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ONTOLOGY REPORT - ANNOTATIONS

Term:phagosome maturation
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Accession:GO:0090382 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the arrangement of constituent parts of a phagosome within a cell. Phagosome maturation begins with endocytosis and formation of the early phagosome and ends with the formation of the hybrid organelle, the phagolysosome.

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phagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcoln1 mucolipin TRP cation channel 1 involved_in ISO (PMID:27623384) UniProt PMID:27623384 NCBI chrNW_004624828:634,318...643,406
Ensembl chrNW_004624828:634,214...643,633 		JBrowse link
G Mreg melanoregulin involved_in ISO (PMID:19240024) UniProt PMID:19240024 NCBI chrNW_004624765:4,139...38,006
Ensembl chrNW_004624765:4,140...36,386 		JBrowse link
G Mtmr4 myotubularin related protein 4 involved_in ISO (PMID:31543504) UniProt PMID:31543504 NCBI chrNW_004624871:302,589...328,773
Ensembl chrNW_004624871:302,588...328,623 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO (PMID:27623384) UniProt PMID:27623384 NCBI chrNW_004624765:7,684,770...7,806,381
Ensembl chrNW_004624765:7,681,875...7,790,704 		JBrowse link
G Rab14 RAB14, member RAS oncogene family involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624760:14,069,403...14,096,684
Ensembl chrNW_004624760:14,069,387...14,096,684 		JBrowse link
G Rab31 RAB31, member RAS oncogene family involved_in ISO (PMID:21255211) UniProt PMID:21255211 NCBI chrNW_004624770:18,285,140...18,372,389
Ensembl chrNW_004624770:18,285,132...18,372,650 		JBrowse link
G Rab32 RAB32, member RAS oncogene family involved_in ISO (PMID:21255211) UniProt PMID:21255211 NCBI chrNW_004624753:7,900,027...7,917,944
Ensembl chrNW_004624753:7,900,267...7,917,854 		JBrowse link
G Rab34 RAB34, member RAS oncogene family involved_in ISO (PMID:21255211) UniProt PMID:21255211 NCBI chrNW_004624786:1,286,886...1,291,582
Ensembl chrNW_004624786:1,286,887...1,291,419 		JBrowse link
G Rab43 RAB43, member RAS oncogene family involved_in ISO (PMID:21255211) UniProt PMID:21255211 NCBI chrNW_004624943:991,802...1,024,434
Ensembl chrNW_004624943:991,682...1,024,434 		JBrowse link
G Slc9a9 solute carrier family 9 member A9 involved_in ISO (PMID:35716776) UniProt PMID:35716776 NCBI chrNW_004624730:19,902,504...20,514,138
Ensembl chrNW_004624730:19,902,620...20,514,160 		JBrowse link
G Unc13b unc-13 homolog B involved_in ISO (PMID:23197834) ParkinsonsUK-UCL PMID:23197834 NCBI chrNW_004624915:327,633...530,522
Ensembl chrNW_004624915:327,401...531,886 		JBrowse link
phagolysosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coro1a coronin 1A involved_in ISO (PMID:12132654) UniProt PMID:12132654 NCBI chrNW_004624782:13,106,416...13,111,394
Ensembl chrNW_004624782:13,105,153...13,111,357 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO (PMID:12743369) MGI PMID:12743369 NCBI chrNW_004624863:205,468...283,840
Ensembl chrNW_004624863:205,478...283,839 		JBrowse link
G P2rx7 purinergic receptor P2X 7 acts_upstream_of_or_within ISO (PMID:11544318) MGI PMID:11544318 NCBI chrNW_004624747:21,725,813...21,768,123
Ensembl chrNW_004624747:21,725,395...21,759,453 		JBrowse link
G Srpx sushi repeat containing protein X-linked involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19368996) TreeGrafter
MGI		 PMID:19368996 GO_REF:0000118 NCBI chrNW_004624762:17,240,899...17,347,430
Ensembl chrNW_004624762:17,240,816...17,347,523 		JBrowse link
phagosome acidification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab20 RAB20, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624793:2,180,803...2,199,420
Ensembl chrNW_004624793:2,180,419...2,198,962 		JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in ISO (PMID:21255211) UniProt PMID:21255211 NCBI chrNW_004624845:1,908,410...1,983,897
Ensembl chrNW_004624845:1,906,671...1,984,029 		JBrowse link
G Rab39a RAB39A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624784:2,679,281...2,709,514
Ensembl chrNW_004624784:2,679,225...2,710,545 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO (PMID:21255211) UniProt PMID:21255211 NCBI chrNW_004625042:56,509...112,519
Ensembl chrNW_004625042:56,517...112,612 		JBrowse link
G Slamf8 SLAM family member 8 acts_upstream_of_or_within ISO (PMID:22593622) MGI PMID:22593622 NCBI chrNW_004624794:1,418,727...1,428,836
Ensembl chrNW_004624794:1,418,228...1,429,561 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 involved_in ISO (PMID:29779931) UniProt PMID:29779931 NCBI chrNW_004624788:5,239,858...5,355,186
Ensembl chrNW_004624788:5,243,807...5,355,073 		JBrowse link
G Tcirg1 T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 acts_upstream_of_or_within ISO (PMID:19549681) MGI PMID:19549681 NCBI chrNW_004624767:18,809,626...18,820,360
Ensembl chrNW_004624767:18,809,689...18,820,390 		JBrowse link
phagosome-lysosome docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624782:12,995,277...13,004,980
Ensembl chrNW_004624782:12,995,277...13,005,087 		JBrowse link
phagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ARF like GTPase 8B involved_in ISO (PMID:21802320) UniProt PMID:21802320 NCBI chrNW_004624773:15,785,883...15,833,832
Ensembl chrNW_004624773:15,785,339...15,832,668 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624782:12,995,277...13,004,980
Ensembl chrNW_004624782:12,995,277...13,005,087 		JBrowse link
G Dnajc27 DnaJ heat shock protein family (Hsp40) member C27 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624738:7,265,899...7,306,848
Ensembl chrNW_004624738:7,265,907...7,306,822 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624765:7,684,770...7,806,381
Ensembl chrNW_004624765:7,681,875...7,790,704 		JBrowse link
G Pla2g5 phospholipase A2 group V involved_in ISO (PMID:19342668) UniProt PMID:19342668 NCBI chrNW_004624764:5,196,215...5,207,138
Ensembl chrNW_004624764:5,196,215...5,207,232 		JBrowse link
G Rab20 RAB20, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624793:2,180,803...2,199,420
Ensembl chrNW_004624793:2,180,419...2,198,962 		JBrowse link
G Rab29 RAB29, member RAS oncogene family involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624807:5,478,570...5,483,473
Ensembl chrNW_004624807:5,478,707...5,483,475 		JBrowse link
G Rab32 RAB32, member RAS oncogene family involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624753:7,900,027...7,917,944
Ensembl chrNW_004624753:7,900,267...7,917,854 		JBrowse link
G Rab34 RAB34, member RAS oncogene family involved_in ISO (PMID:21255211)
(PMID:23197834)		 UniProt
ParkinsonsUK-UCL		 PMID:21255211 PMID:23197834 NCBI chrNW_004624786:1,286,886...1,291,582
Ensembl chrNW_004624786:1,286,887...1,291,419 		JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624845:1,908,410...1,983,897
Ensembl chrNW_004624845:1,906,671...1,984,029 		JBrowse link
G Rab39a RAB39A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624784:2,679,281...2,709,514
Ensembl chrNW_004624784:2,679,225...2,710,545 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004625042:56,509...112,519
Ensembl chrNW_004625042:56,517...112,612 		JBrowse link
G Rab7b RAB7B, member RAS oncogene family involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624807:5,307,361...5,334,578
Ensembl chrNW_004624807:5,307,440...5,334,945 		JBrowse link
G Syt7 synaptotagmin 7 involved_in ISO (PMID:16982801) UniProt PMID:16982801 NCBI chrNW_004624926:722,201...765,834
Ensembl chrNW_004624926:722,224...765,033 		JBrowse link
G Tmem175 transmembrane protein 175 involved_in ISO (PMID:26317472) UniProt PMID:26317472 NCBI chrNW_004624755:26,190,547...26,200,512
Ensembl chrNW_004624755:26,190,547...26,207,793 		JBrowse link
phagosome-lysosome fusion involved in apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO (PMID:26284655) MGI PMID:26284655 NCBI chrNW_004624804:11,569,024...11,672,037
Ensembl chrNW_004624804:11,569,150...11,670,373 		JBrowse link
positive regulation of phagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pla2g5 phospholipase A2 group V involved_in ISO (PMID:19342668) UniProt PMID:19342668 NCBI chrNW_004624764:5,196,215...5,207,138
Ensembl chrNW_004624764:5,196,215...5,207,232 		JBrowse link
regulation of phagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624782:12,995,277...13,004,980
Ensembl chrNW_004624782:12,995,277...13,005,087 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17650
    cellular process 17226
      cellular component organization or biogenesis 7005
        cellular component organization 6802
          organelle organization 3445
            phagosome maturation 31
              negative regulation of phagosome maturation 0
              phagolysosome assembly + 20
              phagosome acidification + 7
              phagosome maturation involved in apoptotic cell clearance + 1
              phagosome reneutralization 0
              positive regulation of phagosome maturation 1
              regulation of phagosome maturation + 2
paths to the root