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ONTOLOGY REPORT - ANNOTATIONS

Term:phagosome maturation
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Accession:GO:0090382 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the arrangement of constituent parts of a phagosome within a cell. Phagosome maturation begins with endocytosis and formation of the early phagosome and ends with the formation of the hybrid organelle, the phagolysosome.


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phagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mcoln1 mucolipin TRP cation channel 1 involved_in ISO (PMID:27623384) RGD PMID:27623384 NCBI chr12:1,560,341...1,574,252
Ensembl chr12:1,560,359...1,574,252 		JBrowse link
G Mreg melanoregulin involved_in ISO (PMID:19240024) RGD PMID:19240024 NCBI chr 9:73,786,727...73,842,081
Ensembl chr 9:73,787,267...73,842,087 		JBrowse link
G Mtmr4 myotubularin related protein 4 involved_in ISO (PMID:31543504) RGD PMID:31543504 NCBI chr10:72,393,411...72,416,342
Ensembl chr10:72,392,551...72,416,342 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO (PMID:27623384) RGD PMID:27623384 NCBI chr 9:66,563,747...66,657,873
Ensembl chr 9:66,563,727...66,657,868 		JBrowse link
G Rab14 RAB14, member RAS oncogene family involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:18,501,953...18,523,253
Ensembl chr 3:18,501,963...18,523,172 		JBrowse link
G Rab31 RAB31, member RAS oncogene family involved_in IEA
ISS
ISO		 GO_REF:0000107
GO_REF:0000024
(PMID:21255211)		 Ensembl
UniProt
RGD		 PMID:21255211 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:105,246,712...105,382,973
Ensembl chr 9:105,246,709...105,381,253 		JBrowse link
G Rab32 RAB32, member RAS oncogene family involved_in ISO (PMID:21255211) RGD PMID:21255211 NCBI chr 1:4,946,193...4,961,003
Ensembl chr 1:4,945,036...4,960,934 		JBrowse link
G Rab34 RAB34, member RAS oncogene family involved_in ISS
ISO		 GO_REF:0000024
(PMID:21255211)		 UniProt
RGD		 PMID:21255211 GO_REF:0000024 NCBI chr10:63,083,319...63,087,538
Ensembl chr10:63,083,338...63,087,538 		JBrowse link
G Rab43 RAB43, member RAS oncogene family involved_in ISO
ISS		 (PMID:21255211)
GO_REF:0000024		 RGD
UniProt		 PMID:21255211 GO_REF:0000024 NCBI chr 4:120,249,650...120,269,174
Ensembl chr 4:120,249,879...120,269,174 		JBrowse link
G Slc9a9 solute carrier family 9 member A9 involved_in ISO (PMID:35716776) RGD PMID:35716776 NCBI chr 8:95,232,889...95,797,262
Ensembl chr 8:95,232,905...95,796,318 		JBrowse link
G Unc13b unc-13 homolog B involved_in ISO (PMID:23197834) RGD PMID:23197834 NCBI chr 5:57,288,999...57,504,110
Ensembl chr 5:57,289,227...57,502,926 		JBrowse link
phagolysosome assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Coro1a coronin 1A involved_in ISO (PMID:12132654) RGD PMID:12132654 NCBI chr 1:181,295,561...181,300,566
Ensembl chr 1:181,295,562...181,300,534 		JBrowse link
G Myo7a myosin VIIA acts_upstream_of_or_within ISO MGI:2155422 (PMID:12743369) RGD PMID:12743369 NCBI chr 1:152,342,611...152,414,171
Ensembl chr 1:152,344,448...152,414,157 		JBrowse link
G P2rx7 purinergic receptor P2X 7 acts_upstream_of_or_within ISO MGI:3606250 (PMID:11544318) RGD PMID:11544318 NCBI chr12:33,889,709...33,934,168
Ensembl chr12:33,879,745...33,934,619 		JBrowse link
G Rab14 RAB14, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:18,501,953...18,523,253
Ensembl chr 3:18,501,963...18,523,172 		JBrowse link
G Srpx sushi-repeat-containing protein, X-linked involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:3706175 (PMID:19368996)		 GO_Central
RGD		 PMID:19368996 GO_REF:0000033 NCBI chr  X:12,676,984...12,751,296
Ensembl chr  X:12,566,645...12,747,882 		JBrowse link
phagosome acidification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rab20 RAB20, member RAS oncogene family involved_in ISO (PMID:21255211) RGD PMID:21255211 NCBI chr16:78,019,337...78,043,529
Ensembl chr16:78,019,337...78,043,529 		JBrowse link
G Rab38 RAB38, member RAS oncogene family involved_in ISO (PMID:21255211) RGD PMID:21255211 NCBI chr 1:142,182,566...142,262,923
Ensembl chr 1:142,182,556...142,262,924 		JBrowse link
G Rab39a RAB39A, member RAS oncogene family involved_in ISO (PMID:21255211) RGD PMID:21255211 NCBI chr 8:54,088,246...54,105,867
Ensembl chr 8:54,088,129...54,106,483 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO
ISS		 (PMID:21255211)
GO_REF:0000024		 RGD
UniProt		 PMID:21255211 GO_REF:0000024 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889 		JBrowse link
G Slamf8 SLAM family member 8 acts_upstream_of_or_within ISO MGI:5442794 (PMID:22593622) RGD PMID:22593622 NCBI chr13:85,047,729...85,057,571
Ensembl chr13:85,047,727...85,057,211 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 involved_in ISO (PMID:29779931) RGD PMID:29779931 NCBI chr15:10,585,307...10,664,780
Ensembl chr15:10,588,979...10,664,781 		JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO MGI:3852642 (PMID:19549681) RGD PMID:19549681 NCBI chr 1:201,127,034...201,138,787
Ensembl chr 1:201,127,034...201,138,742 		JBrowse link
phagosome-lysosome docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:26450516) RGD PMID:26450516 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434 		JBrowse link
phagosome-lysosome fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl8b ARF like GTPase 8B involved_in ISS
ISO		 GO_REF:0000024
(PMID:21802320)		 UniProt
RGD		 PMID:21802320 GO_REF:0000024 NCBI chr 4:141,748,634...141,792,605
Ensembl chr 4:141,748,587...141,792,596 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:26450516) RGD PMID:26450516 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO
IBA		 (PMID:28779020)
GO_REF:0000033		 RGD
GO_Central		 PMID:28779020 GO_REF:0000033 NCBI chr 9:66,563,747...66,657,873
Ensembl chr 9:66,563,727...66,657,868 		JBrowse link
G Pla2g5 phospholipase A2, group V involved_in ISS
ISO		 GO_REF:0000024
(PMID:19342668)		 UniProt
RGD		 PMID:19342668 GO_REF:0000024 NCBI chr 5:151,041,339...151,109,433
Ensembl chr 5:151,041,340...151,062,658 		JBrowse link
G Rab20 RAB20, member RAS oncogene family involved_in ISO (PMID:21255211) RGD PMID:21255211 NCBI chr16:78,019,337...78,043,529
Ensembl chr16:78,019,337...78,043,529 		JBrowse link
G Rab34 RAB34, member RAS oncogene family involved_in ISS
ISO
IBA
IEA		 GO_REF:0000024
(PMID:23197834)
GO_REF:0000033
GO_REF:0000107
(PMID:21255211)		 UniProt
RGD
GO_Central
Ensembl		 PMID:21255211 PMID:23197834 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr10:63,083,319...63,087,538
Ensembl chr10:63,083,338...63,087,538 		JBrowse link
G Rab39a RAB39A, member RAS oncogene family involved_in ISO
IBA		 (PMID:21255211)
GO_REF:0000033		 RGD
GO_Central		 PMID:21255211 GO_REF:0000033 NCBI chr 8:54,088,246...54,105,867
Ensembl chr 8:54,088,129...54,106,483 		JBrowse link
G Rab7a RAB7A, member RAS oncogene family involved_in ISO
IBA
ISS		 (PMID:21255211)
GO_REF:0000033
GO_REF:0000024		 RGD
GO_Central
UniProt		 PMID:21255211 GO_REF:0000024 GO_REF:0000033 NCBI chr 4:120,461,966...120,510,756
Ensembl chr 4:120,461,963...120,506,889 		JBrowse link
G Rab7b Rab7b, member RAS oncogene family involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:43,121,168...43,147,581
Ensembl chr13:43,121,226...43,147,581 		JBrowse link
G Syt7 synaptotagmin 7 involved_in ISS
ISO		 GO_REF:0000024
(PMID:16982801)		 UniProt
RGD		 PMID:16982801 GO_REF:0000024 NCBI chr 1:207,031,359...207,093,787
Ensembl chr 1:207,031,592...207,089,026 		JBrowse link
G Tmem175 transmembrane protein 175 involved_in ISS
ISO		 GO_REF:0000024
(PMID:26317472)		 UniProt
RGD		 PMID:26317472 GO_REF:0000024 NCBI chr14:1,073,410...1,089,764
Ensembl chr14:1,073,523...1,089,819 		JBrowse link
phagosome-lysosome fusion involved in apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO MGI:4377985 (PMID:26284655) RGD PMID:26284655 NCBI chr 3:109,007,658...109,072,904
Ensembl chr 3:109,008,135...109,072,911 		JBrowse link
positive regulation of phagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pla2g5 phospholipase A2, group V involved_in ISS
ISO		 GO_REF:0000024
(PMID:19342668)		 UniProt
RGD		 PMID:19342668 GO_REF:0000024 NCBI chr 5:151,041,339...151,109,433
Ensembl chr 5:151,041,340...151,062,658 		JBrowse link
regulation of phagosome maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:26450516) RGD PMID:26450516 NCBI chr 1:181,156,071...181,169,458
Ensembl chr 1:181,156,073...181,167,434 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20076
    cellular process 19155
      cellular component organization or biogenesis 7178
        cellular component organization 6923
          organelle organization 3702
            phagosome maturation 29
              negative regulation of phagosome maturation 0
              phagolysosome assembly + 17
              phagosome acidification + 7
              phagosome maturation involved in apoptotic cell clearance + 1
              phagosome reneutralization 0
              positive regulation of phagosome maturation 1
              regulation of phagosome maturation + 2
paths to the root