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ONTOLOGY REPORT - ANNOTATIONS


Term:RNA phosphodiester bond hydrolysis
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Accession:GO:0090501 term browser browse the term
Definition:The RNA metabolic process in which the phosphodiester bonds between ribonucleotides are cleaved by hydrolysis.


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RNA phosphodiester bond hydrolysis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ang2 angiogenin, ribonuclease A family, member 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:28,103,688...28,121,494
Ensembl chr15:28,103,703...28,104,206
JBrowse link
G Dicer1 dicer 1 ribonuclease III IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Ear1 eosinophil-associated, ribonuclease A family, member 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:28,260,133...28,261,049
Ensembl chr15:28,260,411...28,260,866
JBrowse link
G Helz2 helicase with zinc finger 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:176,730,024...176,744,382
Ensembl chr 3:176,731,769...176,744,377
JBrowse link
G LOC100361866 eosinophil cationic protein-like IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:28,240,548...28,241,466
Ensembl chr15:28,240,731...28,241,198
JBrowse link
G LOC103690354 ribonuclease pancreatic beta-type IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:28,073,963...28,075,677
Ensembl chr15:28,074,953...28,075,411
JBrowse link
G LOC103694853 ribonuclease pancreatic gamma-type IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr15:28,128,078...28,128,536 JBrowse link
G Rnase1 ribonuclease A family member 1, pancreatic ISO
IBA
(PMID:9826755)
PMID:21873635
RGD PMID:9826755, PMID:21873635 RGD:13792537
G Rnase10 ribonuclease A family member 10 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:27,930,581...27,933,873
Ensembl chr15:27,933,211...27,933,849
JBrowse link
G Rnase11 ribonuclease A family member 11 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:27,972,201...27,977,885
Ensembl chr15:27,973,491...27,975,471
JBrowse link
G Rnase12 ribonuclease A family member 12 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:27,981,044...27,993,044
Ensembl chr15:27,981,226...27,981,663
JBrowse link
G Rnase13 ribonuclease A family member 13 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:28,322,851...28,325,875
Ensembl chr15:28,323,046...28,323,507
JBrowse link
G Rnase17 ribonuclease 17 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:28,204,043...28,204,929
Ensembl chr15:28,204,224...28,204,691
JBrowse link
G Rnase1l1 ribonuclease, RNase A family, 1-like 1 (pancreatic) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:28,043,491...28,045,098
Ensembl chr15:28,043,758...28,044,210
JBrowse link
G Rnase1l2 ribonuclease, RNase A family, 1-like 2 (pancreatic) IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:28,127,147...28,128,797
Ensembl chr15:28,128,078...28,128,536
JBrowse link
G Rnase2 ribonuclease A family member 2 ISO (PMID:9826755) RGD PMID:9826755 NCBI chr15:28,154,482...28,155,291
Ensembl chr15:28,154,482...28,155,291
JBrowse link
G Rnase3 ribonuclease A family member 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:28,216,744...28,217,614
Ensembl chr15:28,216,744...28,217,614
JBrowse link
G Rnase4 ribonuclease A family member 4 ISO (PMID:3467790) RGD PMID:3467790 NCBI chr15:28,018,040...28,035,395
Ensembl chr15:28,018,040...28,035,389
Ensembl chr15:28,018,040...28,035,389
JBrowse link
G Rnase6 ribonuclease A family member k6 ISO (PMID:9826755) RGD PMID:9826755 NCBI chr15:28,080,307...28,084,269
Ensembl chr15:28,081,004...28,081,465
JBrowse link
G Rnase9 ribonuclease A family member 9 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:27,964,000...27,968,492
Ensembl chr15:27,964,804...27,968,358
JBrowse link
G Rnasel ribonuclease L IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr13:71,188,712...71,202,636
Ensembl chr13:71,192,142...71,202,625
JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:153,210,829...153,250,705
Ensembl chr 3:153,210,829...153,250,641
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A ISO
ISS
(MGI:MGI:3842851|PMID:19322177)
GO_REF:0000024
RGD
UniProt
PMID:19322177 GO_REF:0000024, MGI:MGI:3842851 NCBI chr 5:143,111,342...143,120,131
Ensembl chr 5:143,111,074...143,120,165
JBrowse link
cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bop1 BOP1 ribosomal biogenesis factor ISO (MGI:MGI:3843427|PMID:17353269) RGD PMID:17353269 MGI:MGI:3843427 NCBI chr 7:117,514,529...117,538,342
Ensembl chr 7:117,514,533...117,538,342
JBrowse link
G Nol9 nucleolar protein 9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:169,213,076...169,233,173
Ensembl chr 5:169,213,115...169,230,141
JBrowse link
G Npm1 nucleophosmin 1 IDA RGD PMID:9742256 RGD:11535027 NCBI chr10:18,080,949...18,091,062
Ensembl chr10:18,080,950...18,090,950
JBrowse link
cleavage involved in rRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC103690013 H/ACA ribonucleoprotein complex subunit 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:37,069,387...37,072,758
Ensembl chr10:37,069,344...37,072,733
JBrowse link
G Nhp2 NHP2 ribonucleoprotein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:34,975,701...34,979,082
Ensembl chr10:34,975,708...34,979,082
JBrowse link
G Nob1 NIN1 (RPN12) binding protein 1 homolog IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:38,397,466...38,409,924
Ensembl chr19:38,397,466...38,409,924
JBrowse link
G Rrp36 ribosomal RNA processing 36 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:16,618,853...16,627,128
Ensembl chr 9:16,619,040...16,625,609
JBrowse link
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,946,118...43,948,224
Ensembl chr17:43,946,130...43,948,223
JBrowse link
G Fcf1 FCF1 rRNA-processing protein ISO (MGI:MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:MGI:5617283 NCBI chr 6:108,796,182...108,808,051
Ensembl chr 6:108,796,182...108,808,048
JBrowse link
G Nop9 NOP9 nucleolar protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:34,431,357...34,439,861
Ensembl chr15:34,431,357...34,439,861
JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 ISO (MGI:MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:MGI:5617283 NCBI chr 1:247,228,012...247,272,369
Ensembl chr 1:247,228,061...247,305,693
JBrowse link
G Tbl3 transducin (beta)-like 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:14,066,984...14,072,197
Ensembl chr10:14,066,948...14,072,230
JBrowse link
G Utp23 UTP23, small subunit processome component ISO (MGI:MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:MGI:5617283 NCBI chr 7:91,384,329...91,389,605
Ensembl chr 7:91,384,187...91,389,598
JBrowse link
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,946,118...43,948,224
Ensembl chr17:43,946,130...43,948,223
JBrowse link
G AC135409.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:50,604,768...50,605,053 JBrowse link
G AC141489.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:159,606,647...159,606,989 JBrowse link
G Fcf1 FCF1 rRNA-processing protein ISO (MGI:MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:MGI:5617283 NCBI chr 6:108,796,182...108,808,051
Ensembl chr 6:108,796,182...108,808,048
JBrowse link
G Kri1 KRI1 homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:22,301,025...22,317,049
Ensembl chr 8:22,301,498...22,315,339
JBrowse link
G Nop9 NOP9 nucleolar protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:34,431,357...34,439,861
Ensembl chr15:34,431,357...34,439,861
JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 ISO (MGI:MGI:5617283|PMID:25190460) RGD PMID:25190460 MGI:MGI:5617283 NCBI chr 1:247,228,012...247,272,369
Ensembl chr 1:247,228,061...247,305,693
JBrowse link
G Rpp40 ribonuclease P/MRP subunit p40 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:29,638,647...29,647,709
Ensembl chr17:29,638,677...29,647,763
JBrowse link
G Rps21 ribosomal protein S21 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:175,629,176...175,630,198
Ensembl chr 3:175,629,374...175,630,048
JBrowse link
G Rps21-ps1 ribosomal protein S21, pseudogene 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:159,606,647...159,606,990 JBrowse link
G Rrs1 ribosome biogenesis regulator 1 homolog IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:9,430,710...9,432,343
Ensembl chr 5:9,430,728...9,432,343
JBrowse link
endonucleolytic cleavage involved in tRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rpp40 ribonuclease P/MRP subunit p40 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:29,638,647...29,647,709
Ensembl chr17:29,638,677...29,647,763
JBrowse link
endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bms1 BMS1 ribosome biogenesis factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:150,433,567...150,471,783
Ensembl chr 4:150,433,570...150,471,834
JBrowse link
G Rcl1 RNA terminal phosphate cyclase-like 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:247,228,012...247,272,369
Ensembl chr 1:247,228,061...247,305,693
JBrowse link
G Tsr1 TSR1, ribosome maturation factor IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:61,746,070...61,757,518
Ensembl chr10:61,746,059...61,757,518
JBrowse link
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC135409.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 8:50,604,768...50,605,053 JBrowse link
G AC141489.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 5:159,606,647...159,606,989 JBrowse link
G Rps21 ribosomal protein S21 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:175,629,176...175,630,198
Ensembl chr 3:175,629,374...175,630,048
JBrowse link
G Rps21-ps1 ribosomal protein S21, pseudogene 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:159,606,647...159,606,990 JBrowse link
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abt1 activator of basal transcription 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:43,946,118...43,948,224
Ensembl chr17:43,946,130...43,948,223
JBrowse link
G Nop9 NOP9 nucleolar protein IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:34,431,357...34,439,861
Ensembl chr15:34,431,357...34,439,861
JBrowse link
G Tbl3 transducin (beta)-like 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:14,066,984...14,072,197
Ensembl chr10:14,066,948...14,072,230
JBrowse link
exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eri1 exoribonuclease 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:60,307,148...60,327,237
Ensembl chr16:60,307,148...60,327,236
JBrowse link
G Eri2 ERI1 exoribonuclease family member 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:189,540,145...189,549,891
Ensembl chr 1:189,540,145...189,549,891
JBrowse link
G Eri3 ERI1 exoribonuclease family member 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:136,406,009...136,533,408
Ensembl chr 5:136,406,130...136,533,389
JBrowse link
G Exosc10 exosome component 10 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:165,374,964...165,398,195
Ensembl chr 5:165,374,951...165,398,217
JBrowse link
G Exosc2 exosome component 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:10,151,734...10,161,997
Ensembl chr 3:10,151,284...10,161,989
JBrowse link
G Exosc3 exosome component 3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 5:60,866,498...60,871,734
Ensembl chr 5:60,868,502...60,871,705
JBrowse link
G Exosc7 exosome component 7 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:132,204,628...132,229,968
Ensembl chr 8:132,204,604...132,229,969
JBrowse link
G Exosc8 exosome component 8 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:143,925,643...143,932,240
Ensembl chr 2:143,925,546...143,931,940
JBrowse link
G Exosc9 exosome component 9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 2:123,264,679...123,275,623
Ensembl chr 2:123,264,694...123,294,880
JBrowse link
mitochondrial tRNA 3'-trailer cleavage, endonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elac2 elaC ribonuclease Z 2 IEA
IBA
ISS
ISO
GO_REF:0000107
PMID:21873635
GO_REF:0000024
(PMID:21593607)
Ensembl
UniProt
RGD
PMID:21593607, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr10:51,478,378...51,501,167
Ensembl chr10:51,478,378...51,501,165
JBrowse link
mRNA cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ern1 endoplasmic reticulum to nucleus signaling 1 ISO (MGI:MGI:6114871|PMID:25164867) RGD PMID:25164867 MGI:MGI:6114871 NCBI chr10:94,588,555...94,682,072
Ensembl chr10:94,588,555...94,681,914
JBrowse link
G LOC103690054 DNA-directed RNA polymerase II subunit RPB9 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:91,041,173...91,042,258
Ensembl chr 1:91,041,214...91,042,230
Ensembl chr 1:91,041,214...91,042,230
JBrowse link
G Polr1h RNA polymerase I subunit H IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:2,088,518...2,092,436
Ensembl chr20:2,088,533...2,092,436
JBrowse link
G Polr2i RNA polymerase II subunit I IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:88,686,812...88,688,249
Ensembl chr 1:88,686,731...88,688,258
JBrowse link
mRNA cleavage involved in gene silencing by miRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 NOT ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,444,390...144,479,430
Ensembl chr 5:144,448,792...144,479,306
JBrowse link
G Ago2 argonaute RISC catalytic component 2 ISO
IEA
ISS
(MGI:MGI:5616320|PMID:16357216)
(PMID:15260970), (PMID:17524464), (PMID:18771919)
GO_REF:0000104
GO_REF:0000024
RGD
UniProt
PMID:15260970, PMID:16357216, PMID:17524464, PMID:18771919 GO_REF:0000024, GO_REF:0000104, MGI:MGI:5616320 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ago3 argonaute RISC catalytic component 3 NOT ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,355,792...144,436,509
Ensembl chr 5:144,364,269...144,436,509
JBrowse link
G Ago4 argonaute RISC component 4 NOT ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,501,875...144,557,165
Ensembl chr 5:144,504,938...144,556,889
JBrowse link
G Mir196a microRNA 196a ISO (MGI:MGI:3042528|PMID:15105502), (MGI:MGI:3510301|PMID:15361871) RGD PMID:15105502, PMID:15361871 MGI:MGI:3042528, MGI:MGI:3510301 NCBI chr 7:144,584,235...144,584,344
Ensembl chr 7:144,584,235...144,584,344
JBrowse link
G Mir196b microRNA 196b ISO (MGI:MGI:3042528|PMID:15105502) RGD PMID:15105502 MGI:MGI:3042528 NCBI chr 4:82,199,056...82,199,140
Ensembl chr 4:82,199,056...82,199,140
JBrowse link
G Mir196c microRNA 196c ISO (MGI:MGI:3042528|PMID:15105502), (MGI:MGI:3510301|PMID:15361871) RGD PMID:15105502, PMID:15361871 MGI:MGI:3042528, MGI:MGI:3510301 NCBI chr10:84,113,578...84,113,657
Ensembl chr10:84,113,578...84,113,657
JBrowse link
G Mov10 Mov10 RISC complex RNA helicase ISO (PMID:16289642) RGD PMID:16289642 NCBI chr 2:207,277,088...207,301,245
Ensembl chr 2:207,278,161...207,300,854
JBrowse link
mRNA cleavage involved in gene silencing by siRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 NOT ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,444,390...144,479,430
Ensembl chr 5:144,448,792...144,479,306
JBrowse link
G Ago2 argonaute RISC catalytic component 2 IEA
ISO
GO_REF:0000107
(PMID:15260970), (PMID:22795694)
Ensembl
RGD
PMID:15260970, PMID:22795694 GO_REF:0000107 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ago3 argonaute RISC catalytic component 3 NOT ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,355,792...144,436,509
Ensembl chr 5:144,364,269...144,436,509
JBrowse link
G Ago4 argonaute RISC component 4 NOT ISO (PMID:15260970) RGD PMID:15260970 NCBI chr 5:144,501,875...144,557,165
Ensembl chr 5:144,504,938...144,556,889
JBrowse link
mRNA cleavage involved in mRNA processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ern1 endoplasmic reticulum to nucleus signaling 1 ISO (PMID:21317875) RGD PMID:21317875 NCBI chr10:94,588,555...94,682,072
Ensembl chr10:94,588,555...94,681,914
JBrowse link
positive regulation of mRNA cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt21 nudix hydrolase 21 ISS
ISO
GO_REF:0000024
(PMID:15937220)
UniProt
RGD
PMID:15937220 GO_REF:0000024 NCBI chr19:11,451,366...11,470,637
Ensembl chr19:11,450,760...11,467,644
JBrowse link
pre-mRNA cleavage required for polyadenylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC096468.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:102,215,722...102,227,554 JBrowse link
G Cpsf2 cleavage and polyadenylation specific factor 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:125,870,372...125,898,039
Ensembl chr 6:125,870,372...125,898,874
JBrowse link
G Cpsf4 cleavage and polyadenylation specific factor 4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:11,199,893...11,215,690
Ensembl chr12:11,199,898...11,215,708
JBrowse link
G Cpsf6 cleavage and polyadenylation specific factor 6 ISO (PMID:20695905) RGD PMID:20695905 NCBI chr 7:60,385,688...60,417,661
Ensembl chr 7:60,385,688...60,416,925
JBrowse link
G Cpsf7 cleavage and polyadenylation specific factor 7 ISS
ISO
GO_REF:0000024
(PMID:20695905), (PMID:23187700)
UniProt
RGD
PMID:20695905, PMID:23187700 GO_REF:0000024 NCBI chr 1:226,572,399...226,596,185
Ensembl chr 1:226,573,105...226,596,131
JBrowse link
G Cstf2 cleavage stimulation factor subunit 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:104,882,726...104,909,746
Ensembl chr  X:104,882,704...104,909,739
JBrowse link
G Cstf2t cleavage stimulation factor subunit 2, tau variant IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:249,574,954...249,578,520
Ensembl chr 1:249,574,954...249,578,520
JBrowse link
G Fip1l1 factor interacting with PAPOLA and CPSF1 IBA
IEA
PMID:21873635
GO_REF:0000002
InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr14:36,150,381...36,208,395
Ensembl chr14:36,150,399...36,208,373
JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 ISO
ISS
(PMID:9342333)
GO_REF:0000024
RGD
UniProt
PMID:9342333 GO_REF:0000024 NCBI chr 5:61,734,118...61,767,098
Ensembl chr 5:61,734,118...61,766,481
JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 ISO (PMID:9342333) RGD PMID:9342333 NCBI chr11:72,071,838...72,103,087
Ensembl chr11:72,921,282...72,929,003
JBrowse link
G Nudt21 nudix hydrolase 21 ISO (PMID:20695905) RGD PMID:20695905 NCBI chr19:11,451,366...11,470,637
Ensembl chr19:11,450,760...11,467,644
JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific ISO
ISS
(PMID:21102410)
GO_REF:0000024
RGD
UniProt
PMID:21102410 GO_REF:0000024 NCBI chr 1:225,151,462...225,162,445
Ensembl chr 1:225,151,404...225,162,595
JBrowse link
RNA phosphodiester bond hydrolysis, endonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC118772.1 IEA GO_REF:0000108 GOC GO_REF:0000108 Ensembl chr10:70,484,134...70,506,963 JBrowse link
G Ago1 argonaute RISC component 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:144,444,390...144,479,430
Ensembl chr 5:144,448,792...144,479,306
JBrowse link
G Ago2 argonaute RISC catalytic component 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:114,339,607...114,377,277
Ensembl chr 7:114,339,434...114,380,613
JBrowse link
G Ago3 argonaute RISC catalytic component 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:144,355,792...144,436,509
Ensembl chr 5:144,364,269...144,436,509
JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:27,849,943...27,852,083
Ensembl chr15:27,849,979...27,852,082
JBrowse link
G Cpsf3 cleavage and polyadenylation specific factor 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:43,363,792...43,391,712
Ensembl chr 6:43,363,792...43,391,712
JBrowse link
G Dbr1 debranching RNA lariats 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:107,826,690...107,838,186
Ensembl chr 8:107,826,424...107,838,339
JBrowse link
G Dgcr8 DGCR8 microprocessor complex subunit IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr11:86,852,682...86,885,233
Ensembl chr11:86,852,711...86,885,224
JBrowse link
G Dicer1 dicer 1 ribonuclease III ISO (PMID:21753850), (PMID:25549615) RGD PMID:21753850, PMID:25549615 NCBI chr 6:128,388,084...128,453,234
Ensembl chr 6:128,388,053...128,434,183
JBrowse link
G Drosha drosha ribonuclease III IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:62,887,267...63,000,307
Ensembl chr 2:62,887,267...62,999,572
JBrowse link
G Edc3 enhancer of mRNA decapping 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:62,482,126...62,527,665
Ensembl chr 8:62,482,140...62,526,202
JBrowse link
G Endog endonuclease G IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:8,741,833...8,744,414
Ensembl chr 3:8,741,766...8,744,592
JBrowse link
G Endou endonuclease, poly(U)-specific IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:139,202,342...139,223,022
Ensembl chr 7:139,201,054...139,223,116
JBrowse link
G Endov endonuclease V IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:108,630,723...108,646,679
Ensembl chr10:108,630,823...108,646,677
JBrowse link
G Ern1 endoplasmic reticulum to nucleus signaling 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:94,588,555...94,682,072
Ensembl chr10:94,588,555...94,681,914
JBrowse link
G Ern2 endoplasmic reticulum to nucleus signaling 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:192,126,023...192,142,865
Ensembl chr 1:192,126,023...192,142,854
JBrowse link
G Exog exo/endonuclease G IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:128,133,398...128,153,110
Ensembl chr 8:128,133,431...128,153,110
JBrowse link
G Fen1 flap structure-specific endonuclease 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:226,251,516...226,256,160
Ensembl chr 1:226,251,518...226,255,886
JBrowse link
G Khnyn KH and NYN domain containing IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:34,551,570...34,563,729
Ensembl chr15:34,552,410...34,561,727
JBrowse link
G Lactb2 lactamase, beta 2 ISO
ISS
(PMID:26826708)
GO_REF:0000024
RGD
UniProt
PMID:26826708 GO_REF:0000024 NCBI chr 5:4,982,348...5,005,111
Ensembl chr 5:4,982,348...5,005,109
JBrowse link
G LOC103690354 ribonuclease pancreatic beta-type IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:28,073,963...28,075,677
Ensembl chr15:28,074,953...28,075,411
JBrowse link
G LOC103694852 ribonuclease K6-like IEA GO_REF:0000108 GOC GO_REF:0000108 Ensembl chr15:28,081,004...28,081,465 JBrowse link
G LOC103694853 ribonuclease pancreatic gamma-type IEA GO_REF:0000108 GOC GO_REF:0000108 Ensembl chr15:28,128,078...28,128,536 JBrowse link
G LOC688828 similar to Nucleoside diphosphate-linked moiety X motif 16 (Nudix motif 16) IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:113,687,983...113,689,657
Ensembl chr 8:113,687,975...113,689,681
JBrowse link
G Mrpl44 mitochondrial ribosomal protein L44 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:85,542,763...85,547,814
Ensembl chr 9:85,542,702...85,548,144
JBrowse link
G Nob1 NIN1 (RPN12) binding protein 1 homolog IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:38,397,466...38,409,924
Ensembl chr19:38,397,466...38,409,924
JBrowse link
G Nudt16 nudix hydrolase 16 ISO (PMID:29483298) RGD PMID:29483298 NCBI chr 8:113,673,069...113,675,124
Ensembl chr 8:113,672,758...113,675,128
JBrowse link
G Nudt16l1 nudix hydrolase 16 like 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:10,829,866...10,831,782
Ensembl chr10:10,829,867...10,831,782
JBrowse link
G Nynrin NYN domain and retroviral integrase containing IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:34,520,040...34,541,671
Ensembl chr15:34,520,142...34,539,930
JBrowse link
G Piwil1 piwi-like RNA-mediated gene silencing 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:31,608,641...31,629,961
Ensembl chr12:31,609,053...31,629,881
JBrowse link
G Piwil2 piwi-like RNA-mediated gene silencing 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:52,037,693...52,116,277
Ensembl chr15:52,037,693...52,116,001
JBrowse link
G Piwil4 piwi-like RNA-mediated gene silencing 4 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:13,208,774...13,251,970
Ensembl chr 8:13,208,774...13,251,812
JBrowse link
G Pop1 POP1 homolog, ribonuclease P/MRP subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:73,270,403...73,298,209
Ensembl chr 7:73,270,455...73,298,239
JBrowse link
G Pop4 POP4 homolog, ribonuclease P/MRP subunit IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:94,661,127...94,669,461
Ensembl chr 1:94,661,128...94,669,461
JBrowse link
G Pop5 POP5 homolog, ribonuclease P/MRP subunit IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:47,138,346...47,143,152
Ensembl chr12:47,138,346...47,142,852
JBrowse link
G Pop7 POP7 homolog, ribonuclease P/MRP subunit IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:22,259,713...22,260,754
Ensembl chr12:22,259,713...22,260,754
JBrowse link
G Prorp protein only RNase P catalytic subunit IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:76,079,880...76,171,298
Ensembl chr 6:76,079,880...76,171,296
JBrowse link
G Rida reactive intermediate imine deaminase A homolog IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:73,256,506...73,270,308
Ensembl chr 7:73,256,508...73,270,308
JBrowse link
G Rnase1 ribonuclease A family member 1, pancreatic IEA GO_REF:0000108 GOC GO_REF:0000108
G Rnase1l1 ribonuclease, RNase A family, 1-like 1 (pancreatic) IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:28,043,491...28,045,098
Ensembl chr15:28,043,758...28,044,210
JBrowse link
G Rnase1l2 ribonuclease, RNase A family, 1-like 2 (pancreatic) IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:28,127,147...28,128,797
Ensembl chr15:28,128,078...28,128,536
JBrowse link
G Rnase6 ribonuclease A family member k6 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:28,080,307...28,084,269
Ensembl chr15:28,081,004...28,081,465
JBrowse link
G Rnaseh1 ribonuclease H1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:47,916,188...47,925,582
Ensembl chr 6:47,916,188...47,925,571
JBrowse link
G Rnaseh2a ribonuclease H2, subunit A IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:26,074,980...26,084,780
Ensembl chr19:26,074,987...26,084,679
JBrowse link
G Rnaseh2b ribonuclease H2, subunit B IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:45,422,010...45,472,792
Ensembl chr15:45,422,010...45,464,892
JBrowse link
G Rnasek ribonuclease K IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:56,848,367...56,850,085
Ensembl chr10:56,848,369...56,850,085
JBrowse link
G Rnaset2 ribonuclease T2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:53,174,879...53,192,048
Ensembl chr 1:53,174,879...53,192,048
JBrowse link
G Rpp14 ribonuclease P/MRP subunit p14 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:18,625,963...18,636,157
Ensembl chr15:18,625,964...18,632,536
JBrowse link
G Rpp21 ribonuclease P/MRP subunit p21 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:2,515,541...2,517,471
Ensembl chr20:2,515,520...2,517,498
JBrowse link
G Rpp25 ribonuclease P and MRP subunit p25 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:62,283,336...62,284,716
Ensembl chr 8:62,283,336...62,284,716
JBrowse link
G Rpp30 ribonuclease P/MRP subunit p30 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:254,697,247...254,720,093
Ensembl chr 1:254,697,247...254,720,087
JBrowse link
G Rpp38 ribonuclease P/MRP subunit p38 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr17:78,915,450...78,919,144
Ensembl chr17:78,915,604...78,919,143
JBrowse link
G Slfn13 schlafen family member 13 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:70,326,157...70,343,024
Ensembl chr10:70,326,157...70,342,492
JBrowse link
G Slfn14 schlafen family member 14 ISO (MGI:MGI:5705207|PMID:25996083) RGD PMID:25996083 MGI:MGI:5705207 NCBI chr10:70,493,340...70,504,810 JBrowse link
G Smg6 SMG6 nonsense mediated mRNA decay factor IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:61,526,024...61,542,583
NCBI chr10:61,771,912...62,007,030
Ensembl chr10:61,772,449...62,007,030
Ensembl chr10:61,772,449...62,007,030
JBrowse link
G Snd1 staphylococcal nuclease and tudor domain containing 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:55,772,377...56,171,669
Ensembl chr 4:55,772,377...56,171,668
JBrowse link
G Tsen2 tRNA splicing endonuclease subunit 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:147,455,506...147,490,869
Ensembl chr 4:147,455,533...147,490,733
JBrowse link
G Tsen34 tRNA splicing endonuclease subunit 34 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:64,023,924...64,031,756
Ensembl chr 1:64,024,240...64,030,175
Ensembl chr 1:64,024,240...64,030,175
JBrowse link
G Tsen34l1 tRNA splicing endonuclease subunit 34-like 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:64,092,224...64,100,061
Ensembl chr 1:64,092,226...64,099,277
JBrowse link
G Tsn translin IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr13:34,240,809...34,251,671
Ensembl chr13:34,238,717...34,253,910
JBrowse link
G Tsnax translin-associated factor X IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:57,771,539...57,785,567
Ensembl chr19:57,771,398...57,785,543
JBrowse link
G Ybey ybeY metalloendoribonuclease IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:12,917,111...12,926,587
Ensembl chr20:12,917,111...12,926,587
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A ISO
IBA
ISS
(PMID:22055188)
PMID:21873635
(MGI:MGI:5706859|PMID:26000482), (MGI:MGI:5751631|PMID:26255671)
GO_REF:0000024
RGD
UniProt
PMID:22055188, PMID:26000482, PMID:26255671, PMID:21873635 GO_REF:0000024, MGI:MGI:5706859, MGI:MGI:5751631, RGD:13792537 NCBI chr 5:143,111,342...143,120,131
Ensembl chr 5:143,111,074...143,120,165
JBrowse link
G Zc3h12b zinc finger CCCH-type containing 12B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:65,040,032...65,074,857
Ensembl chr  X:65,040,104...65,074,712
JBrowse link
G Zc3h12c zinc finger CCCH type containing 12C IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:56,639,439...56,696,968
Ensembl chr 8:56,641,808...56,696,968
JBrowse link
G Zc3h12d zinc finger CCCH type containing 12D IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:1,937,620...1,972,919
Ensembl chr 1:1,938,419...1,972,918
JBrowse link
RNA phosphodiester bond hydrolysis, exonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angel1 angel homolog 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:110,644,327...110,681,397
Ensembl chr 6:110,644,267...110,681,408
JBrowse link
G Angel2 angel homolog 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr13:109,505,021...109,520,976
Ensembl chr13:109,505,697...109,520,419
JBrowse link
G Cnot1 CCR4-NOT transcription complex, subunit 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:9,668,186...9,761,605
Ensembl chr19:9,668,186...9,761,605
JBrowse link
G Cnot2 CCR4-NOT transcription complex, subunit 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:59,526,105...59,617,307
Ensembl chr 7:59,527,124...59,587,385
JBrowse link
G Cnot3 CCR4-NOT transcription complex, subunit 3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:64,130,823...64,147,066
Ensembl chr 1:64,130,908...64,147,251
JBrowse link
G Cnot6 CCR4-NOT transcription complex, subunit 6 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:35,144,291...35,195,126
Ensembl chr10:35,146,337...35,187,416
JBrowse link
G Cnot6l CCR4-NOT transcription complex, subunit 6-like IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:15,059,101...15,148,255
Ensembl chr14:15,059,387...15,146,586
JBrowse link
G Cnot7 CCR4-NOT transcription complex, subunit 7 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr16:54,899,452...54,918,616
Ensembl chr16:54,899,452...54,918,613
JBrowse link
G Cnot8 CCR4-NOT transcription complex, subunit 8 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:43,538,150...43,551,271
Ensembl chr10:43,538,160...43,551,271
JBrowse link
G Dcp2 decapping mRNA 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr18:35,489,274...35,671,676
Ensembl chr18:35,489,274...35,672,291
JBrowse link
G Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr15:83,466,330...83,494,107
Ensembl chr15:83,466,428...83,494,423
JBrowse link
G Dis3l DIS3-like exosome 3'-5' exoribonuclease IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:69,771,211...69,807,880
Ensembl chr 8:69,771,197...69,807,826
JBrowse link
G Dis3l2 DIS3-like 3'-5' exoribonuclease 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:93,767,837...94,161,106
Ensembl chr 9:93,660,680...94,160,760
JBrowse link
G Exd2 exonuclease 3'-5' domain containing 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 6:104,017,620...104,051,442
Ensembl chr 6:104,017,607...104,051,446
JBrowse link
G Exosc1 exosome component 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:261,169,798...261,179,865
Ensembl chr 1:261,170,229...261,179,790
JBrowse link
G Exosc4 exosome component 4 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:117,390,302...117,393,044
Ensembl chr 7:117,390,285...117,393,719
JBrowse link
G Exosc5 exosome component 5 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:82,452,104...82,461,607
Ensembl chr 1:82,452,469...82,461,606
JBrowse link
G Exosc6 exosome component 6 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:43,190,879...43,193,164
Ensembl chr19:43,191,390...43,192,208
JBrowse link
G Isg20 interferon stimulated exonuclease gene 20 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:140,602,553...140,608,892
Ensembl chr 1:140,601,791...140,608,946
JBrowse link
G Isg20l2 interferon stimulated exonuclease gene 20-like 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:187,302,192...187,311,677
Ensembl chr 2:187,302,192...187,311,676
JBrowse link
G LOC100912393 mRNA-decapping enzyme 2-like IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:3,940,948...3,965,964
Ensembl chr18:35,489,274...35,672,291
JBrowse link
G Noct nocturnin IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 2:140,286,661...140,306,869
Ensembl chr 2:140,286,661...140,306,869
JBrowse link
G Pan2 poly(A) specific ribonuclease subunit PAN2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:2,717,021...2,736,541
Ensembl chr 7:2,718,700...2,736,157
JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr12:9,214,116...9,331,901
Ensembl chr12:9,216,536...9,331,195
JBrowse link
G Parn poly(A)-specific ribonuclease ISO (PMID:26482878) RGD PMID:26482878 NCBI chr10:1,309,724...1,461,123
Ensembl chr10:1,308,414...1,461,269
JBrowse link
G Pde12 phosphodiesterase 12 IEA
ISO
GO_REF:0000107
(PMID:21245038), (PMID:21666256)
Ensembl
RGD
PMID:21245038, PMID:21666256 GO_REF:0000107 NCBI chr16:2,357,028...2,367,069
Ensembl chr16:2,357,028...2,367,253
JBrowse link
G Pnldc1 PARN like, ribonuclease domain containing 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:48,038,830...48,058,400
Ensembl chr 1:48,039,909...48,058,400
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:113,530,470...113,561,645
Ensembl chr14:113,530,470...113,561,645
JBrowse link
G Rexo2 RNA exonuclease 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:52,802,604...52,814,321
Ensembl chr 8:52,802,595...52,814,321
JBrowse link
G Toe1 target of EGR1, exonuclease ISO (PMID:17178830) RGD PMID:17178830 NCBI chr 5:135,659,733...135,663,299
Ensembl chr 5:135,659,734...135,663,299
JBrowse link
G Trir telomerase RNA component interacting RNase ISO
IBA
(PMID:28322335)
PMID:21873635
RGD PMID:28322335, PMID:21873635 RGD:13792537 NCBI chr19:26,142,720...26,146,136
Ensembl chr19:26,142,720...26,146,136
JBrowse link
G Usb1 U6 snRNA biogenesis phosphodiesterase 1 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:10,105,750...10,118,701
Ensembl chr19:10,105,701...10,119,128
JBrowse link
G Xrn1 5'-3' exoribonuclease 1 ISO (MGI:MGI:86601|PMID:9049243) RGD PMID:9049243 MGI:MGI:86601 NCBI chr 8:103,774,125...103,883,563
Ensembl chr 8:103,774,358...103,878,899
JBrowse link
G Xrn2 5'-3' exoribonuclease 2 IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 3:141,224,858...141,298,272
Ensembl chr 3:141,225,290...141,298,265
JBrowse link
G Zc3h12a zinc finger CCCH type containing 12A IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 5:143,111,342...143,120,131
Ensembl chr 5:143,111,074...143,120,165
JBrowse link
tRNA 3'-trailer cleavage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polr3k RNA polymerase III subunit K IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:177,374,812...177,379,009
Ensembl chr 3:177,374,812...177,379,008
JBrowse link
tRNA 3'-trailer cleavage, endonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elac1 elaC ribonuclease Z 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:69,706,522...69,723,869
Ensembl chr18:69,706,522...69,723,869
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20028
    metabolic process 12271
      organic substance metabolic process 11651
        macromolecule metabolic process 10086
          nucleic acid metabolic process 4985
            nucleic acid phosphodiester bond hydrolysis 276
              RNA phosphodiester bond hydrolysis 168
                RNA phosphodiester bond hydrolysis, endonucleolytic + 86
                RNA phosphodiester bond hydrolysis, exonucleolytic + 44
                cleavage involved in rRNA processing + 31
                mRNA cleavage + 24
                tRNA 3'-trailer cleavage + 3
Path 2
Term Annotations click to browse term
  biological_process 20028
    metabolic process 12271
      cellular metabolic process 11085
        cellular aromatic compound metabolic process 5715
          nucleobase-containing compound metabolic process 5489
            nucleic acid metabolic process 4985
              RNA metabolic process 4469
                RNA phosphodiester bond hydrolysis 168
                  RNA phosphodiester bond hydrolysis, endonucleolytic + 86
                  RNA phosphodiester bond hydrolysis, exonucleolytic + 44
                  cleavage involved in rRNA processing + 31
                  mRNA cleavage + 24
                  tRNA 3'-trailer cleavage + 3
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.