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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of DNA-templated DNA replication
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Accession:GO:0090329 term browser browse the term
Definition:Any process that modulates the rate, frequency, or extent of DNA-templated DNA replication, the process in which new strands of DNA are synthesized.
Synonyms:exact_synonym: regulation of DNA-dependent DNA replication


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regulation of DNA-templated DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLM BLM RecQ like helicase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:53,408,120...53,506,728
Ensembl chr 3:53,408,217...53,473,146 		JBrowse link
negative regulation of DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBXO5 F-box protein 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:43,138,338...43,149,546
Ensembl chr 1:43,138,889...43,149,297 		JBrowse link
negative regulation of DNA strand resection involved in replication fork processing term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DYNLL1 dynein light chain LC8-type 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:16,369,878...16,402,302
Ensembl chr26:16,398,886...16,402,021
Ensembl chr26:16,398,886...16,402,021 		JBrowse link
negative regulation of DNA-templated DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDT1 chromatin licensing and DNA replication factor 1 involved_in ISO (PMID:19906994) ComplexPortal PMID:19906994 NCBI chr 5:64,566,035...64,570,361
Ensembl chr 5:64,566,043...64,570,748 		JBrowse link
G GMNN geminin DNA replication inhibitor involved_in IEA Ensembl GO_REF:0000107 NCBI chr35:22,796,558...22,805,961
Ensembl chr35:22,798,386...22,805,959 		JBrowse link
negative regulation of mitochondrial DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG7 autophagy related 7 ISO RGD PMID:23800874 RGD:11557986 NCBI chr20:6,916,354...7,154,849
Ensembl chr20:6,916,515...7,154,800 		JBrowse link
G LIG3 DNA ligase 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:38,346,275...38,366,634
Ensembl chr 9:38,346,199...38,366,193 		JBrowse link
positive regulation of DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G E2F7 E2F transcription factor 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:19,856,093...19,895,657
Ensembl chr15:19,857,227...19,895,225 		JBrowse link
G E2F8 E2F transcription factor 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:41,340,410...41,358,261
Ensembl chr21:41,340,969...41,357,206 		JBrowse link
positive regulation of DNA-directed DNA polymerase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPM1 nucleophosmin 1 ISO RGD PMID:8123045 RGD:11535022 NCBI chr 4:40,756,464...40,770,174
Ensembl chr 4:40,756,465...40,770,175 		JBrowse link
positive regulation of DNA-templated DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDT1 chromatin licensing and DNA replication factor 1 involved_in ISO (PMID:11125146) CAFA PMID:11125146 NCBI chr 5:64,566,035...64,570,361
Ensembl chr 5:64,566,043...64,570,748 		JBrowse link
positive regulation of DNA-templated DNA replication initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK2 cyclin dependent kinase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20215406) Ensembl
MGI		 PMID:20215406 GO_REF:0000107 NCBI chr10:300,863...306,546
Ensembl chr10:300,903...305,438 		JBrowse link
G CIZ1 CDKN1A interacting zinc finger protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20215406)
(PMID:15585571)		 Ensembl
MGI		 PMID:15585571 PMID:20215406 GO_REF:0000107 NCBI chr 9:55,303,189...55,322,429
Ensembl chr 9:55,303,129...55,318,945 		JBrowse link
positive regulation of mitochondrial DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENDOG endonuclease G involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:54,809,470...54,812,795
Ensembl chr 9:54,809,530...54,813,042 		JBrowse link
G MTNAP1 mitochondrial nucleoid associated protein 1 involved_in ISO (MGI:7564184|PMID:37676315) UniProt PMID:37676315 MGI:7564184 NCBI chr 9:6,937,549...6,948,439
Ensembl chr 9:6,937,588...6,947,403 		JBrowse link
G SSBP1 single stranded DNA binding protein 1 involved_in ISO (PMID:31550240) UniProt PMID:31550240 NCBI chr16:7,445,351...7,461,513
Ensembl chr16:7,451,444...7,461,464 		JBrowse link
positive regulation of mitotic cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGFR1 fibroblast growth factor receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:2161540) Ensembl
MGI		 PMID:2161540 GO_REF:0000107 NCBI chr16:27,029,902...27,080,514
Ensembl chr16:27,031,588...27,078,261 		JBrowse link
positive regulation of nuclear cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATRX ATRX chromatin remodeler involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:59,772,067...60,107,016
Ensembl chr  X:59,774,585...60,106,980 		JBrowse link
G CDC7 cell division cycle 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:57,336,165...57,362,478
Ensembl chr 6:57,337,407...57,362,757 		JBrowse link
G DBF4 DBF4 zinc finger involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:13,983,832...14,019,917
Ensembl chr14:13,803,576...14,019,704 		JBrowse link
G DBF4B DBF4B-CDC7 kinase regulatory subunit involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:18,734,678...18,768,128 JBrowse link
G INO80 INO80 complex ATPase subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:8,100,536...8,229,868
Ensembl chr30:8,101,934...8,202,025 		JBrowse link
G WIZ WIZ zinc finger involved_in ISO (PMID:23545495) UniProt PMID:23545495 NCBI chr20:46,746,991...46,773,065
Ensembl chr20:46,747,062...46,817,240 		JBrowse link
regulation of DNA endoreduplication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SENP2 SUMO specific peptidase 2 acts_upstream_of_or_within ISO (PMID:19090619) MGI PMID:19090619 NCBI chr34:18,325,373...18,357,152
Ensembl chr34:18,325,553...18,356,192 		JBrowse link
regulation of DNA-templated DNA replication initiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDT1 chromatin licensing and DNA replication factor 1 involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr 5:64,566,035...64,570,361
Ensembl chr 5:64,566,043...64,570,748 		JBrowse link
G GMNN geminin DNA replication inhibitor involved_in IEA Ensembl GO_REF:0000107 NCBI chr35:22,796,558...22,805,961
Ensembl chr35:22,798,386...22,805,959 		JBrowse link
G KAT7 lysine acetyltransferase 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:25,841,916...25,875,245
Ensembl chr 9:25,842,054...25,873,674 		JBrowse link
G MCIDAS multiciliate differentiation and DNA synthesis associated cell cycle protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:42,577,028...42,583,120
Ensembl chr 2:42,577,039...42,583,011 		JBrowse link
G TICRR TOPBP1 interacting checkpoint and replication regulator involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 3:52,584,913...52,629,731
Ensembl chr 3:52,584,454...52,629,164 		JBrowse link
G WRNIP1 WRN helicase interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr35:3,103,507...3,127,657
Ensembl chr35:3,103,418...3,127,504 		JBrowse link
regulation of mitochondrial DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G METTL4 methyltransferase 4, N6-adenosine involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:69,229,717...69,268,223
Ensembl chr 7:69,191,223...69,267,683 		JBrowse link
regulation of mitotic cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ZMPSTE24 zinc metallopeptidase STE24 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15980864) Ensembl
MGI		 PMID:15980864 GO_REF:0000107 NCBI chr15:2,669,546...2,708,480
Ensembl chr15:2,670,326...2,709,160 		JBrowse link
regulation of nuclear cell cycle DNA replication term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AICDA activation induced cytidine deaminase involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:37,064,107...37,073,791
Ensembl chr27:37,064,080...37,073,789 		JBrowse link
G CDT1 chromatin licensing and DNA replication factor 1 acts_upstream_of_or_within ISO (PMID:11850834) MGI PMID:11850834 NCBI chr 5:64,566,035...64,570,361
Ensembl chr 5:64,566,043...64,570,748 		JBrowse link
G DACH1 dachshund family transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:25,690,700...25,934,449
Ensembl chr22:25,726,597...25,934,550 		JBrowse link
G ILKAP ILK associated serine/threonine phosphatase ISO RGD PMID:9857069 RGD:632254 NCBI chr25:48,666,850...48,689,405
Ensembl chr25:48,666,849...48,689,381 		JBrowse link
G NUGGC nuclear GTPase, germinal center associated involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:29,507,198...29,561,565
Ensembl chr25:29,520,921...29,561,349 		JBrowse link
replication fork arrest term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TIMELESS timeless circadian regulator involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr10:671,829...701,152
Ensembl chr10:671,269...687,016 		JBrowse link
G TIPIN TIMELESS interacting protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr30:30,641,557...30,657,353
Ensembl chr30:30,641,555...30,657,260 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17878
    regulation of biological process 12008
      regulation of metabolic process 6335
        regulation of macromolecule metabolic process 5787
          regulation of DNA metabolic process 465
            regulation of DNA replication 119
              regulation of DNA-templated DNA replication 35
                negative regulation of DNA-templated DNA replication + 8
                positive regulation of DNA-templated DNA replication + 15
                regulation of DNA endoreduplication + 4
                regulation of DNA replication termination + 0
                regulation of DNA-directed DNA polymerase activity + 1
                regulation of DNA-templated DNA replication initiation + 8
                regulation of mitochondrial DNA replication + 6
                regulation of nuclear cell cycle DNA replication + 13
                regulation of replication fork arrest at rDNA repeats 0
Path 2
Term Annotations click to browse term
  biological_process 17878
    metabolic process 10933
      cellular metabolic process 9610
        cellular aromatic compound metabolic process 5577
          nucleobase-containing compound metabolic process 5349
            nucleic acid metabolic process 4781
              DNA metabolic process 942
                DNA replication 263
                  DNA-templated DNA replication 152
                    regulation of DNA-templated DNA replication 35
                      negative regulation of DNA-templated DNA replication + 8
                      positive regulation of DNA-templated DNA replication + 15
                      regulation of DNA endoreduplication + 4
                      regulation of DNA replication termination + 0
                      regulation of DNA-directed DNA polymerase activity + 1
                      regulation of DNA-templated DNA replication initiation + 8
                      regulation of mitochondrial DNA replication + 6
                      regulation of nuclear cell cycle DNA replication + 13
                      regulation of replication fork arrest at rDNA repeats 0
paths to the root