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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of DNA-templated DNA replication
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Accession:GO:0090329 term browser browse the term
Definition:Any process that modulates the rate, frequency, or extent of DNA-templated DNA replication, the process in which new strands of DNA are synthesized.
Synonyms:exact_synonym: regulation of DNA-dependent DNA replication

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regulation of DNA-templated DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blm BLM RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936483:16,194,092...16,295,803
Ensembl chrNW_004936483:16,194,092...16,255,905 		JBrowse link
negative regulation of DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbxo5 F-box protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:5,589,621...5,602,221
Ensembl chrNW_004936489:5,589,538...5,600,539 		JBrowse link
negative regulation of DNA-templated DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdt1 chromatin licensing and DNA replication factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:916,695...925,411
Ensembl chrNW_004936641:917,435...920,981 		JBrowse link
G Gmnn geminin DNA replication inhibitor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936671:1,017,621...1,027,224
Ensembl chrNW_004936671:1,018,124...1,026,968 		JBrowse link
negative regulation of mitochondrial DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg7 autophagy related 7 ISO RGD PMID:23800874 RGD:11557986 NCBI chrNW_004936602:1,938,720...2,179,239
Ensembl chrNW_004936602:1,935,507...2,179,256 		JBrowse link
G Lig3 DNA ligase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936538:206,179...228,487
Ensembl chrNW_004936538:206,839...226,441 		JBrowse link
positive regulation of DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G E2f7 E2F transcription factor 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936568:5,206,135...5,245,324
Ensembl chrNW_004936568:5,206,135...5,244,450 		JBrowse link
G E2f8 E2F transcription factor 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936654:322,863...339,365
Ensembl chrNW_004936654:322,863...338,699 		JBrowse link
positive regulation of DNA-directed DNA polymerase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chtf18 chromosome transmission fidelity factor 18 involved_in ISO (PMID:12930902) UniProt PMID:12930902 NCBI chrNW_004936501:232,387...240,866 JBrowse link
G Chtf8 chromosome transmission fidelity factor 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:19,282,226...19,285,758
Ensembl chrNW_004936475:19,282,195...19,285,735 		JBrowse link
G Dscc1 DNA replication and sister chromatid cohesion 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:26,849,541...26,869,040
Ensembl chrNW_004936470:26,849,569...26,869,043 		JBrowse link
G Gins1 GINS complex subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936620:421,845...446,853
Ensembl chrNW_004936620:422,230...446,753 		JBrowse link
G Gins2 GINS complex subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:2,757,150...2,775,904
Ensembl chrNW_004936641:2,757,150...2,776,681 		JBrowse link
G Gins3 GINS complex subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:10,209,127...10,216,701
Ensembl chrNW_004936475:10,209,071...10,218,051 		JBrowse link
G Gins4 GINS complex subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936785:1,043,342...1,059,635
Ensembl chrNW_004936785:1,043,143...1,059,636 		JBrowse link
G Npm1 nucleophosmin 1 ISO RGD PMID:8123045 RGD:11535022 NCBI chrNW_004936609:3,712,628...3,725,635 JBrowse link
G Pcna proliferating cell nuclear antigen involved_in ISO (PMID:11595739) UniProt PMID:11595739 NCBI chrNW_004936485:13,766,221...13,771,215 JBrowse link
G Polg2 DNA polymerase gamma 2, accessory subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:4,988,469...5,004,110
Ensembl chrNW_004936541:4,988,368...5,003,922 		JBrowse link
G Rfc2 replication factor C subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936543:3,263,661...3,273,178
Ensembl chrNW_004936543:3,263,878...3,279,667 		JBrowse link
G Rfc3 replication factor C subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936472:28,274,997...28,295,349
Ensembl chrNW_004936472:28,278,069...28,299,226 		JBrowse link
G Rfc4 replication factor C subunit 4 involved_in ISO (PMID:12930902) UniProt PMID:12930902 NCBI chrNW_004936578:3,204,035...3,219,806 JBrowse link
G Rfc5 replication factor C subunit 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936558:4,736,332...4,747,323 JBrowse link
positive regulation of DNA-templated DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdt1 chromatin licensing and DNA replication factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:916,695...925,411
Ensembl chrNW_004936641:917,435...920,981 		JBrowse link
positive regulation of DNA-templated DNA replication initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk2 cyclin dependent kinase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4439421|PMID:20215406) MGI
Ensembl		 PMID:20215406 GO_REF:0000107 MGI:4439421 NCBI chrNW_004936646:379,849...385,648
Ensembl chrNW_004936646:379,842...385,877 		JBrowse link
G Ciz1 CDKN1A interacting zinc finger protein 1 acts_upstream_of_or_within ISO (MGI:3513706|PMID:15585571)
(MGI:4439421|PMID:20215406)		 MGI PMID:15585571 PMID:20215406 MGI:3513706 MGI:4439421 NCBI chrNW_004936487:15,728,982...15,748,737 JBrowse link
positive regulation of mitochondrial DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Endog endonuclease G involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936487:16,282,115...16,285,486
Ensembl chrNW_004936487:16,282,398...16,285,418 		JBrowse link
G Ssbp1 single stranded DNA binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936592:5,611,775...5,620,846
Ensembl chrNW_004936592:5,614,619...5,619,627 		JBrowse link
positive regulation of mitotic cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr1 fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO (MGI:79015|PMID:2161540) MGI PMID:2161540 MGI:79015 NCBI chrNW_004936710:1,760,365...1,815,269
Ensembl chrNW_004936710:1,760,089...1,815,508 		JBrowse link
positive regulation of nuclear cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atrx ATRX chromatin remodeler involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936683:2,496,307...2,718,539
Ensembl chrNW_004936683:2,495,959...2,718,620 		JBrowse link
G Cdc7 cell division cycle 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936537:7,445,882...7,515,196
Ensembl chrNW_004936537:7,488,776...7,514,322 		JBrowse link
G Dbf4b DBF4 zinc finger B involved_in ISO (PMID:15668232) UniProt PMID:15668232 NCBI chrNW_004936541:1,108,577...1,133,203 JBrowse link
G Ino80 INO80 complex ATPase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:4,374,802...4,478,894
Ensembl chrNW_004936471:4,375,395...4,478,899 		JBrowse link
G Wiz WIZ zinc finger involved_in ISO (PMID:23545495) UniProt PMID:23545495 NCBI chrNW_004936596:5,061,674...5,084,931 JBrowse link
regulation of DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Senp2 SUMO specific peptidase 2 acts_upstream_of_or_within ISO (MGI:3831588|PMID:19090619) MGI PMID:19090619 MGI:3831588 NCBI chrNW_004936578:4,252,718...4,290,452
Ensembl chrNW_004936578:4,248,244...4,290,418 		JBrowse link
regulation of DNA-templated DNA replication initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdt1 chromatin licensing and DNA replication factor 1 involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chrNW_004936641:916,695...925,411
Ensembl chrNW_004936641:917,435...920,981 		JBrowse link
G Gmnn geminin DNA replication inhibitor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936671:1,017,621...1,027,224
Ensembl chrNW_004936671:1,018,124...1,026,968 		JBrowse link
G Kat7 lysine acetyltransferase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:11,775,224...11,805,489
Ensembl chrNW_004936490:11,772,046...11,805,759 		JBrowse link
G Mcidas multiciliate differentiation and DNA synthesis associated cell cycle protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936480:12,533,604...12,539,639
Ensembl chrNW_004936480:12,533,713...12,539,387 		JBrowse link
G Ticrr TOPBP1 interacting checkpoint and replication regulator involved_in ISO (PMID:20116089) UniProt PMID:20116089 NCBI chrNW_004936483:15,381,486...15,422,600 JBrowse link
G Wrnip1 WRN helicase interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936633:3,853,201...3,873,983
Ensembl chrNW_004936633:3,853,058...3,874,121 		JBrowse link
regulation of mitochondrial DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl4 methyltransferase 4, N6-adenosine involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936672:1,911,109...1,940,897
Ensembl chrNW_004936672:1,910,851...1,941,520 		JBrowse link
regulation of mitotic cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3583382|PMID:15980864) MGI
Ensembl		 PMID:15980864 GO_REF:0000107 MGI:3583382 NCBI chrNW_004936474:22,035,059...22,077,846
Ensembl chrNW_004936474:22,034,801...22,077,986 		JBrowse link
regulation of nuclear cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aicda activation induced cytidine deaminase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936870:25,039...34,601
Ensembl chrNW_004936870:25,039...34,601 		JBrowse link
G Cdt1 chromatin licensing and DNA replication factor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2159541|PMID:11850834) MGI
Ensembl		 PMID:11850834 GO_REF:0000107 MGI:2159541 NCBI chrNW_004936641:916,695...925,411
Ensembl chrNW_004936641:917,435...920,981 		JBrowse link
G Dach1 dachshund family transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936511:8,899,245...9,253,024
Ensembl chrNW_004936511:9,061,676...9,253,486 		JBrowse link
G Ilkap ILK associated serine/threonine phosphatase ISO RGD PMID:9857069 RGD:632254 NCBI chrNW_004936525:303,436...322,677
Ensembl chrNW_004936525:303,499...322,563 		JBrowse link
G Nuggc nuclear GTPase, germinal center associated involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936675:885,015...931,657
Ensembl chrNW_004936675:885,039...920,253 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15030
    metabolic process 9428
      regulation of metabolic process 5583
        regulation of macromolecule metabolic process 4871
          regulation of DNA metabolic process 462
            regulation of DNA replication 125
              regulation of DNA-templated DNA replication 43
                negative regulation of DNA-templated DNA replication + 5
                positive regulation of DNA-templated DNA replication + 13
                regulation of DNA endoreduplication + 4
                regulation of DNA replication termination + 0
                regulation of DNA-directed DNA polymerase activity + 14
                regulation of DNA-templated DNA replication initiation + 8
                regulation of mitochondrial DNA replication + 5
                regulation of nuclear cell cycle DNA replication + 12
                regulation of replication fork arrest at rDNA repeats 0
Path 2
Term Annotations click to browse term
  biological_process 15030
    metabolic process 9428
      organic substance metabolic process 9063
        organic cyclic compound metabolic process 2704
          nucleobase-containing compound metabolic process 2271
            nucleic acid metabolic process 1847
              DNA metabolic process 869
                regulation of DNA metabolic process 462
                  regulation of DNA replication 125
                    regulation of DNA-templated DNA replication 43
                      negative regulation of DNA-templated DNA replication + 5
                      positive regulation of DNA-templated DNA replication + 13
                      regulation of DNA endoreduplication + 4
                      regulation of DNA replication termination + 0
                      regulation of DNA-directed DNA polymerase activity + 14
                      regulation of DNA-templated DNA replication initiation + 8
                      regulation of mitochondrial DNA replication + 5
                      regulation of nuclear cell cycle DNA replication + 12
                      regulation of replication fork arrest at rDNA repeats 0
paths to the root