Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of DNA-templated DNA replication
go back to main search page
Accession:GO:0090329 term browser browse the term
Definition:Any process that modulates the rate, frequency, or extent of DNA-templated DNA replication, the process in which new strands of DNA are synthesized.
Synonyms:exact_synonym: regulation of DNA-dependent DNA replication


show annotations for term's descendants           Sort by:
regulation of DNA-templated DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLM BLM RecQ like helicase involved_in IMP (PMID:25901030) UniProt PMID:25901030 NCBI chr15:90,717,346...90,816,166
Ensembl chr15:90,717,346...90,816,166 		JBrowse link
negative regulation of DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBXO5 F-box protein 5 involved_in IMP (PMID:17875940) UniProt PMID:17875940 NCBI chr 6:152,970,535...152,983,579
Ensembl chr 6:152,970,519...152,983,579 		JBrowse link
negative regulation of DNA-templated DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDT1 chromatin licensing and DNA replication factor 1 involved_in IDA (PMID:19906994) ComplexPortal PMID:19906994 NCBI chr16:88,803,789...88,809,258
Ensembl chr16:88,803,789...88,809,258 		JBrowse link
G GMNN geminin DNA replication inhibitor involved_in IDA (PMID:11125146), (PMID:19906994) ComplexPortal PMID:11125146 PMID:19906994 NCBI chr 6:24,774,937...24,786,099
Ensembl chr 6:24,774,931...24,786,099 		JBrowse link
negative regulation of mitochondrial DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG7 autophagy related 7 ISO RGD PMID:23800874 RGD:11557986 NCBI chr 3:11,272,397...11,576,353
Ensembl chr 3:11,272,309...11,557,665 		JBrowse link
G LIG3 DNA ligase 3 involved_in IMP (PMID:21878356) CACAO PMID:21878356 NCBI chr17:34,980,512...35,010,872
Ensembl chr17:34,980,512...35,009,743 		JBrowse link
negative regulation of mitotic cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL6 BCL6 transcription repressor involved_in NAS (PMID:10490843) UniProt PMID:10490843 NCBI chr 3:187,721,377...187,745,468
Ensembl chr 3:187,721,377...187,745,725 		JBrowse link
positive regulation of DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G E2F7 E2F transcription factor 7 involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr12:77,021,251...77,065,569
Ensembl chr12:77,021,248...77,065,569 		JBrowse link
G E2F8 E2F transcription factor 8 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr11:19,224,063...19,241,655
Ensembl chr11:19,224,063...19,241,620 		JBrowse link
positive regulation of DNA-directed DNA polymerase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHTF18 chromosome transmission fidelity factor 18 involved_in IDA (PMID:12930902) UniProt PMID:12930902 NCBI chr16:788,620...798,074
Ensembl chr16:788,046...800,737 		JBrowse link
G CHTF8 chromosome transmission fidelity factor 8 involved_in IDA (PMID:12930902) UniProt PMID:12930902 NCBI chr16:69,118,010...69,132,588
Ensembl chr16:69,118,010...69,132,588 		JBrowse link
G DSCC1 DNA replication and sister chromatid cohesion 1 involved_in IDA (PMID:12930902) UniProt PMID:12930902 NCBI chr 8:119,833,976...119,855,894
Ensembl chr 8:119,833,976...119,855,894 		JBrowse link
G GINS1 GINS complex subunit 1 involved_in IDA (PMID:17170760) ComplexPortal PMID:17170760 NCBI chr20:25,407,673...25,448,563
Ensembl chr20:25,391,008...25,452,700 		JBrowse link
G GINS2 GINS complex subunit 2 involved_in IDA (PMID:17170760) ComplexPortal PMID:17170760 NCBI chr16:85,676,198...85,688,954
Ensembl chr16:85,676,198...85,690,073 		JBrowse link
G GINS3 GINS complex subunit 3 involved_in IDA (PMID:17170760) ComplexPortal PMID:17170760 NCBI chr16:58,392,471...58,406,147
Ensembl chr16:58,295,080...58,406,147 		JBrowse link
G GINS4 GINS complex subunit 4 involved_in IDA (PMID:17170760) ComplexPortal PMID:17170760 NCBI chr 8:41,529,261...41,545,030
Ensembl chr 8:41,529,218...41,545,030 		JBrowse link
G NPM1 nucleophosmin 1 ISO RGD PMID:8123045 RGD:11535022 NCBI chr 5:171,387,116...171,410,900
Ensembl chr 5:171,387,116...171,411,810 		JBrowse link
G PCNA proliferating cell nuclear antigen involved_in IMP (PMID:11595739) UniProt PMID:11595739 NCBI chr20:5,114,953...5,126,622
Ensembl chr20:5,114,953...5,126,626 		JBrowse link
G POLG2 DNA polymerase gamma 2, accessory subunit involved_in IDA (PMID:10608893), (PMID:19837034), (PMID:19858216), (PMID:26123486) FlyBase PMID:10608893 PMID:19837034 PMID:19858216 PMID:26123486 NCBI chr17:64,477,785...64,497,054
Ensembl chr17:64,477,785...64,497,054 		JBrowse link
G RFC2 replication factor C subunit 2 involved_in IDA (PMID:12930902) UniProt PMID:12930902 NCBI chr 7:74,231,502...74,254,399
Ensembl chr 7:74,231,499...74,254,458 		JBrowse link
G RFC3 replication factor C subunit 3 involved_in IDA (PMID:12930902) UniProt PMID:12930902 NCBI chr13:33,818,149...33,977,377
Ensembl chr13:33,818,069...33,966,558 		JBrowse link
G RFC4 replication factor C subunit 4 involved_in IDA (PMID:12930902) UniProt PMID:12930902 NCBI chr 3:186,789,900...186,806,482
Ensembl chr 3:186,789,880...186,807,058 		JBrowse link
G RFC5 replication factor C subunit 5 involved_in IDA (PMID:12930902) UniProt PMID:12930902 NCBI chr12:118,016,703...118,041,448
Ensembl chr12:118,013,588...118,033,130 		JBrowse link
positive regulation of DNA-templated DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDT1 chromatin licensing and DNA replication factor 1 involved_in IDA (PMID:11125146) CAFA PMID:11125146 NCBI chr16:88,803,789...88,809,258
Ensembl chr16:88,803,789...88,809,258 		JBrowse link
positive regulation of DNA-templated DNA replication initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK2 cyclin dependent kinase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4439421|PMID:20215406) MGI
Ensembl		 PMID:20215406 GO_REF:0000107 MGI:4439421 NCBI chr12:55,966,830...55,972,789
Ensembl chr12:55,966,781...55,972,789 		JBrowse link
G CIZ1 CDKN1A interacting zinc finger protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4439421|PMID:20215406)
(MGI:3513706|PMID:15585571)		 MGI
Ensembl		 PMID:15585571 PMID:20215406 GO_REF:0000107 MGI:3513706 MGI:4439421 NCBI chr 9:128,166,065...128,204,222
Ensembl chr 9:128,161,251...128,204,383 		JBrowse link
positive regulation of mitochondrial DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENDOG endonuclease G involved_in IMP (PMID:29719607) UniProt PMID:29719607 NCBI chr 9:128,818,500...128,822,676
Ensembl chr 9:128,818,500...128,822,676 		JBrowse link
G SSBP1 single stranded DNA binding protein 1 involved_in IDA (PMID:31550240) UniProt PMID:31550240 NCBI chr 7:141,738,321...141,750,488
Ensembl chr 7:141,738,334...141,787,922 		JBrowse link
positive regulation of mitotic cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGFR1 fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO (MGI:79015|PMID:2161540) MGI PMID:2161540 MGI:79015 NCBI chr 8:38,411,143...38,468,635
Ensembl chr 8:38,400,215...38,468,834 		JBrowse link
positive regulation of nuclear cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATRX ATRX chromatin remodeler involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:77,504,880...77,786,216
Ensembl chr  X:77,504,880...77,786,233 		JBrowse link
G CDC7 cell division cycle 7 involved_in IMP (PMID:15668232) UniProt PMID:15668232 NCBI chr 1:91,500,851...91,525,764
Ensembl chr 1:91,500,851...91,525,764 		JBrowse link
G DBF4 DBF4 zinc finger involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:87,876,493...87,909,553
Ensembl chr 7:87,876,216...87,909,553 		JBrowse link
G DBF4B DBF4 zinc finger B involved_in IBA
IMP		 (PMID:21873635)
(PMID:15668232)		 GO_Central
UniProt		 PMID:15668232 PMID:21873635 NCBI chr17:44,708,665...44,752,264
Ensembl chr17:44,708,608...44,752,264 		JBrowse link
G INO80 INO80 complex ATPase subunit involved_in IMP (PMID:20237820) UniProt PMID:20237820 NCBI chr15:40,978,880...41,116,280
Ensembl chr15:40,978,880...41,116,280 		JBrowse link
G WIZ WIZ zinc finger involved_in IMP (PMID:23545495) UniProt PMID:23545495 NCBI chr19:15,419,978...15,449,956
Ensembl chr19:15,419,978...15,449,956 		JBrowse link
regulation of DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SENP2 SUMO specific peptidase 2 acts_upstream_of_or_within ISO (MGI:3831588|PMID:19090619) MGI PMID:19090619 MGI:3831588 NCBI chr 3:185,586,295...185,633,551
Ensembl chr 3:185,582,496...185,633,551 		JBrowse link
regulation of DNA-templated DNA replication initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDT1 chromatin licensing and DNA replication factor 1 involved_in IDA
IBA
IEA		 (PMID:11125146)
(PMID:21873635)		 UniProt
GO_Central
InterPro
Ensembl		 PMID:11125146 PMID:21873635 GO_REF:0000002 GO_REF:0000107 NCBI chr16:88,803,789...88,809,258
Ensembl chr16:88,803,789...88,809,258 		JBrowse link
G GMNN geminin DNA replication inhibitor involved_in IDA (PMID:24064211) ComplexPortal PMID:24064211 NCBI chr 6:24,774,937...24,786,099
Ensembl chr 6:24,774,931...24,786,099 		JBrowse link
G KAT7 lysine acetyltransferase 7 involved_in IDA (PMID:26620551) UniProt PMID:26620551 NCBI chr17:49,788,681...49,835,026
Ensembl chr17:49,788,624...49,835,026 		JBrowse link
G MCIDAS multiciliate differentiation and DNA synthesis associated cell cycle protein involved_in IDA (PMID:24064211) ComplexPortal PMID:24064211 NCBI chr 5:55,219,564...55,227,315
Ensembl chr 5:55,219,564...55,227,315 		JBrowse link
G MCM2 minichromosome maintenance complex component 2 involved_in NAS (PMID:30069701) ComplexPortal PMID:30069701 NCBI chr 3:127,598,411...127,622,436
Ensembl chr 3:127,598,410...127,622,436 		JBrowse link
G MCM3 minichromosome maintenance complex component 3 involved_in NAS (PMID:30069701) ComplexPortal PMID:30069701 NCBI chr 6:52,264,015...52,284,742
Ensembl chr 6:52,264,014...52,284,881 		JBrowse link
G MCM4 minichromosome maintenance complex component 4 involved_in NAS (PMID:30069701) ComplexPortal PMID:30069701 NCBI chr 8:47,960,941...47,978,160
Ensembl chr 8:47,960,185...47,978,160 		JBrowse link
G MCM5 minichromosome maintenance complex component 5 involved_in NAS (PMID:30069701) ComplexPortal PMID:30069701 NCBI chr22:35,400,140...35,455,031
Ensembl chr22:35,400,134...35,425,431 		JBrowse link
G MCM6 minichromosome maintenance complex component 6 involved_in NAS (PMID:30069701) ComplexPortal PMID:30069701 NCBI chr 2:135,839,626...135,876,443
Ensembl chr 2:135,839,626...135,876,443 		JBrowse link
G MCM7 minichromosome maintenance complex component 7 involved_in NAS (PMID:30069701) ComplexPortal PMID:30069701 NCBI chr 7:100,092,728...100,101,397
Ensembl chr 7:100,092,728...100,101,940 		JBrowse link
G NBN nibrin involved_in TAS (PMID:9590181) UniProt PMID:9590181 NCBI chr 8:89,933,331...89,984,667
Ensembl chr 8:89,924,515...90,003,228 		JBrowse link
G TICRR TOPBP1 interacting checkpoint and replication regulator involved_in IBA
IMP		 (PMID:21873635)
(PMID:20116089)		 GO_Central
UniProt		 PMID:20116089 PMID:21873635 NCBI chr15:89,575,469...89,628,023
Ensembl chr15:89,575,469...89,631,056 		JBrowse link
G WRNIP1 WRN helicase interacting protein 1 involved_in IDA (PMID:15670210) UniProt PMID:15670210 NCBI chr 6:2,765,393...2,786,952
Ensembl chr 6:2,765,393...2,786,952 		JBrowse link
regulation of mitochondrial DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G METTL4 methyltransferase 4, N6-adenosine involved_in IMP (PMID:32183942) UniProt PMID:32183942 NCBI chr18:2,537,530...2,571,505
Ensembl chr18:2,537,525...2,571,509 		JBrowse link
regulation of mitotic cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZMPSTE24 zinc metallopeptidase STE24 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3583382|PMID:15980864) MGI
Ensembl		 PMID:15980864 GO_REF:0000107 MGI:3583382 NCBI chr 1:40,258,236...40,294,180
Ensembl chr 1:40,258,041...40,294,180 		JBrowse link
regulation of nuclear cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AICDA activation induced cytidine deaminase involved_in IMP (PMID:19734146) UniProt PMID:19734146 NCBI chr12:8,602,170...8,612,859
Ensembl chr12:8,602,155...8,613,242 		JBrowse link
G CDT1 chromatin licensing and DNA replication factor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2159541|PMID:11850834) MGI
Ensembl		 PMID:11850834 GO_REF:0000107 MGI:2159541 NCBI chr16:88,803,789...88,809,258
Ensembl chr16:88,803,789...88,809,258 		JBrowse link
G DACH1 dachshund family transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:71,437,966...71,867,204
Ensembl chr13:71,437,966...71,867,204 		JBrowse link
G ILKAP ILK associated serine/threonine phosphatase ISO RGD PMID:9857069 RGD:632254 NCBI chr 2:238,170,402...238,203,695
Ensembl chr 2:238,170,402...238,203,708 		JBrowse link
G NUGGC nuclear GTPase, germinal center associated involved_in IMP (PMID:19734146) UniProt PMID:19734146 NCBI chr 8:28,021,964...28,083,936
Ensembl chr 8:28,021,964...28,083,936 		JBrowse link
G TIPIN TIMELESS interacting protein involved_in TAS (PMID:17102137) HGNC-UCL PMID:17102137 NCBI chr15:66,336,191...66,386,717
Ensembl chr15:66,336,191...66,386,746 		JBrowse link
replication fork arrest term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAMSAP3 calmodulin regulated spectrin associated protein family member 3 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:7,595,863...7,618,304
Ensembl chr19:7,595,863...7,618,304 		JBrowse link
G SLFN11 schlafen family member 11 involved_in IDA (PMID:29395061) UniProt PMID:29395061 NCBI chr17:35,350,305...35,373,621
Ensembl chr17:35,350,305...35,373,701 		JBrowse link
G TIMELESS timeless circadian regulator involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:56,416,363...56,449,426
Ensembl chr12:56,416,363...56,449,426 		JBrowse link
G TIPIN TIMELESS interacting protein involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:66,336,191...66,386,717
Ensembl chr15:66,336,191...66,386,746 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19600
    metabolic process 12946
      regulation of metabolic process 7795
        regulation of macromolecule metabolic process 6888
          regulation of DNA metabolic process 592
            regulation of DNA replication 148
              regulation of DNA-templated DNA replication 56
                negative regulation of DNA-templated DNA replication + 10
                positive regulation of DNA-templated DNA replication + 14
                regulation of DNA endoreduplication + 4
                regulation of DNA replication termination + 0
                regulation of DNA-directed DNA polymerase activity + 14
                regulation of DNA-templated DNA replication initiation + 15
                regulation of mitochondrial DNA replication + 5
                regulation of nuclear cell cycle DNA replication + 15
                regulation of replication fork arrest at rDNA repeats 0
Path 2
Term Annotations click to browse term
  biological_process 19600
    metabolic process 12946
      organic substance metabolic process 12475
        organic cyclic compound metabolic process 4197
          nucleobase-containing compound metabolic process 3613
            nucleic acid metabolic process 3021
              DNA metabolic process 1125
                regulation of DNA metabolic process 592
                  regulation of DNA replication 148
                    regulation of DNA-templated DNA replication 56
                      negative regulation of DNA-templated DNA replication + 10
                      positive regulation of DNA-templated DNA replication + 14
                      regulation of DNA endoreduplication + 4
                      regulation of DNA replication termination + 0
                      regulation of DNA-directed DNA polymerase activity + 14
                      regulation of DNA-templated DNA replication initiation + 15
                      regulation of mitochondrial DNA replication + 5
                      regulation of nuclear cell cycle DNA replication + 15
                      regulation of replication fork arrest at rDNA repeats 0
paths to the root