBI chr16:20,485,028...20,486,707
Ensembl chr16:20,485,029...20,486,707
JBrowse link
transcription factor TFIIA complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2a1 general transcription factor 2A subunit 1 ISO
IBA
(PMID:7724559)
PMID:21873635
(MGI:MGI:3583836|PMID:15927180)
RGD PMID:7724559, PMID:15927180, PMID:21873635 MGI:MGI:3583836, RGD:13792537 NCBI chr 6:115,321,110...115,352,659
Ensembl chr 6:115,320,467...115,352,681
JBrowse link
G Gtf2a1l general transcription factor 2A subunit 1 like ISO
IBA
(MGI:MGI:3583836|PMID:15927180)
PMID:21873635
RGD PMID:15927180, PMID:21873635 MGI:MGI:3583836, RGD:13792537 NCBI chr 6:12,412,198...12,468,613
Ensembl chr 6:12,415,805...12,468,596
JBrowse link
G Gtf2a2 general transcription factor 2A subunit 2 IEA
IBA
ISO
GO_REF:0000002
PMID:21873635
(PMID:7724559), (PMID:7958899), (PMID:7958900)
InterPro
RGD
PMID:7724559, PMID:7958899, PMID:7958900, PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 8:76,422,341...76,435,587
Ensembl chr 8:76,422,359...76,435,473
JBrowse link
G LOC103695118 transcription initiation factor IIA subunit 2 IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 Ensembl chr 8:76,422,359...76,435,473 JBrowse link
G Tbp TATA box binding protein ISO (PMID:7724559) RGD PMID:7724559 NCBI chr 1:57,491,381...57,509,335
Ensembl chr 1:57,491,643...57,508,449
JBrowse link
G Tbpl1 TATA-box binding protein like 1 ISO (MGI:MGI:3583836|PMID:15927180) RGD PMID:15927180 MGI:MGI:3583836 NCBI chr 1:23,977,154...24,002,512
Ensembl chr 1:23,977,688...24,002,506
JBrowse link
transcription factor TFIID complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063323.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:28,557,633...28,557,848 JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO (PMID:27193682) RGD PMID:27193682 NCBI chr 1:80,293,574...80,307,334
Ensembl chr 1:80,293,566...80,307,344
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit ISO (PMID:27193682) RGD PMID:27193682 NCBI chr18:25,037,668...25,068,380
Ensembl chr18:25,037,625...25,068,389
JBrowse link
G Gtf2a1 general transcription factor 2A subunit 1 ISO (PMID:27193682) RGD PMID:27193682 NCBI chr 6:115,321,110...115,352,659
Ensembl chr 6:115,320,467...115,352,681
JBrowse link
G Gtf2a2 general transcription factor 2A subunit 2 ISO (PMID:27193682) RGD PMID:27193682 NCBI chr 8:76,422,341...76,435,587
Ensembl chr 8:76,422,359...76,435,473
JBrowse link
G Gtf2b general transcription factor IIB IEA
ISO
GO_REF:0000107
(PMID:27193682)
Ensembl
RGD
PMID:27193682 GO_REF:0000107 NCBI chr 2:248,709,433...248,727,741
Ensembl chr 2:248,715,281...248,727,741
JBrowse link
G Gtf2e1 general transcription factor IIE subunit 1 ISO (PMID:27193682) RGD PMID:27193682 NCBI chr11:66,078,786...66,111,394
Ensembl chr11:66,078,820...66,110,848
JBrowse link
G Gtf2e2 general transcription factor IIE subunit 2 ISO (PMID:27193682) RGD PMID:27193682 NCBI chr16:62,113,846...62,164,339
Ensembl chr16:62,113,854...62,164,135
JBrowse link
G Gtf2f1 general transcription factor IIF subunit 1 ISO (PMID:27193682) RGD PMID:27193682 NCBI chr 9:10,032,806...10,042,392
Ensembl chr 9:10,033,011...10,042,418
JBrowse link
G Gtf2h3 general transcription factor IIH subunit 3 ISO (PMID:27193682) RGD PMID:27193682 NCBI chr12:37,427,556...37,444,027
Ensembl chr12:37,427,546...37,444,282
JBrowse link
G Gtf2h4 general transcription factor 2H subunit 4 ISO (PMID:27193682) RGD PMID:27193682 NCBI chr20:3,582,688...3,588,373
Ensembl chr20:3,582,742...3,588,375
JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 ISO
IBA
(PMID:27193682)
PMID:21873635
RGD PMID:27193682, PMID:21873635 RGD:13792537 NCBI chr 1:46,978,345...46,985,032
Ensembl chr 1:46,978,458...46,985,032
JBrowse link
G Taf1 TATA-box binding protein associated factor 1 ISO (PMID:14580349), (PMID:24927529), (PMID:25412659), (PMID:27007846), (PMID:29111974), (PMID:8625415) RGD PMID:8625415, PMID:14580349, PMID:24927529, PMID:25412659, PMID:27007846, PMID:29111974 NCBI chr  X:71,412,291...71,486,456
Ensembl chr  X:71,412,289...71,485,085
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 ISO (PMID:14580349), (PMID:15099517), (PMID:29111974), (PMID:7729427), (PMID:7923369) RGD PMID:7729427, PMID:7923369, PMID:14580349, PMID:15099517, PMID:29111974 NCBI chr 1:170,585,160...170,586,428
Ensembl chr 1:170,585,167...170,586,603
JBrowse link
G Taf11 TATA-box binding protein associated factor 11 IBA
ISO
PMID:21873635
(PMID:14580349), (PMID:29111974), (PMID:7729427), (PMID:8670810)
RGD PMID:7729427, PMID:8670810, PMID:14580349, PMID:29111974, PMID:21873635 RGD:13792537 NCBI chr20:7,476,648...7,484,417
Ensembl chr20:7,476,651...7,482,747
JBrowse link
G Taf12 TATA-box binding protein associated factor 12 IBA
ISO
PMID:21873635
(PMID:14580349), (PMID:29111974)
RGD PMID:14580349, PMID:29111974, PMID:21873635 RGD:13792537 NCBI chr 5:150,459,701...150,476,521
Ensembl chr 5:150,459,713...150,475,186
JBrowse link
G Taf13 TATA-box binding protein associated factor 13 ISO
IBA
(PMID:29111974), (PMID:7729427)
PMID:21873635
RGD PMID:7729427, PMID:29111974, PMID:21873635 RGD:13792537 NCBI chr 2:211,359,623...211,370,285
Ensembl chr 2:211,359,623...211,370,284
JBrowse link
G Taf2 TATA-box binding protein associated factor 2 IBA
ISO
PMID:21873635
(PMID:10409744), (PMID:14580349), (PMID:27007846), (PMID:29111974), (PMID:9774672)
RGD PMID:9774672, PMID:10409744, PMID:14580349, PMID:27007846, PMID:29111974, PMID:21873635 RGD:13792537 NCBI chr 7:94,698,987...94,755,924
Ensembl chr 7:94,698,987...94,755,924
JBrowse link
G Taf3 TATA-box binding protein associated factor 3 ISO (PMID:11438666), (PMID:29111974) RGD PMID:11438666, PMID:29111974 NCBI chr17:72,240,785...72,393,448
Ensembl chr17:72,209,373...72,394,271
JBrowse link
G Taf4 TATA-box binding protein associated factor 4 ISO
IBA
(PMID:14580349), (PMID:29111974)
PMID:21873635
RGD PMID:14580349, PMID:29111974, PMID:21873635 RGD:13792537 NCBI chr 3:175,300,842...175,364,655
Ensembl chr 3:175,301,879...175,327,689
JBrowse link
G Taf4b TATA-box binding protein associated factor 4b ISO
IBA
(PMID:29111974)
PMID:21873635
RGD PMID:29111974, PMID:21873635 RGD:13792537 NCBI chr18:6,206,939...6,338,794
Ensembl chr18:6,207,280...6,318,219
JBrowse link
G Taf5 TATA-box binding protein associated factor 5 IBA
ISO
PMID:21873635
(PMID:14580349), (PMID:29111974), (PMID:9045704)
RGD PMID:9045704, PMID:14580349, PMID:29111974, PMID:21873635 RGD:13792537 NCBI chr 1:266,844,480...266,859,965
Ensembl chr 1:266,844,480...266,859,965
JBrowse link
G Taf6 TATA-box binding protein associated factor 6 IEA
IBA
ISO
GO_REF:0000107
PMID:21873635
(PMID:14580349), (PMID:27007846), (PMID:29111974), (PMID:8262073)
Ensembl
RGD
PMID:8262073, PMID:14580349, PMID:27007846, PMID:29111974, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr12:19,320,269...19,328,706
Ensembl chr12:19,320,271...19,328,637
JBrowse link
G Taf6l TATA-box binding protein associated factor 6 like IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:224,974,238...224,986,819
Ensembl chr 1:224,974,208...224,986,291
JBrowse link
G Taf7 TATA-box binding protein associated factor 7 ISO
IBA
(MGI:MGI:1342782|PMID:10438527)
(PMID:14580349), (PMID:24927529), (PMID:25412659), (PMID:27007846), (PMID:29111974), (PMID:7824954)
PMID:21873635
RGD PMID:7824954, PMID:10438527, PMID:14580349, PMID:24927529, PMID:25412659, PMID:27007846, PMID:29111974, PMID:21873635 MGI:MGI:1342782, RGD:13792537 NCBI chr18:30,779,149...30,781,297
Ensembl chr18:30,779,150...30,781,292
JBrowse link
G Taf7l TATA-box binding protein associated factor 7-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:105,292,338...105,308,554
Ensembl chr  X:105,292,338...105,308,554
JBrowse link
G Taf7l-ps1 TAF7-like RNA polymerase II, TATA box binding protein (TBP)-associated factor, pseudogene 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:59,138,768...59,139,910 JBrowse link
G Taf7l2 Taf7l2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 7:59,138,768...59,139,910 JBrowse link
G Taf8 TATA-box binding protein associated factor 8 ISO
IBA
(PMID:14580349), (PMID:27007846), (PMID:29111974)
PMID:21873635
RGD PMID:14580349, PMID:27007846, PMID:29111974, PMID:21873635 RGD:13792537 NCBI chr 9:15,513,048...15,532,992
Ensembl chr 9:15,513,063...15,529,800
JBrowse link
G Taf9 TATA-box binding protein associated factor 9 IBA
ISO
PMID:21873635
(PMID:14580349), (PMID:15899866), (PMID:29111974)
RGD PMID:14580349, PMID:15899866, PMID:29111974, PMID:21873635 RGD:13792537 NCBI chr 2:30,664,407...30,668,414
Ensembl chr 2:30,664,639...30,668,414
JBrowse link
G Taf9b TATA-box binding protein associated factor 9b IBA
ISO
PMID:21873635
(PMID:15899866), (PMID:29111974)
RGD PMID:15899866, PMID:29111974, PMID:21873635 RGD:13792537 NCBI chr  X:77,281,234...77,295,238
Ensembl chr  X:77,281,210...77,295,426
JBrowse link
G Tbp TATA box binding protein IDA
ISO
(PMID:14580349), (PMID:27007846), (PMID:27193682), (PMID:29111974), (PMID:7729427) RGD PMID:7729427, PMID:14580349, PMID:27007846, PMID:27193682, PMID:29111974, PMID:7980586 RGD:2306552 NCBI chr 1:57,491,381...57,509,335
Ensembl chr 1:57,491,643...57,508,449
JBrowse link
G Tcea1 transcription elongation factor A1 ISO (PMID:27193682) RGD PMID:27193682 NCBI chr 5:14,511,183...14,548,494
Ensembl chr 5:14,511,183...14,548,429
JBrowse link
G Tp53 tumor protein p53 colocalizes_with ISO (PMID:15053879) RGD PMID:15053879 NCBI chr10:56,186,299...56,198,449
Ensembl chr10:56,187,020...56,198,449
JBrowse link
transcription factor TFIIE complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2e1 general transcription factor IIE subunit 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:66,078,786...66,111,394
Ensembl chr11:66,078,820...66,110,848
JBrowse link
G Gtf2e2 general transcription factor IIE subunit 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:62,113,846...62,164,339
Ensembl chr16:62,113,854...62,164,135
JBrowse link
transcription factor TFIIF complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gtf2f1 general transcription factor IIF subunit 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:10,032,806...10,042,392
Ensembl chr 9:10,033,011...10,042,418
JBrowse link
G Gtf2f2 general transcription factor IIF subunit 2 IEA
IBA
GO_REF:0000002
PMID:21873635
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr15:57,942,057...58,068,892
Ensembl chr15:57,942,059...58,068,892
JBrowse link
transcription factor TFIIH core complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063323.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:28,557,633...28,557,848 JBrowse link
G Ccnh cyclin H ISO
IEA
(PMID:8692841), (PMID:8692842)
GO_REF:0000107
RGD
Ensembl
PMID:8692841, PMID:8692842 GO_REF:0000107 NCBI chr 2:13,593,100...13,613,910
Ensembl chr 2:13,593,100...13,613,910
JBrowse link
G Cdk7 cyclin-dependent kinase 7 ISO
IEA
(PMID:8692841)
GO_REF:0000107
RGD
Ensembl
PMID:8692841 GO_REF:0000107 NCBI chr 2:30,710,642...30,735,522
Ensembl chr 2:30,710,643...30,735,514
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit IDA
ISO
(PMID:8692841), (PMID:8692842) RGD PMID:8692841, PMID:8692842, PMID:8855220 RGD:1642642 NCBI chr 1:80,293,574...80,307,334
Ensembl chr 1:80,293,566...80,307,344
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit IDA
ISO
(PMID:8692841), (PMID:8692842) RGD PMID:8692841, PMID:8692842, PMID:8855220 RGD:1642642 NCBI chr18:25,037,668...25,068,380
Ensembl chr18:25,037,625...25,068,389
JBrowse link
G Gtf2h1 general transcription factor IIH subunit 1 ISO
IBA
(PMID:8692841)
PMID:21873635
RGD PMID:8692841, PMID:21873635 RGD:13792537 NCBI chr 1:102,849,618...102,877,939
Ensembl chr 1:102,849,889...102,877,944
JBrowse link
G Gtf2h3 general transcription factor IIH subunit 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:37,427,556...37,444,027
Ensembl chr12:37,427,546...37,444,282
JBrowse link
G Gtf2h4 general transcription factor 2H subunit 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:3,582,688...3,588,373
Ensembl chr20:3,582,742...3,588,375
JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:46,978,345...46,985,032
Ensembl chr 1:46,978,458...46,985,032
JBrowse link
G Mnat1 MNAT1 component of CDK activating kinase ISO
IEA
(PMID:8692841)
GO_REF:0000107
RGD
Ensembl
PMID:8692841 GO_REF:0000107 NCBI chr 6:95,995,341...96,153,331
Ensembl chr 6:96,007,805...96,153,330
JBrowse link
transcription factor TFIIH holo complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063323.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 6:28,557,633...28,557,848 JBrowse link
G Ccnh cyclin H ISO
IBA
ISS
(PMID:9852112)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:9852112, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 2:13,593,100...13,613,910
Ensembl chr 2:13,593,100...13,613,910
JBrowse link
G Cdk7 cyclin-dependent kinase 7 IDA
ISS
ISO
GO_REF:0000024
(PMID:9852112)
UniProt
RGD
PMID:9852112, PMID:7553866 GO_REF:0000024, RGD:9590319 NCBI chr 2:30,710,642...30,735,522
Ensembl chr 2:30,710,643...30,735,514
JBrowse link
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit ISO (PMID:9852112) RGD PMID:9852112 NCBI chr 1:80,293,574...80,307,334
Ensembl chr 1:80,293,566...80,307,344
JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit ISS
ISO
IBA
GO_REF:0000024
(PMID:9852112)
PMID:21873635
UniProt
RGD
PMID:9852112, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr18:25,037,668...25,068,380
Ensembl chr18:25,037,625...25,068,389
JBrowse link
G Gtf2f2 general transcription factor IIF subunit 2 IDA RGD PMID:7553866 RGD:9590319 NCBI chr15:57,942,057...58,068,892
Ensembl chr15:57,942,059...58,068,892
JBrowse link
G Gtf2h1 general transcription factor IIH subunit 1 IDA
IBA
ISO
PMID:21873635
(PMID:9852112)
RGD PMID:9852112, PMID:7553866, PMID:21873635 RGD:9590319, RGD:13792537 NCBI chr 1:102,849,618...102,877,939
Ensembl chr 1:102,849,889...102,877,944
JBrowse link
G Gtf2h2 general transcription factor IIH subunit 2 ISS
IBA
GO_REF:0000024
PMID:21873635
UniProt PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 2:30,494,718...30,522,716
Ensembl chr 2:30,494,825...30,522,727
JBrowse link
G Gtf2h3 general transcription factor IIH subunit 3 ISO
IBA
ISS
(PMID:9852112)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:9852112, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr12:37,427,556...37,444,027
Ensembl chr12:37,427,546...37,444,282
JBrowse link
G Gtf2h4 general transcription factor 2H subunit 4 ISO
IBA
(PMID:9852112)
PMID:21873635
RGD PMID:9852112, PMID:21873635 RGD:13792537 NCBI chr20:3,582,688...3,588,373
Ensembl chr20:3,582,742...3,588,375
JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:46,978,345...46,985,032
Ensembl chr 1:46,978,458...46,985,032
JBrowse link
G Mnat1 MNAT1 component of CDK activating kinase ISO
IBA
(PMID:9852112)
PMID:21873635
RGD PMID:9852112, PMID:21873635 RGD:13792537 NCBI chr 6:95,995,341...96,153,331
Ensembl chr 6:96,007,805...96,153,330
JBrowse link
transcription factor TFIIK complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnh cyclin H IBA
ISO
PMID:21873635
(PMID:8692841)
RGD PMID:8692841, PMID:21873635 RGD:13792537 NCBI chr 2:13,593,100...13,613,910
Ensembl chr 2:13,593,100...13,613,910
JBrowse link
G Cdk7 cyclin-dependent kinase 7 IBA
IEA
ISO
PMID:21873635
GO_REF:0000107
(PMID:8692841)
Ensembl
RGD
PMID:8692841, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr 2:30,710,642...30,735,522
Ensembl chr 2:30,710,643...30,735,514
JBrowse link
G Mnat1 MNAT1 component of CDK activating kinase ISO
IEA
(PMID:8692841)
GO_REF:0000107
RGD
Ensembl
PMID:8692841 GO_REF:0000107 NCBI chr 6:95,995,341...96,153,331
Ensembl chr 6:96,007,805...96,153,330
JBrowse link
transcription factor TFTC complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kat2a lysine acetyltransferase 2A ISO (PMID:10373431) RGD PMID:10373431 NCBI chr10:88,611,586...88,619,558
Ensembl chr10:88,611,586...88,619,537
JBrowse link
G LOC690283 similar to TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:60,105,788...60,108,103
Ensembl chr 1:60,106,034...60,107,039
JBrowse link
G Supt3h SPT3 homolog, SAGA and STAGA complex component ISO
IEA
(PMID:10373431)
GO_REF:0000107
RGD
Ensembl
PMID:10373431 GO_REF:0000107 NCBI chr 9:18,249,565...18,604,814
Ensembl chr 9:18,319,246...18,371,856
JBrowse link
G Tada3 transcriptional adaptor 3 ISO (PMID:10373431) RGD PMID:10373431 NCBI chr 4:145,318,417...145,330,291
Ensembl chr 4:145,318,435...145,329,878
JBrowse link
G Taf10 TATA-box binding protein associated factor 10 ISO (PMID:10373431), (PMID:9603525) RGD PMID:9603525, PMID:10373431 NCBI chr 1:170,585,160...170,586,428
Ensembl chr 1:170,585,167...170,586,603
JBrowse link
G Taf12 TATA-box binding protein associated factor 12 ISO (PMID:9603525) RGD PMID:9603525 NCBI chr 5:150,459,701...150,476,521
Ensembl chr 5:150,459,713...150,475,186
JBrowse link
G Taf2 TATA-box binding protein associated factor 2 ISO (PMID:10373431) RGD PMID:10373431 NCBI chr 7:94,698,987...94,755,924
Ensembl chr 7:94,698,987...94,755,924
JBrowse link
G Taf4 TATA-box binding protein associated factor 4 ISO (PMID:10373431), (PMID:9603525) RGD PMID:9603525, PMID:10373431 NCBI chr 3:175,300,842...175,364,655
Ensembl chr 3:175,301,879...175,327,689
JBrowse link
G Taf5 TATA-box binding protein associated factor 5 ISO (PMID:10373431), (PMID:9603525) RGD PMID:9603525, PMID:10373431 NCBI chr 1:266,844,480...266,859,965
Ensembl chr 1:266,844,480...266,859,965
JBrowse link
G Taf5l TATA-box binding protein associated factor 5 like ISO (PMID:10373431) RGD PMID:10373431 NCBI chr19:56,781,854...56,801,005
Ensembl chr19:56,781,859...56,799,445
JBrowse link
G Taf6 TATA-box binding protein associated factor 6 IEA
ISO
GO_REF:0000107
(PMID:9603525)
Ensembl
RGD
PMID:9603525 GO_REF:0000107 NCBI chr12:19,320,269...19,328,706
Ensembl chr12:19,320,271...19,328,637
JBrowse link
G Taf7 TATA-box binding protein associated factor 7 ISO (PMID:9603525) RGD PMID:9603525 NCBI chr18:30,779,149...30,781,297
Ensembl chr18:30,779,150...30,781,292
JBrowse link
G Taf9 TATA-box binding protein associated factor 9 ISO
IBA
(PMID:15899866)
PMID:21873635
RGD PMID:15899866, PMID:21873635 RGD:13792537 NCBI chr 2:30,664,407...30,668,414
Ensembl chr 2:30,664,639...30,668,414
JBrowse link
G Taf9b TATA-box binding protein associated factor 9b ISO (PMID:15899866) RGD PMID:15899866 NCBI chr  X:77,281,234...77,295,238
Ensembl chr  X:77,281,210...77,295,426
JBrowse link
G Trrap transformation/transcription domain-associated protein ISO (PMID:10373431) RGD PMID:10373431 NCBI chr12:11,537,950...11,627,563
Ensembl chr12:11,537,950...11,627,563
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20609
    protein-containing complex 6093
      transcription regulator complex 434
        RNA polymerase II transcription regulator complex 162
          ATF1-ATF4 transcription factor complex 2
          ATF4-CREB1 transcription factor complex 2
          C/EBP complex 0
          CCAAT-binding factor complex 4
          CHOP-ATF4 complex 2
          CHOP-C/EBP complex 3
          CLOCK-BMAL transcription complex 2
          CSL-Notch-Mastermind transcription factor complex 0
          ISGF3 complex 0
          M/G1 phase-specific MADS box-forkhead transcription factor complex 0
          MBF transcription complex 0
          Myc-Max complex 0
          Nkx-2.5 complex 0
          Pi Mi complex 0
          Pip2-Oaf1 complex 0
          Rb-E2F complex 3
          SBF transcription complex 0
          SMN-Gemin2 complex 1
          SRF-myogenin-E12 complex 0
          TEAD-1-YAP complex 2
          TEAD-2-YAP complex 2
          TEAD-3-YAP complex 0
          TEAD-4-YAP complex 0
          activating signal cointegrator 1 complex 3
          activin responsive factor complex 3
          beta-catenin-ICAT complex 0
          beta-catenin-TCF complex + 11
          core mediator complex 7
          core-binding factor complex 2
          ecdysone receptor holocomplex + 0
          heteromeric SMAD protein complex 8
          insulin control element activator complex 0
          transcription factor AP-1 complex + 4
          transcription factor TFIIA complex 6
          transcription factor TFIID complex + 34
          transcription factor TFIIE complex 2
          transcription factor TFIIF complex 2
          transcription factor TFIIH core complex + 11
          transcription factor TFIIH holo complex + 12
          transcription factor TFIIK complex 3
          transcription factor TFTC complex 15
          upstream stimulatory factor complex 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.