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ONTOLOGY REPORT - ANNOTATIONS

Term:phagosome maturation
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Accession:GO:0090382 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the arrangement of constituent parts of a phagosome within a cell. Phagosome maturation begins with endocytosis and formation of the early phagosome and ends with the formation of the hybrid organelle, the phagolysosome.


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phagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MCOLN1 mucolipin TRP cation channel 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:71,602,888...71,613,331
Ensembl chr 2:71,602,770...71,613,312 		JBrowse link
G MREG melanoregulin involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:118,208,681...118,273,725
Ensembl chr15:118,208,684...118,273,680 		JBrowse link
G PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:111,372,148...111,468,720
Ensembl chr15:111,372,173...111,467,899 		JBrowse link
G RAB14 RAB14, member RAS oncogene family involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:261,228,112...261,256,913
Ensembl chr 1:261,229,535...261,256,791 		JBrowse link
G RAB31 RAB31, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:98,278,644...98,385,857
Ensembl chr 6:98,278,647...98,385,795 		JBrowse link
G RAB32 RAB32, member RAS oncogene family involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:19,076,301...19,097,647
Ensembl chr 1:19,075,271...19,097,870 		JBrowse link
G RAB34 RAB34, member RAS oncogene family involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr12:44,951,989...44,956,458
Ensembl chr12:44,951,210...44,956,119 		JBrowse link
G RAB43 RAB43, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:71,564,250...71,596,318
Ensembl chr13:71,562,350...71,596,249 		JBrowse link
G SLC9A9 solute carrier family 9 member A9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:83,962,613...84,636,878
Ensembl chr13:83,962,618...84,502,327 		JBrowse link
G UNC13B unc-13 homolog B involved_in ISO (MGI:5467668|PMID:23197834) ParkinsonsUK-UCL PMID:23197834 MGI:5467668 NCBI chr 1:235,918,751...236,158,098
Ensembl chr 1:235,918,747...236,158,098 		JBrowse link
phagolysosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CORO1A coronin 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:18,336,813...18,342,381
Ensembl chr 3:18,336,898...18,342,396 		JBrowse link
G MYO7A myosin VIIA involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12743369) Ensembl
MGI		 PMID:12743369 GO_REF:0000107 NCBI chr 9:11,251,187...11,337,618
Ensembl chr 9:11,249,075...11,666,296 		JBrowse link
G P2RX7 purinergic receptor P2X 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11544318) Ensembl
MGI		 PMID:11544318 GO_REF:0000107 NCBI chr14:31,415,188...31,476,502
Ensembl chr14:31,415,193...31,476,472 		JBrowse link
G SRPX sushi repeat containing protein X-linked involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:19368996) Ensembl
MGI
TreeGrafter
GO_Central		 PMID:19368996 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:34,075,577...34,198,462
Ensembl chr  X:34,075,579...34,198,467 		JBrowse link
phagolysosome assembly involved in apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAB14 RAB14, member RAS oncogene family involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:261,228,112...261,256,913
Ensembl chr 1:261,229,535...261,256,791 		JBrowse link
phagosome acidification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAB20 RAB20, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:77,167,052...77,188,893
Ensembl chr11:77,167,059...77,188,898 		JBrowse link
G RAB38 RAB38, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:21,577,083...21,640,637
Ensembl chr 9:21,577,033...21,640,115 		JBrowse link
G RAB39A RAB39A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:36,341,339...36,403,690
Ensembl chr 9:36,341,339...36,403,654 		JBrowse link
G RAB7A RAB7A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:71,777,422...71,886,758
Ensembl chr13:71,777,424...71,852,694 		JBrowse link
G SLAMF8 SLAM family member 8 acts_upstream_of_or_within ISO (PMID:22593622) MGI PMID:22593622 NCBI chr 4:90,661,984...90,673,044
Ensembl chr 4:90,661,985...90,672,572 		JBrowse link
G SLC4A7 solute carrier family 4 member 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:13,933,552...14,043,108
Ensembl chr13:13,933,711...14,043,058 		JBrowse link
G TCIRG1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19549681) Ensembl
MGI		 PMID:19549681 GO_REF:0000107 NCBI chr 2:4,844,627...4,860,562
Ensembl chr 2:4,844,637...4,860,498 		JBrowse link
phagosome-lysosome docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:18,433,564...18,450,296
Ensembl chr 3:18,433,836...18,450,290 		JBrowse link
phagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARL8B ADP ribosylation factor like GTPase 8B involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:61,640,619...61,696,819
Ensembl chr13:61,640,671...61,698,374 		JBrowse link
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:18,433,564...18,450,296
Ensembl chr 3:18,433,836...18,450,290 		JBrowse link
G DNAJC27 DnaJ heat shock protein family (Hsp40) member C27 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 3:113,816,718...113,857,117
Ensembl chr 3:113,816,772...113,857,113 		JBrowse link
G PIKFYVE phosphoinositide kinase, FYVE-type zinc finger containing involved_in IEA
IBA		 Ensembl
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr15:111,372,148...111,468,720
Ensembl chr15:111,372,173...111,467,899 		JBrowse link
G PLA2G5 phospholipase A2 group V involved_in ISO (MGI:3841317|PMID:19342668) UniProt PMID:19342668 MGI:3841317 NCBI chr 6:78,365,697...78,376,383
Ensembl chr 6:78,302,062...78,376,220 		JBrowse link
G RAB20 RAB20, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:77,167,052...77,188,893
Ensembl chr11:77,167,059...77,188,898 		JBrowse link
G RAB29 RAB29, member RAS oncogene family involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:66,448,854...66,458,766
Ensembl chr 9:66,448,953...66,458,724 		JBrowse link
G RAB34 RAB34, member RAS oncogene family involved_in ISS
IBA
IEA		 UniProt
GO_Central
TreeGrafter
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr12:44,951,989...44,956,458
Ensembl chr12:44,951,210...44,956,119 		JBrowse link
G RAB38 RAB38, member RAS oncogene family involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:21,577,083...21,640,637
Ensembl chr 9:21,577,033...21,640,115 		JBrowse link
G RAB39A RAB39A, member RAS oncogene family involved_in IEA
IBA		 Ensembl
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:36,341,339...36,403,690
Ensembl chr 9:36,341,339...36,403,654 		JBrowse link
G RAB7A RAB7A, member RAS oncogene family involved_in IEA
IBA		 Ensembl
GO_Central
TreeGrafter		 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr13:71,777,422...71,886,758
Ensembl chr13:71,777,424...71,852,694 		JBrowse link
G RAB7B RAB7B, member RAS oncogene family involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:66,635,636...66,666,034
Ensembl chr 9:66,635,638...66,666,036 		JBrowse link
G SYT7 synaptotagmin 7 involved_in ISO (MGI:3690533|PMID:16982801) UniProt PMID:16982801 MGI:3690533 NCBI chr 2:9,947,962...10,012,713
Ensembl chr 2:9,947,925...10,012,496 		JBrowse link
G TMEM175 transmembrane protein 175 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:295,693...313,974
Ensembl chr 8:297,007...313,972 		JBrowse link
phagosome-lysosome fusion involved in apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SPG11 SPG11 vesicle trafficking associated, spatacsin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26284655) Ensembl
MGI		 PMID:26284655 GO_REF:0000107 NCBI chr 1:126,890,464...126,998,014
Ensembl chr 1:126,902,186...127,003,397
Ensembl chr 1:126,902,186...127,003,397 		JBrowse link
positive regulation of phagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLA2G5 phospholipase A2 group V involved_in ISO (MGI:3841317|PMID:19342668) UniProt PMID:19342668 MGI:3841317 NCBI chr 6:78,365,697...78,376,383
Ensembl chr 6:78,302,062...78,376,220 		JBrowse link
regulation of phagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:18,433,564...18,450,296
Ensembl chr 3:18,433,836...18,450,290 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17799
    cellular process 16838
      cellular component organization or biogenesis 6723
        cellular component organization 6509
          organelle organization 3633
            phagosome maturation 30
              negative regulation of phagosome maturation 0
              phagolysosome assembly + 20
              phagosome acidification + 7
              phagosome maturation involved in apoptotic cell clearance + 2
              phagosome reneutralization 0
              positive regulation of phagosome maturation 1
              regulation of phagosome maturation + 2
paths to the root