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ONTOLOGY REPORT - ANNOTATIONS


Term:phagosome acidification
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Accession:GO:0090383 term browser browse the term
Definition:Any process that reduces the pH of the phagosome, measured by the concentration of the hydrogen ion.
Synonyms:exact_synonym: phagosomal acidification



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phagosome acidification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab20 RAB20, member RAS oncogene family involved_in ISO (PMID:21255211) RGD PMID:21255211 NCBI chr16:78,019,337...78,043,529
Ensembl chr16:78,019,337...78,043,529
JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in ISO (PMID:21255211) RGD PMID:21255211 NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924
JBrowse link
G Rab39a RAB39A, member RAS oncogene family involved_in ISO (PMID:21255211) RGD PMID:21255211 NCBI chr 8:54,088,744...54,105,756
Ensembl chr 8:54,088,129...54,106,483
JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO
ISS
(PMID:21255211)
GO_REF:0000024
RGD
UniProt
PMID:21255211 GO_REF:0000024 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889
JBrowse link
G Slamf8 SLAM family member 8 acts_upstream_of_or_within ISO MGI:5442794 (MGI:5442671|PMID:22593622) RGD PMID:22593622 MGI:5442671 NCBI chr13:85,047,729...85,057,571
Ensembl chr13:85,047,727...85,057,211
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO MGI:3852642 (MGI:3850356|PMID:19549681) RGD PMID:19549681 MGI:3850356 NCBI chr 1:201,127,034...201,138,787
Ensembl chr 1:201,127,034...201,138,742
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18737
    cellular process 17432
      cellular component organization or biogenesis 6534
        cellular component organization 6309
          organelle organization 3900
            phagosome maturation 26
              phagosome acidification 6
                phagosome acidification involved in apoptotic cell clearance 0
Path 2
Term Annotations click to browse term
  biological_process 18737
    biological regulation 13318
      regulation of biological quality 4232
        homeostatic process 1900
          chemical homeostasis 1198
            ion homeostasis 663
              cation homeostasis 637
                monovalent inorganic cation homeostasis 168
                  regulation of pH 97
                    regulation of cellular pH 84
                      regulation of intracellular pH 75
                        intracellular pH reduction 41
                          phagosome acidification 6
                            phagosome acidification involved in apoptotic cell clearance 0
paths to the root